mRNA_M-pyrifera_M_contig95193.21965.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95193.21965.1
Unique NamemRNA_M-pyrifera_M_contig95193.21965.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig95193.21965.1 vs. uniprot
Match: A0A6B1AXC1_9ACTN (30S ribosomal protein S3 n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1AXC1_9ACTN)

HSP 1 Score: 368 bits (945), Expect = 3.370e-126
Identity = 214/241 (88.80%), Postives = 221/241 (91.70%), Query Frame = 1 
Query:    1 DRLRVHVHTARPGIVIGRRGSEADRLRAGLTSITGNAKVQLNIQEIKQPELDAALIAQGVADQLAXXXXXXXXXXXXVQNAQKAGALGIRVQCSGRLGGSEMARTEWYREGRVPLHTLRADVDYGFREARTTYGRIGVKVWLYKGDILPYKTTTDDKATLEAAMAAGETSGQAKPRKVVSSAAARKRVATPETETDAEPEEEPAPLIKEADPEFEKLLDEEDAIEASTREQSETPHFRDND 723
            DRLRV VHTARPGIVIGRRGSEADRLRAGLT ITGNAKVQLNIQEIKQPE DAALIAQG+ADQL XXXXXXXXXXXXVQNAQKAGALGIRVQCSGRLGGSEMAR EWY EGRVPLHTLRADVDYGFREA TTYGRIGVKVWLYKGDILPYKT T+DKATLEAAMA GETSGQ++ RK+VSSAAAR+R   PE E D +  EEPAPLIKEADPEFEKLLDEEDAIEASTRE SETPHFR ND
Sbjct:   62 DRLRVDVHTARPGIVIGRRGSEADRLRAGLTKITGNAKVQLNIQEIKQPEFDAALIAQGIADQLXXXXXXXXXXXXXVQNAQKAGALGIRVQCSGRLGGSEMARNEWYLEGRVPLHTLRADVDYGFREAPTTYGRIGVKVWLYKGDILPYKTQTEDKATLEAAMATGETSGQSRSRKIVSSAAARRRE-FPEREPDID--EEPAPLIKEADPEFEKLLDEEDAIEASTREHSETPHFRAND 299
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BLAST of mRNA_M-pyrifera_M_contig95193.21965.1 vs. uniprot
Match: A0A3M2GPY7_ACTSX (30S ribosomal protein S3 n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GPY7_ACTSX)

HSP 1 Score: 365 bits (937), Expect = 5.180e-125
Identity = 213/241 (88.38%), Postives = 218/241 (90.46%), Query Frame = 1 
Query:    1 DRLRVHVHTARPGIVIGRRGSEADRLRAGLTSITGNAKVQLNIQEIKQPELDAALIAQGVADQLAXXXXXXXXXXXXVQNAQKAGALGIRVQCSGRLGGSEMARTEWYREGRVPLHTLRADVDYGFREARTTYGRIGVKVWLYKGDILPYKTTTDDKATLEAAMAAGETSGQAKPRKVVSSAAARKRVATPETETDAEPEEEPAPLIKEADPEFEKLLDEEDAIEASTREQSETPHFRDND 723
            DRLRV VHTARPGIVIGRRG EADR+RAGLT I+GNAKVQLNIQEIKQPELDAALIAQGVADQLAXXXXXXXXXXXXVQNAQKAGALGIRVQCSGRLGGSEMARTEWYREGRVPLHTLRADVDYGFREARTTYGRIGVKVWLYKGDILPYKT  ++K T EAAMA GETSGQAKPR VVS AAARKR A PETE      EEPAPL+KEADPEFEKLLDEE AIEASTRE  ETPHFR  D
Sbjct:   62 DRLRVDVHTARPGIVIGRRGVEADRIRAGLTRISGNAKVQLNIQEIKQPELDAALIAQGVADQLAXXXXXXXXXXXXVQNAQKAGALGIRVQCSGRLGGSEMARTEWYREGRVPLHTLRADVDYGFREARTTYGRIGVKVWLYKGDILPYKTVAEEKITREAAMAVGETSGQAKPRPVVS-AAARKRAAAPETEV-----EEPAPLLKEADPEFEKLLDEEAAIEASTREHRETPHFRPGD 296
