mRNA_M-pyrifera_M_contig953.21984.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig953.21984.1
Unique NamemRNA_M-pyrifera_M_contig953.21984.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig953.21984.1 vs. uniprot
Match: A0A6H5JT61_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT61_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.390e-16
Identity = 38/76 (50.00%), Postives = 52/76 (68.42%), Query Frame = 1 
Query:   10 MALTPQVSADTWHRRLGHMNPRSMKVFRRKNGNAIDFNGAISGCPTCTLGKSQQNTHPKKPIHKTTGPMELVYTDL 237
            +A    V+A+T HRRLGH+N RSMK+ R+K  N +DF+ +++ C  C + KS Q  HPKK   +TT PM LVYTD+
Sbjct:   98 VAFATTVNANTPHRRLGHLNFRSMKLLRKKEENEVDFSDSMTPCDICAISKSTQLAHPKKTSRETTAPMLLVYTDI 173
[Close]
BLAST of mRNA_M-pyrifera_M_contig953.21984.1 vs. uniprot
Match: A0A6H5KP59_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP59_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 9.580e-15
Identity = 31/69 (44.93%), Postives = 47/69 (68.12%), Query Frame = 1 
Query:   28 VSADTWHRRLGHMNPRSMKVFRRKNGNAIDFNGAISGCPTCTLGKSQQNTHPKKPIHKTTGPMELVYTD 234
            VSADTWHRRLGH+N RS+++ R+  G  +D+  ++S C  C +GK +Q+ HPK+   + + P +LV  D
Sbjct:  304 VSADTWHRRLGHLNARSLEILRKDTGTGVDYRDSLSPCGVCQIGKHKQSPHPKQSTRELSRPGQLVVID 372
[Close]
BLAST of mRNA_M-pyrifera_M_contig953.21984.1 vs. uniprot
Match: A0A6H5JFQ6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFQ6_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.500e-14
Identity = 30/69 (43.48%), Postives = 47/69 (68.12%), Query Frame = 1 
Query:   28 VSADTWHRRLGHMNPRSMKVFRRKNGNAIDFNGAISGCPTCTLGKSQQNTHPKKPIHKTTGPMELVYTD 234
            V+ADTWHRRLGH+N RS+ + R+  G  +D+  ++S C  C + K +Q++HPK+  H+ + P +LV  D
Sbjct:   40 VTADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSSHPKQSTHELSRPGQLVVID 108
[Close]
BLAST of mRNA_M-pyrifera_M_contig953.21984.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 3.090e-14
Identity = 30/69 (43.48%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:   28 VSADTWHRRLGHMNPRSMKVFRRKNGNAIDFNGAISGCPTCTLGKSQQNTHPKKPIHKTTGPMELVYTD 234
            VSADTWHRRLGH+N RS+ + R+  G  +D+  ++S C  C + K +Q+ HPK+   + + P +LV  D
Sbjct:   40 VSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVID 108
[Close]
BLAST of mRNA_M-pyrifera_M_contig953.21984.1 vs. uniprot
Match: A0A6H5JRJ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ1_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 7.180e-14
Identity = 31/69 (44.93%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:   28 VSADTWHRRLGHMNPRSMKVFRRKNGNAIDFNGAISGCPTCTLGKSQQNTHPKKPIHKTTGPMELVYTD 234
            VSADTWHRRLGH+N RS+ + R+  G  +DF  ++S C  C + K +Q+ HPK+   + + P +LV  D
Sbjct:   40 VSADTWHRRLGHLNARSLDILRKDTGTGVDFRDSLSPCGVCQIAKYKQSPHPKQSTRELSRPGQLVVID 108
[Close]
BLAST of mRNA_M-pyrifera_M_contig953.21984.1 vs. uniprot
Match: A0A6H5KCM0_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM0_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.310e-13
Identity = 30/69 (43.48%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:   28 VSADTWHRRLGHMNPRSMKVFRRKNGNAIDFNGAISGCPTCTLGKSQQNTHPKKPIHKTTGPMELVYTD 234
            VSADTWHRRLGH+N RS+ + R+  G  +D+  ++S C  C + K +Q+ HPK+   + + P +LV  D
Sbjct:   40 VSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVID 108
[Close]
BLAST of mRNA_M-pyrifera_M_contig953.21984.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.320e-13
Identity = 30/69 (43.48%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:   28 VSADTWHRRLGHMNPRSMKVFRRKNGNAIDFNGAISGCPTCTLGKSQQNTHPKKPIHKTTGPMELVYTD 234
            VSADTWHRRLGH+N RS+ + R+  G  +D+  ++S C  C + K +Q+ HPK+   + + P +LV  D
Sbjct:  416 VSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVID 484
[Close]
BLAST of mRNA_M-pyrifera_M_contig953.21984.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.330e-13
Identity = 30/69 (43.48%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:   28 VSADTWHRRLGHMNPRSMKVFRRKNGNAIDFNGAISGCPTCTLGKSQQNTHPKKPIHKTTGPMELVYTD 234
            VSADTWHRRLGH+N RS+ + R+  G  +D+  ++S C  C + K +Q+ HPK+   + + P +LV  D
Sbjct:   40 VSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVID 108
[Close]
BLAST of mRNA_M-pyrifera_M_contig953.21984.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.330e-13
Identity = 30/69 (43.48%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:   28 VSADTWHRRLGHMNPRSMKVFRRKNGNAIDFNGAISGCPTCTLGKSQQNTHPKKPIHKTTGPMELVYTD 234
