mRNA_M-pyrifera_M_contig95234.21969.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95234.21969.1
Unique NamemRNA_M-pyrifera_M_contig95234.21969.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95234.21969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95234contigM-pyrifera_M_contig95234:2..388 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816866.766742-CDS-M-pyrifera_M_contig95234:1..2091622816866.766742-CDS-M-pyrifera_M_contig95234:1..209Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95234 2..209 -
1692278224.8234727-CDS-M-pyrifera_M_contig95234:1..2091692278224.8234727-CDS-M-pyrifera_M_contig95234:1..209Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95234 2..209 -
1622816866.7777197-CDS-M-pyrifera_M_contig95234:272..3881622816866.7777197-CDS-M-pyrifera_M_contig95234:272..388Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95234 273..388 -
1692278224.8346653-CDS-M-pyrifera_M_contig95234:272..3881692278224.8346653-CDS-M-pyrifera_M_contig95234:272..388Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95234 273..388 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95234.21969.1prot_M-pyrifera_M_contig95234.21969.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95234 2..388 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95234.21969.1

>prot_M-pyrifera_M_contig95234.21969.1 ID=prot_M-pyrifera_M_contig95234.21969.1|Name=mRNA_M-pyrifera_M_contig95234.21969.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
TAVLQLLSAVEKTMLSEAVEARSRGSAEERPFPHSLPDEPVTGEAEETEM
DDRADSEVTATRFWSELFYAVSSKEVHVLEYILDLSLQFIRKERFEELAV
ILQQVPLL
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mRNA from alignment at M-pyrifera_M_contig95234:2..388-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95234.21969.1 ID=mRNA_M-pyrifera_M_contig95234.21969.1|Name=mRNA_M-pyrifera_M_contig95234.21969.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=387bp|location=Sequence derived from alignment at M-pyrifera_M_contig95234:2..388- (Macrocystis pyrifera P11B4 male)
ACAGCCGTTTTGCAGTTGCTCTCTGCAGTGGAGAAGACTATGCTCTCTGA
GGCAGTGGAGGCGAGGAGCCGTGGCAGCGCGGAGGAGCGGCCCTTCCCCC
ATTCGTTGCCTGATGAGTTTCTGGTGCTCACTGAGGAGCTGGAGCCGAGT
CCTGGAGTACGCATGTTCTCTCCGATCAGACCTGTCACAGGGGAAGCAGA
AGAGACAGAAATGGACGACAGAGCCGACAGTGAGGTGACGGCCACGAGGT
TTTGGTCAGAGCTCTTCTACGCCGTCTCCTCGAAGGAGGTCCACGTATTG
GAGTACATTCTTGACCTGTCGCTACAGTTCATTCGAAAAGAGCGCTTTGA
AGAGCTGGCGGTCATCCTCCAGCAGGTACCCTTGCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95234:2..388-

>mRNA_M-pyrifera_M_contig95234.21969.1 ID=mRNA_M-pyrifera_M_contig95234.21969.1|Name=mRNA_M-pyrifera_M_contig95234.21969.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig95234:2..388- (Macrocystis pyrifera P11B4 male)
ACAGCCGTTTTGCAGTTGCTCTCTGCAGTGGAGAAGACTATGCTCTCTGA
GGCAGTGGAGGCGAGGAGCCGTGGCAGCGCGGAGGAGCGGCCCTTCCCCC
ATTCGTTGCCTGATGAACAGCCGTTTTGCAGTTGCTCTCTGCAGTGGAGA
AGACTATGCTCTCTGAGGCAGTGGAGGCGAGGAGCCGTGGCAGCGCGGAG
GAGCGGCCCTTCCCCCATTCGTTGCCTGATGAACCTGTCACAGGGGAAGC
AGAAGAGACAGAAATGGACGACAGAGCCGACAGTGAGGTGACGGCCACGA
GGTTTTGGTCAGAGCTCTTCTACGCCGTCTCCTCGAAGGAGGTCCACGTA
TTGGAGTACATTCTTGACCTGTCGCTACAGTTCATTCGAAAAGAGCGCTT
TGAAGAGCTGGCGGTCATCCTCCAGCAGGTACCCTTGCTCACCTGTCACA
GGGGAAGCAGAAGAGACAGAAATGGACGACAGAGCCGACAGTGAGGTGAC
GGCCACGAGGTTTTGGTCAGAGCTCTTCTACGCCGTCTCCTCGAAGGAGG
TCCACGTATTGGAGTACATTCTTGACCTGTCGCTACAGTTCATTCGAAAA
GAGCGCTTTGAAGAGCTGGCGGTCATCCTCCAGCAGGTACCCTTGCTC
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