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BLAST of mRNA_M-pyrifera_M_contig95193.21965.1 vs. uniprot
Match: A0A2D6U8Y1_9ACTN (30S ribosomal protein S3 n=7 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6U8Y1_9ACTN)

HSP 1 Score: 365 bits (936), Expect = 9.040e-125
Identity = 216/243 (88.89%), Postives = 225/243 (92.59%), Query Frame = 1 
Query:    1 DRLRVHVHTARPGIVIGRRGSEADRLRAGLTSITGNAKVQLNIQEIKQPELDAALIAQGVADQLAXXXXXXXXXXXXVQNAQKAGALGIRVQCSGRLGGSEMARTEWYREGRVPLHTLRADVDYGFREARTTYGRIGVKVWLYKGDILPYKTTTDDKATLEAAMAAGETSGQA-KPRKVVSSAAARKRVATPETE-TDAEPEEEPAPLIKEADPEFEKLLDEEDAIEASTREQSETPHFRDND 723
            +RLRV VHTARPGIVIGRRG+EADRLRAGLT I+G  KVQLNIQEIKQPELDAALIAQG+ADQ  XXXXXXXXXXXX QNAQKAGALGIRVQ SGRLGGSEMARTEWYREGRVPLHTLRADVDYGFREARTTYGRIGVKVWLYKGDILPYKT T+DKATLEAAMAAGETSGQ+ KPRKVVSSAA RKRVATPETE  D E +EEPAPLIKEADPEFE+LL EEDA EASTREQSETP+FR ND
Sbjct:   62 ERLRVDVHTARPGIVIGRRGAEADRLRAGLTKISGXPKVQLNIQEIKQPELDAALIAQGIADQXXXXXXXXXXXXXXXQNAQKAGALGIRVQSSGRLGGSEMARTEWYREGRVPLHTLRADVDYGFREARTTYGRIGVKVWLYKGDILPYKTQTEDKATLEAAMAAGETSGQSTKPRKVVSSAA-RKRVATPETEGADNEVDEEPAPLIKEADPEFERLLXEEDAXEASTREQSETPNFRAND 303
[Close]
BLAST of mRNA_M-pyrifera_M_contig95193.21965.1 vs. uniprot
Match: A0A6B1EC84_9ACTN (30S ribosomal protein S3 n=6 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1EC84_9ACTN)

HSP 1 Score: 352 bits (902), Expect = 1.170e-119
Identity = 194/242 (80.17%), Postives = 206/242 (85.12%), Query Frame = 1 
Query:    1 DRLRVHVHTARPGIVIGRRGSEADRLRAGLTSITGNAKVQLNIQEIKQPELDAALIAQGVADQLAXXXXXXXXXXXXVQNAQKAGALGIRVQCSGRLGGSEMARTEWYREGRVPLHTLRADVDYGFREARTTYGRIGVKVWLYKGDILPYKTTTDDKATLEAAMAAGETSGQ-AKPRKVVSSAAARKRVATPETETDAEPEEEPAPLIKEADPEFEKLLDEEDAIEASTREQSETPHFRDND 723
            DRLRV VHTARPGIVIGRRG+EADRLRAGLT I+GN +VQLNIQEIKQPELDAALIAQGVADQL             VQNAQ+AGALGIRVQCSGRLGGSEMARTEWYREGRVPLHTLRADVDYGFREARTTYGRIGVKVWLYKGDILPYKT ++DKA+ EAAMAAGETSG  A+PRK+VSS+AAR+R  T E       +EEPAPLI EADPEFEKLLDEE AIEASTRE  ETPHFR  D
Sbjct:   62 DRLRVDVHTARPGIVIGRRGAEADRLRAGLTDISGNPRVQLNIQEIKQPELDAALIAQGVADQLTGRVAFRRAMKRAVQNAQRAGALGIRVQCSGRLGGSEMARTEWYREGRVPLHTLRADVDYGFREARTTYGRIGVKVWLYKGDILPYKTLSEDKASKEAAMAAGETSGPGARPRKIVSSSAARRREFTDEMV-----DEEPAPLIGEADPEFEKLLDEEAAIEASTREHHETPHFRPGD 298
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BLAST of mRNA_M-pyrifera_M_contig95193.21965.1 vs. uniprot
