mRNA_M-pyrifera_M_contig952.21968.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig952.21968.1
Unique NamemRNA_M-pyrifera_M_contig952.21968.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig952.21968.1 vs. uniprot
Match: A0A836CLG1_9STRA (Complex1_LYR_dom domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLG1_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.060e-19
Identity = 42/87 (48.28%), Postives = 58/87 (66.67%), Query Frame = 1
Query:   13 LLREAESRLSFLKIATPRGRVGSAGATRAVYRDGKVMDGEKARQHDKARHSNWGGGNLDPDSVRQHKQNLARGGFANHRQVIGPHGF 273
            LL +A+SRLS+LKI TPR      GA + VY+DGK+++  +     +A  SNW G N+DPDSV +H+  L+R GF +H  V+G HGF
Sbjct:   47 LLNQAQSRLSYLKIVTPRDARNQEGAVKVVYQDGKLVEHVQT-DRPRAPISNWTGSNMDPDSVSRHRHTLSRAGFKDHGHVLGEHGF 132          
BLAST of mRNA_M-pyrifera_M_contig952.21968.1 vs. uniprot
Match: A0A7S2S2D5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2D5_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.090e-18
Identity = 44/87 (50.57%), Postives = 58/87 (66.67%), Query Frame = 1
Query:    7 KDLLREAESRLSFLKIATPRG--RVGSAGATRAVYRDGKVMDGEKARQHDKARHSNWGGGNLDPDSVRQHKQNLARGGFANHRQVIG 261
            + LL +AESRLSFLK+ TPR   R+G   +T  VY++GK +D   AR  D+ARHSNW G N+DPDSV +H+  L R GF ++    G
Sbjct:   53 QQLLAQAESRLSFLKMVTPREYHRLGGQQSTYYVYQNGKRLDDGSARTQDRARHSNWTGSNMDPDSVAKHQHLLNRAGFQDNSHAKG 139          
BLAST of mRNA_M-pyrifera_M_contig952.21968.1 vs. uniprot
Match: A0A7S2HLR1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HLR1_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.590e-12
Identity = 42/95 (44.21%), Postives = 56/95 (58.95%), Query Frame = 1
Query:    1 QAKDLLREAESRLSFLKIATP----RGRVGSAGA-TRAVY--RDGKVMDGEKARQHDKAR-HSNWGGGNLDPDSVRQHKQNLARGGFANHRQVIG 261
            Q + LL EA  ++++L+I TP    RG   S  A TR VY  +  K+ DG     H K + HSNW GGN+DP SV++HKQ L+R GF N+    G
Sbjct:   53 QIQPLLEEAGKKIAYLRIITPKDKWRGDSKSQSAETRWVYNGKGEKIQDGVGTPSHQKGKVHSNWSGGNMDPCSVKRHKQQLSRAGFVNNLHAKG 147          
BLAST of mRNA_M-pyrifera_M_contig952.21968.1 vs. uniprot
Match: A0A1Z5K517_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K517_FISSO)

HSP 1 Score: 63.9 bits (154), Expect = 6.140e-11
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = 1
Query:   16 LREAESRLSFLKIATPRGRVGSAGATRAVYRDGKVM--DGEKARQHDKARH-SNWGGGNLDPDSVRQHKQNLARGGFANHRQVIG 261
            LREAESRLSFL++ + + +     A R VYR+G+ +  D E   +  K +  SNW G NLDP+SV+ H+Q L R GF N+    G
Sbjct:   50 LREAESRLSFLRMKSTKSQQRGTLAGRWVYRNGERLEADAEGTFRDSKGKVVSNWDGKNLDPESVKMHRQQLRRAGFVNNAHAKG 134          
BLAST of mRNA_M-pyrifera_M_contig952.21968.1 vs. uniprot
Match: A0A6U3XLZ3_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3XLZ3_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 6.270e-8
Identity = 32/86 (37.21%), Postives = 47/86 (54.65%), Query Frame = 1
Query:   13 LLREAESRLSFLKIATPRGRVGSAGATRAVYRDG---KVMDGEKARQHDKARHSNWGGGNLDPDSVRQHKQNLARGGFANHRQVIG 261
            L+ EA  ++++L+I TP+ R  +  ++     DG   KV +G      D    SNW G NLDP SV++H+Q L R GF N+    G
Sbjct:   71 LIEEAGKKIAYLRIVTPKDRSTNQKSSERWIYDGNGNKVFNGIGQLNRDGKAVSNWNGKNLDPCSVKRHRQQLGRAGFVNNLHAKG 156          
BLAST of mRNA_M-pyrifera_M_contig952.21968.1 vs. uniprot
Match: A0A6U5IKK5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5IKK5_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.080e-7
Identity = 35/87 (40.23%), Postives = 52/87 (59.77%), Query Frame = 1
Query:   13 LLREAESRLSFLKIATPRGRVGSA---GATRAVY-RDGKVMDGEKARQHDKARHSNWGGGNLDPDSVRQHKQNLARGGFANHRQVIG 261
            LL EAE ++++L++ TP+ R       G+ R VY R+G+  +G   R    A  SNW G NLDP+SV++H Q L RGG+ ++    G
Sbjct:   66 LLLEAEKKMAYLRMITPKDRTRDGPQQGSVRYVYAREGEGGNGTVRR----APVSNWHGSNLDPESVKRHHQLLRRGGWRDNAHAKG 148          
BLAST of mRNA_M-pyrifera_M_contig952.21968.1 vs. uniprot
Match: A0A5A8C7E9_CAFRO (Complex1_LYR_dom domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C7E9_CAFRO)

