mRNA_M-pyrifera_M_contig95248.21974.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95248.21974.1
Unique NamemRNA_M-pyrifera_M_contig95248.21974.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig95248.21974.1 vs. uniprot
Match: D3BGA1_POLPP (Uncharacterized protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BGA1_POLPP)

HSP 1 Score: 92.4 bits (228), Expect = 3.010e-20
Identity = 49/108 (45.37%), Postives = 67/108 (62.04%), Query Frame = 1
Query:    1 TGAIAARTGTAATALEELDDAEPVWSSVAFYLAHLCLTLTLTMAPQVVVLGGGVMQRKALLPAIREHFARLLNGYVAVATVT--DLERYIVAPPTEEAPGVLGAVRLA 318
            TGAI+ R G  A  L  + D +PVW  V  YLA LC T+T  M+PQV+VLGGGV+ R  L P IR+   ++LNGY+    +T  ++ +YIV  P     G++GA+ LA
Sbjct:  189 TGAISKRLGVTADKLSVIPDDDPVWQIVGHYLAELCATITCIMSPQVIVLGGGVLNRTILYPIIRDELLKILNGYIKSEFLTKENVHKYIVQSPFGSNAGIVGALELA 296          
BLAST of mRNA_M-pyrifera_M_contig95248.21974.1 vs. uniprot
Match: A0A1Y4R7N6_9FIRM (Fructokinase n=1 Tax=Lachnoclostridium sp. An14 TaxID=1965562 RepID=A0A1Y4R7N6_9FIRM)

HSP 1 Score: 91.7 bits (226), Expect = 4.790e-20
Identity = 44/95 (46.32%), Postives = 64/95 (67.37%), Query Frame = 1
Query:   49 ELDDAEPVWSSVAFYLAHLCLTLTLTMAPQVVVLGGGVMQRKALLPAIREHFARLLNGYVAVATVTDLERYIVAPPTEEAPGVLGAVRLATAALE 333
            +L D + VW   ++Y+A   +   LT++PQ ++LGGGVM ++ L+P IRE  A+LLNGYV    + DLE YIV P  ++  G++GAV+LA  ALE
Sbjct:  195 DLADNQQVWEFESYYIAQALVNYILTLSPQKIILGGGVMHQEQLMPMIREQVAKLLNGYVETPEMHDLENYIVLPSLDDNQGIMGAVKLAMEALE 289          
BLAST of mRNA_M-pyrifera_M_contig95248.21974.1 vs. uniprot
Match: A0A7S2ZLT8_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZLT8_9RHOD)

HSP 1 Score: 91.7 bits (226), Expect = 9.570e-20
Identity = 48/110 (43.64%), Postives = 71/110 (64.55%), Query Frame = 1
Query:    7 AIAARTGTAATALEELDDAEPVWSSVAFYLAHLCLTLTLTMAPQVVVLGGGVMQRKALLPAIREHFARLLNGYVAVATVTD-LERYIVAPPTEEAPGVLGAVRLATAALE 333
            AIA R     + L++L D  PVW ++A+Y+A +C T+T  ++P V+VLGGG+M R+ LLP IRE    +LNGYV V  VT+ +++YI         G++GA+ L + ALE
Sbjct:  228 AIAERAKVDISELKDLADDNPVWETIAYYMAEMCATITYLISPHVIVLGGGIMNREILLPMIREKTTEILNGYVNVPRVTEEMDQYICRSVFSSNSGIVGALSLGSLALE 337          
BLAST of mRNA_M-pyrifera_M_contig95248.21974.1 vs. uniprot
Match: A0A7S1XDA8_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XDA8_9RHOD)