Match: A0A7K1EAF4_9ACTN (30S ribosomal protein S3 n=4 Tax=root TaxID=1 RepID=A0A7K1EAF4_9ACTN)

HSP 1 Score: 345 bits (884), Expect = 6.580e-117
Identity = 199/241 (82.57%), Postives = 212/241 (87.97%), Query Frame = 1 
Query:    1 DRLRVHVHTARPGIVIGRRGSEADRLRAGLTSITGNAKVQLNIQEIKQPELDAALIAQGVADQLAXXXXXXXXXXXXVQNAQKAGALGIRVQCSGRLGGSEMARTEWYREGRVPLHTLRADVDYGFREARTTYGRIGVKVWLYKGDILPYKTTTDDKATLEAAMAAGETSGQAKPRKVVSSAAARKRVATPETETDAEPEEEPAPLIKEADPEFEKLLDEEDAIEASTREQSETPHFRDND 723
            DRLRV VHTARPGIVIGRRG+EADRLRAGLT+I+GN KVQLNIQEIKQPELDAALIAQGVADQLAXXXXXXXXXXXXVQNAQKAGALGIRVQCSGRLGG+EM+RTEWYREGRVPLHTLRAD+DYGFREA+TTYGRIGVKVWLYKGDILPYK+  DDKAT EAAMA GETSG A+PRKVVSSAA RKR A  E   D E      PL+KEADPE E+LL EE+ IE STR+  ETPHFR  D
Sbjct:   62 DRLRVDVHTARPGIVIGRRGAEADRLRAGLTAISGNNKVQLNIQEIKQPELDAALIAQGVADQLAXXXXXXXXXXXXVQNAQKAGALGIRVQCSGRLGGAEMSRTEWYREGRVPLHTLRADIDYGFREAKTTYGRIGVKVWLYKGDILPYKSVLDDKATREAAMAVGETSGDARPRKVVSSAAGRKRDADSELIEDIEA----TPLVKEADPELERLLAEEEEIERSTRQHHETPHFRPGD 298
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BLAST of mRNA_M-pyrifera_M_contig95193.21965.1 vs. uniprot
Match: A0A5Q2RAM7_9ACTN (30S ribosomal protein S3 n=3 Tax=Bacteria TaxID=2 RepID=A0A5Q2RAM7_9ACTN)

HSP 1 Score: 344 bits (883), Expect = 1.070e-116
Identity = 196/241 (81.33%), Postives = 210/241 (87.14%), Query Frame = 1 
Query:    1 DRLRVHVHTARPGIVIGRRGSEADRLRAGLTSITGNAKVQLNIQEIKQPELDAALIAQGVADQLAXXXXXXXXXXXXVQNAQKAGALGIRVQCSGRLGGSEMARTEWYREGRVPLHTLRADVDYGFREARTTYGRIGVKVWLYKGDILPYKTTTDDKATLEAAMAAGETSGQAKPRKVVSSAAARKRVATPETETDAEPEEEPAPLIKEADPEFEKLLDEEDAIEASTREQSETPHFRDND 723
            DRLRV VHTARPGIVIGRRGSEADRLRAGLT ITGN KVQLNIQEIKQPELDAALIAQGVADQLAXXXXXXXXXXXXVQNAQKAGALGIRVQCSGRLGGSEMARTEWY EGRVPLHTLRAD+DYGFREA+TTYGRIGVKVW+YKGDILPYKTT +DK + EAAMA G+T+G+ +PRKVVSSAAAR+R              EPAPL+KEADP+FE+LL EE+ IE S RE  ETPHFR  D
Sbjct:   62 DRLRVDVHTARPGIVIGRRGSEADRLRAGLTKITGNNKVQLNIQEIKQPELDAALIAQGVADQLAXXXXXXXXXXXXVQNAQKAGALGIRVQCSGRLGGSEMARTEWYHEGRVPLHTLRADIDYGFREAKTTYGRIGVKVWIYKGDILPYKTTAEDKISKEAAMAVGDTAGEGRPRKVVSSAAARRRPEETPAXXXXXXXXEPAPLVKEADPDFERLLAEEEEIERSVREHHETPHFRPGD 302
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BLAST of mRNA_M-pyrifera_M_contig95193.21965.1 vs. uniprot
Match: A0A2D9PS55_9ACTN (30S ribosomal protein S3 n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D9PS55_9ACTN)

