mRNA_M-pyrifera_M_contig95261.21976.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95261.21976.1
Unique NamemRNA_M-pyrifera_M_contig95261.21976.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig95261.21976.1 vs. uniprot
Match: A0A1E7KQ57_9ACTN (Uncharacterized protein n=1 Tax=Streptomyces oceani TaxID=1075402 RepID=A0A1E7KQ57_9ACTN)

HSP 1 Score: 53.9 bits (128), Expect = 1.930e-6
Identity = 26/73 (35.62%), Postives = 41/73 (56.16%), Query Frame = 1 
Query:   28 LTAHVAPLGTSARP-AGDGWEVSVWYVEVL-VYGDEL---AVEQWRTATYTVEWEAGEWRMADLVSRDGPTPV 231
              + + P+GT     +  G  VSVWY  +  + G+E      E W T T+T+EW+ G+W++AD   ++GP PV
Sbjct:  195 FVSRMIPVGTKTLDYSSSGATVSVWYSSLFGLTGEESKNPVTESWYTNTFTLEWDDGDWKVADFEQKEGPAPV 267
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BLAST of mRNA_M-pyrifera_M_contig95261.21976.1 vs. uniprot
Match: A0A2A3H5H8_9ACTN (Uncharacterized protein n=1 Tax=Streptomyces sp. Tue6028 TaxID=2036037 RepID=A0A2A3H5H8_9ACTN)

HSP 1 Score: 49.3 bits (116), Expect = 8.410e-5
Identity = 25/84 (29.76%), Postives = 45/84 (53.57%), Query Frame = 1 
Query:    1 DVELSVPGGLT--AHVAPLGTSARPAGD-GWEVSVWYVEVLVYGDELAVEQ----WRTATYTVEWEAGEWRMADLVSRDGPTPV 231
            D + + P G T  +   P+GT+     D G +VSVWY+ ++    + + +     W+T T+ + W+ G+W++     +DGP PV
Sbjct:  174 DAKGNPPAGSTFVSRTVPVGTTVHQYSDTGAKVSVWYMGLIGMSGQTSTDPVSSTWKTWTFELHWDNGDWKIVTDSQKDGPAPV 257
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95261.21976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A1E7KQ57_9ACTN1.930e-635.62Uncharacterized protein n=1 Tax=Streptomyces ocean... [more]
A0A2A3H5H8_9ACTN8.410e-529.76Uncharacterized protein n=1 Tax=Streptomyces sp. T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95261contigM-pyrifera_M_contig95261:298..567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816867.0274491-CDS-M-pyrifera_M_contig95261:297..5671622816867.0274491-CDS-M-pyrifera_M_contig95261:297..567Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95261 298..567 +
1692278224.941673-CDS-M-pyrifera_M_contig95261:297..5671692278224.941673-CDS-M-pyrifera_M_contig95261:297..567Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95261 298..567 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95261.21976.1prot_M-pyrifera_M_contig95261.21976.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95261 298..567 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95261.21976.1

>prot_M-pyrifera_M_contig95261.21976.1 ID=prot_M-pyrifera_M_contig95261.21976.1|Name=mRNA_M-pyrifera_M_contig95261.21976.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp
DVELSVPGGLTAHVAPLGTSARPAGDGWEVSVWYVEVLVYGDELAVEQWR
TATYTVEWEAGEWRMADLVSRDGPTPVRPASTVASPAAEL
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mRNA from alignment at M-pyrifera_M_contig95261:298..567+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95261.21976.1 ID=mRNA_M-pyrifera_M_contig95261.21976.1|Name=mRNA_M-pyrifera_M_contig95261.21976.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig95261:298..567+ (Macrocystis pyrifera P11B4 male)
GACGTCGAGCTCTCGGTGCCTGGCGGGTTGACCGCCCATGTGGCACCGCT
CGGTACGTCGGCTCGTCCGGCAGGCGACGGGTGGGAGGTCTCGGTCTGGT
ACGTCGAGGTGCTCGTCTACGGCGACGAGTTGGCCGTCGAGCAGTGGCGC
ACAGCCACCTACACCGTCGAGTGGGAAGCGGGGGAGTGGCGCATGGCCGA
TCTCGTATCTCGTGATGGGCCCACGCCGGTCCGGCCAGCCTCGACCGTTG
CGTCGCCCGCAGCGGAGCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95261:298..567+

>mRNA_M-pyrifera_M_contig95261.21976.1 ID=mRNA_M-pyrifera_M_contig95261.21976.1|Name=mRNA_M-pyrifera_M_contig95261.21976.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig95261:298..567+ (Macrocystis pyrifera P11B4 male)
GACGTCGAGCTCTCGGTGCCTGGCGGGTTGACCGCCCATGTGGCACCGCT
CGGTACGTCGGCTCGTCCGGCAGGCGACGGGTGGGAGGTCTCGGTCTGGT
ACGTCGAGGTGCTCGTCTACGGCGACGAGTTGGCCGTCGAGCAGTGGCGC
ACAGCCACCTACACCGTCGAGTGGGAAGCGGGGGAGTGGCGCATGGCCGA
TCTCGTATCTCGTGATGGGCCCACGCCGGTCCGGCCAGCCTCGACCGTTG
CGTCGCCCGCAGCGGAGCTCGACGTCGAGCTCTCGGTGCCTGGCGGGTTG
ACCGCCCATGTGGCACCGCTCGGTACGTCGGCTCGTCCGGCAGGCGACGG
GTGGGAGGTCTCGGTCTGGTACGTCGAGGTGCTCGTCTACGGCGACGAGT
TGGCCGTCGAGCAGTGGCGCACAGCCACCTACACCGTCGAGTGGGAAGCG
GGGGAGTGGCGCATGGCCGATCTCGTATCTCGTGATGGGCCCACGCCGGT
CCGGCCAGCCTCGACCGTTGCGTCGCCCGCAGCGGAGCTC
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