HSP 1 Score: 87.0 bits (214), Expect = 1.290e-19
Identity = 46/105 (43.81%), Postives = 65/105 (61.90%), Query Frame = 1
Query:    7 AIAARTGTAATALEELDDAEPVWSSVAFYLAHLCLTLTLTMAPQVVVLGGGVMQRKALLPAIREHFARLLNGYVAVATVTD-LERYIVAPPTEEAPGVLGAVRLA 318
            AIA R     T+L EL D   VW+ +AFYLA LC  +T  ++P+V+VLGGG++QR  LLP I +HF  +++GY  V  +   L+ YIV        G++GA+ LA
Sbjct:   26 AIADRCNIKRTSLHELSDDNAVWNVIAFYLAQLCANVTYLLSPEVIVLGGGILQRTVLLPLIHQHFTEIIHGYFDVDKINHRLDEYIVRSQYGNDIGLIGAMELA 130          
BLAST of mRNA_M-pyrifera_M_contig95248.21974.1 vs. uniprot
Match: A0A024UAH6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UAH6_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.360e-19
Identity = 45/76 (59.21%), Postives = 56/76 (73.68%), Query Frame = 1
Query:    4 GAIAARTGTAATALEELDDAEPVWSSVAFYLAHLCLTLTLTMAPQVVVLGGGVMQRKALLPAIREHFARLLNGYVA 231
            GAIAART    TAL E+ D++PVW  VA YLAH+C+ LTLT++P V+VLGGGV +R+ LL  I   FA  LNGYV+
Sbjct:  195 GAIAARTKVERTALHEIPDSDPVWDVVAHYLAHVCVNLTLTVSPHVIVLGGGVSKRQGLLAKIHAKFATYLNGYVS 270          
BLAST of mRNA_M-pyrifera_M_contig95248.21974.1 vs. uniprot
Match: A0A5J4YYK9_PORPP (Fructokinase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YYK9_PORPP)

HSP 1 Score: 89.7 bits (221), Expect = 6.650e-19
Identity = 48/104 (46.15%), Postives = 67/104 (64.42%), Query Frame = 1
Query:    7 AIAARTGTAATALEELDDAEPVWSSVAFYLAHLCLTLTLTMAPQVVVLGGGVMQRKALLPAIREHFARLLNGYVAVATVTD-LERYIVAPPTEEAPGVLGAVRL 315
            AIA R G   T L EL D  PVW +VAFYLA LC+++T  ++P V+V+ GGV++RK L   IR+HF +L  GY +V  V   L+++IV P      G++GA+ L
Sbjct:  254 AIARRAGVETTQLAELPDTHPVWDTVAFYLAQLCVSITYLVSPHVIVISGGVLKRKVLFALIRKHFEQLNAGYCSVDKVMHKLDQFIVPPSYGYEIGIIGALHL 357          
BLAST of mRNA_M-pyrifera_M_contig95248.21974.1 vs. uniprot
Match: F4PL12_CAVFA (IPT/TIG domain-containing protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PL12_CAVFA)

HSP 1 Score: 90.1 bits (222), Expect = 9.540e-19
Identity = 48/108 (44.44%), Postives = 66/108 (61.11%), Query Frame = 1
Query:    1 TGAIAARTGTAATALEELDDAEPVWSSVAFYLAHLCLTLTLTMAPQVVVLGGGVMQRKALLPAIREHFARLLNGYVAVATVTD--LERYIVAPPTEEAPGVLGAVRLA 318
            TGAIA R G +   L  + D +PVWS V  YLA LC  L L  +P+++VLGGGVM R  L P I     ++LNGY+    +T+  +++YIV  P E   G++GA+ LA
Sbjct:  188 TGAIAKRLGVSPDKLAMIPDDDPVWSIVGHYLAQLCANLILISSPEIIVLGGGVMNRSVLFPIIGTQVLKILNGYIKSPYLTEELIDQYIVLSPFEHRSGIVGALELA 295          
BLAST of mRNA_M-pyrifera_M_contig95248.21974.1 vs. uniprot
Match: A0A7S4NZT5_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4NZT5_9EUKA)