HSP 1 Score: 340 bits (871), Expect = 8.450e-115
Identity = 192/246 (78.05%), Postives = 209/246 (84.96%), Query Frame = 1 
Query:    1 DRLRVHVHTARPGIVIGRRGSEADRLRAGLTSITGNAKVQLNIQEIKQPELDAALIAQGVADQLAXXXXXXXXXXXXVQNAQKAGALGIRVQCSGRLGGSEMARTEWYREGRVPLHTLRADVDYGFREARTTYGRIGVKVWLYKGDILPYKTTTDDKATLEAAMAAGETSGQAKPRKVVSSAAARKRV----ATPETETDAE-PEEEPAPLIKEADPEFEKLLDEEDAIEASTREQSETPHFRDND 723
            DR+RV VHTARPGIVIGR+G+EADRLRAGL  ITGN  VQLNIQEIK+PE DAALIAQGVADQLA     XXXXXX VQNAQKAGALGIRVQCSGRLGG+EM+RTEWYREGRVPLHTLRAD+DYGFRE+RTTYGRIGVKVW+Y+GDILPYK+  +DK T EAAMA GETSGQA+PR VVSSAAAR+R     AT  TE +A   E EPAPL+KE D EFEKLL EE+AIEASTRE  ETPHFR  D
Sbjct:   62 DRVRVDVHTARPGIVIGRKGTEADRLRAGLGEITGNNSVQLNIQEIKEPEXDAALIAQGVADQLAGRVAFXXXXXXAVQNAQKAGALGIRVQCSGRLGGAEMSRTEWYREGRVPLHTLRADIDYGFRESRTTYGRIGVKVWIYRGDILPYKSLLEDKVTKEAAMAVGETSGQARPRTVVSSAAARRRTDAAEATQATEAEAPIAEAEPAPLVKEGDAEFEKLLAEEEAIEASTREAHETPHFRGGD 307
[Close]
BLAST of mRNA_M-pyrifera_M_contig95193.21965.1 vs. uniprot
Match: A0A6L6EPW7_9ACTN (30S ribosomal protein S3 n=5 Tax=root TaxID=1 RepID=A0A6L6EPW7_9ACTN)

HSP 1 Score: 339 bits (869), Expect = 1.440e-114
Identity = 193/241 (80.08%), Postives = 210/241 (87.14%), Query Frame = 1 
Query:    1 DRLRVHVHTARPGIVIGRRGSEADRLRAGLTSITGNAKVQLNIQEIKQPELDAALIAQGVADQLAXXXXXXXXXXXXVQNAQKAGALGIRVQCSGRLGGSEMARTEWYREGRVPLHTLRADVDYGFREARTTYGRIGVKVWLYKGDILPYKTTTDDKATLEAAMAAGETSGQAKPRKVVSSAAARKRVATPETETDAEPEEEPAPLIKEADPEFEKLLDEEDAIEASTREQSETPHFRDND 723
            DRLR+ VHTARPGIVIGRRG+EADRLR GLT I+GN KVQLNIQEIKQPELDAALIAQGVADQLAXXXXXXXXXXXXVQNAQKAGALGIRVQC+GRLGG+EM+RTEWYREGRVPLHTLRAD+DYGFREA+TTYGRIGVKVWLYKGDILPYK+  DDK   EAAMA GETSG+   RKVVSSAA R+R    E    AEP+EE  PL+KEADPE E+LL EE+ IE STR+ +ETPHFR  D
Sbjct:   62 DRLRIDVHTARPGIVIGRRGAEADRLRNGLTKISGNNKVQLNIQEIKQPELDAALIAQGVADQLAXXXXXXXXXXXXVQNAQKAGALGIRVQCAGRLGGAEMSRTEWYREGRVPLHTLRADIDYGFREAKTTYGRIGVKVWLYKGDILPYKSVADDKIVREAAMAVGETSGEPGARKVVSSAAGRRRSDAAEAAGAAEPDEENTPLLKEADPELERLLAEEEEIERSTRQHTETPHFRPGD 302
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BLAST of mRNA_M-pyrifera_M_contig95193.21965.1 vs. uniprot
Match: A0A2E5ZGT6_9ACTN (30S ribosomal protein S3 n=3 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E5ZGT6_9ACTN)

HSP 1 Score: 336 bits (861), Expect = 3.540e-113