HSP 1 Score: 54.3 bits (129), Expect = 3.860e-7
Identity = 34/79 (43.04%), Postives = 47/79 (59.49%), Query Frame = 1
Query:   10 DLLREAESRLSFLK-IATPRGRVGSAGATRA-----VYRDGKVMDGEKARQHDKARHSNWGGGNLDPDSVRQHKQNLAR 228
            +LL +A  RLSF++ +  P  R   A  T+      V RDG+V DG  AR+ +KA++SNW  GNLDPD V +H   + R
Sbjct:   51 ELLHDATKRLSFMRTLVPPHLRPDFADGTQQGFQQYVVRDGRVEDGA-ARRKEKAKYSNWRQGNLDPDDVAKHHDQMRR 128          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig952.21968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A836CLG1_9STRA2.060e-1948.28Complex1_LYR_dom domain-containing protein (Fragme... [more]
A0A7S2S2D5_9STRA2.090e-1850.57Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2HLR1_9STRA2.590e-1244.21Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A1Z5K517_FISSO6.140e-1144.71Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A6U3XLZ3_9STRA6.270e-837.21Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
A0A6U5IKK5_9STRA1.080e-740.23Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A5A8C7E9_CAFRO3.860e-743.04Complex1_LYR_dom domain-containing protein n=2 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig952contigM-pyrifera_M_contig952:16402..16677 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size276
Cds size276
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816866.7375448-CDS-M-pyrifera_M_contig952:16401..166771622816866.7375448-CDS-M-pyrifera_M_contig952:16401..16677Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig952 16402..16677 -
1692278224.8120453-CDS-M-pyrifera_M_contig952:16401..166771692278224.8120453-CDS-M-pyrifera_M_contig952:16401..16677Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig952 16402..16677 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig952.21968.1prot_M-pyrifera_M_contig952.21968.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig952 16402..16677 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig952.21968.1

>prot_M-pyrifera_M_contig952.21968.1 ID=prot_M-pyrifera_M_contig952.21968.1|Name=mRNA_M-pyrifera_M_contig952.21968.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=92bp
QAKDLLREAESRLSFLKIATPRGRVGSAGATRAVYRDGKVMDGEKARQHD
KARHSNWGGGNLDPDSVRQHKQNLARGGFANHRQVIGPHGF*
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mRNA from alignment at M-pyrifera_M_contig952:16402..16677-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig952.21968.1 ID=mRNA_M-pyrifera_M_contig952.21968.1|Name=mRNA_M-pyrifera_M_contig952.21968.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig952:16402..16677- (Macrocystis pyrifera P11B4 male)
CAGGCAAAGGACCTTTTACGAGAGGCTGAGTCGAGGCTAAGTTTCCTCAA GATAGCAACGCCCAGGGGCAGGGTTGGCAGTGCCGGCGCAACTCGGGCCG TTTACCGGGACGGCAAGGTGATGGACGGAGAGAAAGCGCGACAGCACGAC AAAGCGAGGCATAGCAACTGGGGGGGCGGCAATTTGGACCCCGACAGCGT CAGACAACACAAGCAGAATCTGGCTCGAGGGGGCTTCGCGAACCATCGAC AAGTTATTGGGCCGCATGGTTTCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig952:16402..16677-

>mRNA_M-pyrifera_M_contig952.21968.1 ID=mRNA_M-pyrifera_M_contig952.21968.1|Name=mRNA_M-pyrifera_M_contig952.21968.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig952:16402..16677- (Macrocystis pyrifera P11B4 male)
CAGGCAAAGGACCTTTTACGAGAGGCTGAGTCGAGGCTAAGTTTCCTCAA
GATAGCAACGCCCAGGGGCAGGGTTGGCAGTGCCGGCGCAACTCGGGCCG
TTTACCGGGACGGCAAGGTGATGGACGGAGAGAAAGCGCGACAGCACGAC
AAAGCGAGGCATAGCAACTGGGGGGGCGGCAATTTGGACCCCGACAGCGT
CAGACAACACAAGCAGAATCTGGCTCGAGGGGGCTTCGCGAACCATCGAC
AAGTTATTGGGCCGCATGGTTTCTGACAGGCAAAGGACCTTTTACGAGAG
GCTGAGTCGAGGCTAAGTTTCCTCAAGATAGCAACGCCCAGGGGCAGGGT
TGGCAGTGCCGGCGCAACTCGGGCCGTTTACCGGGACGGCAAGGTGATGG
ACGGAGAGAAAGCGCGACAGCACGACAAAGCGAGGCATAGCAACTGGGGG
GGCGGCAATTTGGACCCCGACAGCGTCAGACAACACAAGCAGAATCTGGC
TCGAGGGGGCTTCGCGAACCATCGACAAGTTATTGGGCCGCATGGTTTCT
GA
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