HSP 1 Score: 87.0 bits (214), Expect = 2.250e-18
Identity = 47/108 (43.52%), Postives = 64/108 (59.26%), Query Frame = 1
Query:    4 GAIAARTGTAATALEELDDAEPVWSSVAFYLAHLCLTLTLTMAPQVVVLGGGVMQRKALLPAIREHFARLLNGYVAVATVTDLERYIVAPPTEEAPGVLGAVRLATAA 327
            GAIA R G     L +L D+  VW+ ++ YL HLC+ +  T+APQ +VLGGG+ QRK L   IR++F + +NGY+      DLE YI   P  E  GV G + +A  A
Sbjct:  164 GAIAKRAGVEPKDLADLPDSHKVWADISHYLTHLCIAIHYTVAPQFIVLGGGIFQRKCLFGMIRDNFGKTVNGYMPYQD--DLEGYIRESPFGENAGVHGGIAMAVLA 269          
BLAST of mRNA_M-pyrifera_M_contig95248.21974.1 vs. uniprot
Match: Q54TJ9_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54TJ9_DICDI)

HSP 1 Score: 87.4 bits (215), Expect = 2.520e-18
Identity = 48/112 (42.86%), Postives = 68/112 (60.71%), Query Frame = 1
Query:    1 TGAIAARTGTAATALEELDDAEPVWSSVAFYLAHLCLTLTLTMAPQVVVLGGGVMQRKALLPAIREHFARLLNGYVAVATVTD--LERYIVAPPTEEAPGVLGAVRLATAAL 330
            TGAI+ R G  A  L E++D  PVW  +  YLA LC  +T  ++PQV+VLGGGV+ R  L P IR    ++LNGY+    +T+  +++YIV  P     G +G++ LA  AL
Sbjct:  193 TGAISKRLGINADKLSEINDDHPVWLIIGNYLAQLCANITCLLSPQVIVLGGGVLNRSILYPIIRTETIKILNGYIKSKYLTNDFIDQYIVQSPFASHAGSIGSLELARRAL 304          
BLAST of mRNA_M-pyrifera_M_contig95248.21974.1 vs. uniprot
Match: A0A1V9YEI1_9STRA (Fructokinase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YEI1_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.900e-18
Identity = 46/109 (42.20%), Postives = 67/109 (61.47%), Query Frame = 1
Query:    4 GAIAARTGTAATALEELDDAEPVWSSVAFYLAHLCLTLTLTMAPQVVVLGGGVMQRKALLPAIREHFARLLNGYVAVATVTDLERYIVAPPTEEAPGVLGAVRLATAAL 330
            GAIAAR      AL+ + D++PVW +VA YLAH+C+ L LT++PQV+V+GGGV +R  L   I   F + +NGYV    +T+  R    P   E  G++ ++ L+  AL
Sbjct:  191 GAIAARLSIERQALQSIPDSDPVWDTVAHYLAHVCVNLALTVSPQVIVIGGGVPKRNGLFDKIHAKFLKFMNGYVKTPPMTEFIR----PSIHEDVGLVSSLELSRLAL 295          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95248.21974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D3BGA1_POLPP3.010e-2045.37Uncharacterized protein n=1 Tax=Polysphondylium pa... [more]
A0A1Y4R7N6_9FIRM4.790e-2046.32Fructokinase n=1 Tax=Lachnoclostridium sp. An14 Ta... [more]
A0A7S2ZLT8_9RHOD9.570e-2043.64Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S1XDA8_9RHOD1.290e-1943.81Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A024UAH6_9STRA2.360e-1959.21Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A5J4YYK9_PORPP6.650e-1946.15Fructokinase n=1 Tax=Porphyridium purpureum TaxID=... [more]
F4PL12_CAVFA9.540e-1944.44IPT/TIG domain-containing protein n=1 Tax=Cavender... [more]
A0A7S4NZT5_9EUKA2.250e-1843.52Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
Q54TJ9_DICDI2.520e-1842.86Uncharacterized protein n=1 Tax=Dictyostelium disc... [more]
A0A1V9YEI1_9STRA2.900e-1842.20Fructokinase n=1 Tax=Achlya hypogyna TaxID=1202772... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95248contigM-pyrifera_M_contig95248:2..337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue2.7e-15
Seed eggNOG ortholog157072.XP_008868609.1
KEGG rclassRC00002,RC00017
KEGG koko:K00847
KEGG ReactionR00760,R00867,R03920
KEGG Pathwayko00051,ko00500,ko00520,ko01100,map00051,map00500,map00520,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ROK family
EggNOG OGs2QRD3@2759,COG1940@1
EC2.7.1.4
COG Functional cat.GK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size336
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816866.954564-CDS-M-pyrifera_M_contig95248:1..3371622816866.954564-CDS-M-pyrifera_M_contig95248:1..337Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95248 2..337 +
1692278224.909333-CDS-M-pyrifera_M_contig95248:1..3371692278224.909333-CDS-M-pyrifera_M_contig95248:1..337Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95248 2..337 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95248.21974.1prot_M-pyrifera_M_contig95248.21974.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95248 2..337 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95248.21974.1