            VSADTWHRRLGH+N RS+ + R+  G  +D+  ++S C  C + K +Q+ HPK+   + + P +LV  D
Sbjct:   40 VSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVID 108
[Close]
BLAST of mRNA_M-pyrifera_M_contig953.21984.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.340e-13
Identity = 29/68 (42.65%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:   31 SADTWHRRLGHMNPRSMKVFRRKNGNAIDFNGAISGCPTCTLGKSQQNTHPKKPIHKTTGPMELVYTD 234
            +AD WHRR+GH+N +S+ V R++  + ID+ G +  C  C LGKS Q  HPK  ++  + P +LV+ D
Sbjct:   43 TADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVD 110
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig953.21984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JT61_9PHAE1.390e-1650.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KP59_9PHAE9.580e-1544.93CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JFQ6_9PHAE1.500e-1443.48Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KZ34_9PHAE3.090e-1443.48Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JRJ1_9PHAE7.180e-1444.93Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCM0_9PHAE1.310e-1343.48Integrase catalytic domain-containing protein n=5 ... [more]
A0A6H5KT84_9PHAE1.320e-1343.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K500_9PHAE1.330e-1343.48Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K1R7_9PHAE1.330e-1343.48Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KNH5_9PHAE1.340e-1342.65Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig953contigM-pyrifera_M_contig953:15087..15323 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size237
Cds size228
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816867.4084046-CDS-M-pyrifera_M_contig953:15086..153141622816867.4084046-CDS-M-pyrifera_M_contig953:15086..15314Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig953 15087..15314 -
1692278225.1987634-CDS-M-pyrifera_M_contig953:15086..153141692278225.1987634-CDS-M-pyrifera_M_contig953:15086..15314Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig953 15087..15314 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816867.4200745-UTR-M-pyrifera_M_contig953:15314..153231622816867.4200745-UTR-M-pyrifera_M_contig953:15314..15323Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig953 15315..15323 -
1692278225.2173445-UTR-M-pyrifera_M_contig953:15314..153231692278225.2173445-UTR-M-pyrifera_M_contig953:15314..15323Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig953 15315..15323 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig953.21984.1prot_M-pyrifera_M_contig953.21984.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig953 15087..15314 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig953.21984.1

>prot_M-pyrifera_M_contig953.21984.1 ID=prot_M-pyrifera_M_contig953.21984.1|Name=mRNA_M-pyrifera_M_contig953.21984.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=76bp
MALTPQVSADTWHRRLGHMNPRSMKVFRRKNGNAIDFNGAISGCPTCTLG
KSQQNTHPKKPIHKTTGPMELVYTDL
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mRNA from alignment at M-pyrifera_M_contig953:15087..15323-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig953.21984.1 ID=mRNA_M-pyrifera_M_contig953.21984.1|Name=mRNA_M-pyrifera_M_contig953.21984.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=237bp|location=Sequence derived from alignment at M-pyrifera_M_contig953:15087..15323- (Macrocystis pyrifera P11B4 male)
TCTACAGCCATGGCACTTACACCTCAGGTCAGTGCAGATACCTGGCATAG
GAGGCTGGGACACATGAACCCCCGCAGCATGAAAGTATTCCGCCGAAAGA
ACGGCAACGCCATCGACTTCAACGGTGCTATATCGGGCTGCCCCACCTGC
ACGTTGGGAAAGAGCCAACAAAATACACACCCCAAGAAACCCATACACAA
GACAACAGGACCCATGGAGCTTGTCTACACCGACCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig953:15087..15323-

>mRNA_M-pyrifera_M_contig953.21984.1 ID=mRNA_M-pyrifera_M_contig953.21984.1|Name=mRNA_M-pyrifera_M_contig953.21984.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig953:15087..15323- (Macrocystis pyrifera P11B4 male)
ATGGCACTTACACCTCAGGTCAGTGCAGATACCTGGCATAGGAGGCTGGG
ACACATGAACCCCCGCAGCATGAAAGTATTCCGCCGAAAGAACGGCAACG
CCATCGACTTCAACGGTGCTATATCGGGCTGCCCCACCTGCACGTTGGGA
AAGAGCCAACAAAATACACACCCCAAGAAACCCATACACAAGACAACAGG
ACCCATGGAGCTTGTCTACACCGACCTCATGGCACTTACACCTCAGGTCA
GTGCAGATACCTGGCATAGGAGGCTGGGACACATGAACCCCCGCAGCATG
AAAGTATTCCGCCGAAAGAACGGCAACGCCATCGACTTCAACGGTGCTAT
ATCGGGCTGCCCCACCTGCACGTTGGGAAAGAGCCAACAAAATACACACC
CCAAGAAACCCATACACAAGACAACAGGACCCATGGAGCTTGTCTACACC
GACCTC
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