Identity = 198/253 (78.26%), Postives = 214/253 (84.58%), Query Frame = 1 
Query:    1 DRLRVHVHTARPGIVIGRRGSEADRLRAGLTSITGNAKVQLNIQEIKQPELDAALIAQGVADQLAXXXXXXXXXXXXVQNAQKAGALGIRVQCSGRLGGSEMARTEWYREGRVPLHTLRADVDYGFREARTTYGRIGVKVWLYKGDILPYKTTTDDKATLEAAMAAGETSGQAKPRKVVSSAAARKRVATPETET---DAEPEE---------EPAPLIKEADPEFEKLLDEEDAIEASTREQSETPHFRDND 723
            D+LRV VHTARPGIVIGR+GSEADRLRAGL  ITGN  V LNIQEIK+PELDAALIAQGVADQLAXXXXXXXXXXXXVQNAQKAGALGIRVQCSGRLGG+EM+RTEWYR GRVPLHTLRAD+DYGFREARTTYGRIGVKVW+YKGDILPYK+  +DK T EAAMAAGETSGQ KPR VVSSAAAR+R    ET     +A+PE          EPAPL+KE D EFEKLL EE+AIEA+TR+  ETPHFR  D
Sbjct:   62 DKLRVDVHTARPGIVIGRKGSEADRLRAGLGKITGNHTVTLNIQEIKEPELDAALIAQGVADQLAXXXXXXXXXXXXVQNAQKAGALGIRVQCSGRLGGAEMSRTEWYRXGRVPLHTLRADIDYGFREARTTYGRIGVKVWIYKGDILPYKSVLEDKITKEAAMAAGETSGQNKPRTVVSSAAARRRTEAAETAEATPEADPEATXXXXXXXXEPAPLVKEGDAEFEKLLAEEEAIEANTRDSHETPHFRGGD 314
[Close]
BLAST of mRNA_M-pyrifera_M_contig95193.21965.1 vs. uniprot
Match: A0A6B0ZUT2_9ACTN (30S ribosomal protein S3 n=4 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6B0ZUT2_9ACTN)

HSP 1 Score: 335 bits (858), Expect = 5.890e-113
Identity = 188/241 (78.01%), Postives = 199/241 (82.57%), Query Frame = 1 
Query:    1 DRLRVHVHTARPGIVIGRRGSEADRLRAGLTSITGNAKVQLNIQEIKQPELDAALIAQGVADQLAXXXXXXXXXXXXVQNAQKAGALGIRVQCSGRLGGSEMARTEWYREGRVPLHTLRADVDYGFREARTTYGRIGVKVWLYKGDILPYKTTTDDKATLEAAMAAGETSGQAKPRKVVSSAAARKRVATPETETDAEPEEEPAPLIKEADPEFEKLLDEEDAIEASTREQSETPHFRDND 723
            DRLRV VHTARPGIVIGRRGSEADRLR GL  ITGN +VQLNIQEIKQPELDAALI+QGVADQLA       XXXX VQNAQKAGALGIRVQCSGRLGGSEMARTEWYREGRVPLHTLRAD+DYGFREA TTYGRIGVKVW+YKGDILPYKT  +DK + EAAMA GE SG  KPR VVSSAAA ++          +  EEPAPLIKEADPEFEKLL+EE+ I  STRE SETPHFR  D
Sbjct:   62 DRLRVDVHTARPGIVIGRRGSEADRLRNGLAKITGNNRVQLNIQEIKQPELDAALISQGVADQLANRVAFRRXXXXAVQNAQKAGALGIRVQCSGRLGGSEMARTEWYREGRVPLHTLRADIDYGFREAHTTYGRIGVKVWIYKGDILPYKTQAEDKISREAAMAVGEASGTQKPRAVVSSAAAPRQG----DHERVDETEEPAPLIKEADPEFEKLLEEEEDILRSTREHSETPHFRPGD 298
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95193.21965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B1AXC1_9ACTN3.370e-12688.8030S ribosomal protein S3 n=1 Tax=Acidimicrobiaceae... [more]
A0A3M2GPY7_ACTSX5.180e-12588.3830S ribosomal protein S3 n=1 Tax=Actinomyces sp. T... [more]
A0A2D6U8Y1_9ACTN9.040e-12588.8930S ribosomal protein S3 n=7 Tax=Acidimicrobiaceae... [more]