>prot_M-pyrifera_M_contig95248.21974.1 ID=prot_M-pyrifera_M_contig95248.21974.1|Name=mRNA_M-pyrifera_M_contig95248.21974.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
TGAIAARTGTAATALEELDDAEPVWSSVAFYLAHLCLTLTLTMAPQVVVL
GGGVMQRKALLPAIREHFARLLNGYVAVATVTDLERYIVAPPTEEAPGVL
GAVRLATAALE*
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mRNA from alignment at M-pyrifera_M_contig95248:2..337+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95248.21974.1 ID=mRNA_M-pyrifera_M_contig95248.21974.1|Name=mRNA_M-pyrifera_M_contig95248.21974.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig95248:2..337+ (Macrocystis pyrifera P11B4 male)
ACGGGGGCGATAGCAGCACGCACAGGCACGGCCGCTACCGCGCTGGAGGA GCTGGACGACGCAGAGCCAGTGTGGAGCAGCGTGGCCTTCTACCTGGCCC ACCTGTGCCTCACGCTCACGCTCACAATGGCCCCCCAGGTGGTGGTGCTG GGCGGCGGCGTGATGCAGAGGAAGGCCCTCCTCCCGGCCATCAGAGAGCA CTTTGCTCGCCTCCTCAATGGCTACGTCGCTGTCGCCACTGTGACAGACC TCGAGCGTTACATTGTGGCGCCTCCCACGGAGGAGGCGCCTGGCGTGCTC GGCGCCGTCCGCCTCGCCACCGCTGCACTGGAATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95248:2..337+

>mRNA_M-pyrifera_M_contig95248.21974.1 ID=mRNA_M-pyrifera_M_contig95248.21974.1|Name=mRNA_M-pyrifera_M_contig95248.21974.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig95248:2..337+ (Macrocystis pyrifera P11B4 male)
ACGGGGGCGATAGCAGCACGCACAGGCACGGCCGCTACCGCGCTGGAGGA
GCTGGACGACGCAGAGCCAGTGTGGAGCAGCGTGGCCTTCTACCTGGCCC
ACCTGTGCCTCACGCTCACGCTCACAATGGCCCCCCAGGTGGTGGTGCTG
GGCGGCGGCGTGATGCAGAGGAAGGCCCTCCTCCCGGCCATCAGAGAGCA
CTTTGCTCGCCTCCTCAATGGCTACGTCGCTGTCGCCACTGTGACAGACC
TCGAGCGTTACATTGTGGCGCCTCCCACGGAGGAGGCGCCTGGCGTGCTC
GGCGCCGTCCGCCTCGCCACCGCTGCACTGGAATAGACGGGGGCGATAGC
AGCACGCACAGGCACGGCCGCTACCGCGCTGGAGGAGCTGGACGACGCAG
AGCCAGTGTGGAGCAGCGTGGCCTTCTACCTGGCCCACCTGTGCCTCACG
CTCACGCTCACAATGGCCCCCCAGGTGGTGGTGCTGGGCGGCGGCGTGAT
GCAGAGGAAGGCCCTCCTCCCGGCCATCAGAGAGCACTTTGCTCGCCTCC
TCAATGGCTACGTCGCTGTCGCCACTGTGACAGACCTCGAGCGTTACATT
GTGGCGCCTCCCACGGAGGAGGCGCCTGGCGTGCTCGGCGCCGTCCGCCT
CGCCACCGCTGCACTGGAATAG
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