A0A6B1EC84_9ACTN1.170e-11980.1730S ribosomal protein S3 n=6 Tax=Acidimicrobiaceae... [more]
A0A7K1EAF4_9ACTN6.580e-11782.5730S ribosomal protein S3 n=4 Tax=root TaxID=1 RepI... [more]
A0A5Q2RAM7_9ACTN1.070e-11681.3330S ribosomal protein S3 n=3 Tax=Bacteria TaxID=2 ... [more]
A0A2D9PS55_9ACTN8.450e-11578.0530S ribosomal protein S3 n=1 Tax=Acidimicrobiaceae... [more]
A0A6L6EPW7_9ACTN1.440e-11480.0830S ribosomal protein S3 n=5 Tax=root TaxID=1 RepI... [more]
A0A2E5ZGT6_9ACTN3.540e-11378.2630S ribosomal protein S3 n=3 Tax=Acidimicrobiaceae... [more]
A0A6B0ZUT2_9ACTN5.890e-11378.0130S ribosomal protein S3 n=4 Tax=Acidimicrobiia ba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95193contigM-pyrifera_M_contig95193:3..728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score285.4
Seed ortholog evalue2.5e-74
Seed eggNOG ortholog1313172.YM304_08310
Preferred namerpsC
KEGG koko:K02982
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000028,GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030312,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
EggNOG OGs2GKF1@201174,4CMU9@84992,COG0092@1,COG0092@2
COG Functional cat.J
Best tax levelAcidimicrobiia
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size726
Cds size726
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816866.5677145-CDS-M-pyrifera_M_contig95193:2..7281622816866.5677145-CDS-M-pyrifera_M_contig95193:2..728Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95193 3..728 +
1692278224.7017221-CDS-M-pyrifera_M_contig95193:2..7281692278224.7017221-CDS-M-pyrifera_M_contig95193:2..728Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95193 3..728 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95193.21965.1prot_M-pyrifera_M_contig95193.21965.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95193 3..728 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95193.21965.1

>prot_M-pyrifera_M_contig95193.21965.1 ID=prot_M-pyrifera_M_contig95193.21965.1|Name=mRNA_M-pyrifera_M_contig95193.21965.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=242bp
DRLRVHVHTARPGIVIGRRGSEADRLRAGLTSITGNAKVQLNIQEIKQPE
LDAALIAQGVADQLAGRVAFRRAMKRAVQNAQKAGALGIRVQCSGRLGGS
EMARTEWYREGRVPLHTLRADVDYGFREARTTYGRIGVKVWLYKGDILPY
KTTTDDKATLEAAMAAGETSGQAKPRKVVSSAAARKRVATPETETDAEPE
EEPAPLIKEADPEFEKLLDEEDAIEASTREQSETPHFRDND*
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mRNA from alignment at M-pyrifera_M_contig95193:3..728+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95193.21965.1 ID=mRNA_M-pyrifera_M_contig95193.21965.1|Name=mRNA_M-pyrifera_M_contig95193.21965.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig95193:3..728+ (Macrocystis pyrifera P11B4 male)
GATCGTCTCCGCGTCCACGTCCACACCGCCCGCCCGGGCATCGTGATCGG
CCGTCGTGGTTCCGAGGCCGACCGTCTCCGTGCCGGTCTCACCTCGATCA
CGGGCAACGCCAAGGTGCAGCTCAACATCCAGGAGATCAAGCAGCCCGAG
CTCGACGCTGCGCTGATCGCCCAGGGTGTCGCCGACCAGCTCGCCGGTCG
TGTGGCGTTCCGCCGTGCGATGAAGCGTGCGGTCCAGAACGCACAGAAGG
CCGGTGCCCTCGGCATCCGGGTCCAGTGCTCGGGTCGCCTCGGTGGCTCC
GAAATGGCCCGCACCGAGTGGTACCGCGAAGGCCGTGTGCCGCTGCACAC
CCTGCGTGCCGATGTCGACTACGGCTTCCGCGAGGCCCGCACCACCTATG
GCCGCATCGGCGTCAAGGTCTGGCTCTACAAGGGCGACATCCTTCCCTAC
AAGACCACCACCGACGACAAGGCCACGCTCGAGGCCGCCATGGCCGCCGG
CGAGACCTCCGGCCAGGCGAAGCCCCGCAAGGTCGTGTCCTCCGCGGCCG
CCCGCAAGCGGGTCGCCACCCCTGAGACCGAGACCGACGCCGAGCCCGAA
GAAGAGCCGGCGCCGCTGATCAAGGAAGCCGATCCCGAGTTCGAGAAGCT
CCTCGACGAGGAAGATGCCATCGAGGCATCCACTCGTGAGCAGAGCGAGA
CCCCGCACTTCCGGGACAACGACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95193:3..728+

>mRNA_M-pyrifera_M_contig95193.21965.1 ID=mRNA_M-pyrifera_M_contig95193.21965.1|Name=mRNA_M-pyrifera_M_contig95193.21965.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1452bp|location=Sequence derived from alignment at M-pyrifera_M_contig95193:3..728+ (Macrocystis pyrifera P11B4 male)
GATCGTCTCCGCGTCCACGTCCACACCGCCCGCCCGGGCATCGTGATCGG
CCGTCGTGGTTCCGAGGCCGACCGTCTCCGTGCCGGTCTCACCTCGATCA
CGGGCAACGCCAAGGTGCAGCTCAACATCCAGGAGATCAAGCAGCCCGAG
CTCGACGCTGCGCTGATCGCCCAGGGTGTCGCCGACCAGCTCGCCGGTCG
TGTGGCGTTCCGCCGTGCGATGAAGCGTGCGGTCCAGAACGCACAGAAGG
CCGGTGCCCTCGGCATCCGGGTCCAGTGCTCGGGTCGCCTCGGTGGCTCC
GAAATGGCCCGCACCGAGTGGTACCGCGAAGGCCGTGTGCCGCTGCACAC
CCTGCGTGCCGATGTCGACTACGGCTTCCGCGAGGCCCGCACCACCTATG
GCCGCATCGGCGTCAAGGTCTGGCTCTACAAGGGCGACATCCTTCCCTAC
AAGACCACCACCGACGACAAGGCCACGCTCGAGGCCGCCATGGCCGCCGG
CGAGACCTCCGGCCAGGCGAAGCCCCGCAAGGTCGTGTCCTCCGCGGCCG
CCCGCAAGCGGGTCGCCACCCCTGAGACCGAGACCGACGCCGAGCCCGAA
GAAGAGCCGGCGCCGCTGATCAAGGAAGCCGATCCCGAGTTCGAGAAGCT
CCTCGACGAGGAAGATGCCATCGAGGCATCCACTCGTGAGCAGAGCGAGA
CCCCGCACTTCCGGGACAACGACTGAGATCGTCTCCGCGTCCACGTCCAC
ACCGCCCGCCCGGGCATCGTGATCGGCCGTCGTGGTTCCGAGGCCGACCG
TCTCCGTGCCGGTCTCACCTCGATCACGGGCAACGCCAAGGTGCAGCTCA
ACATCCAGGAGATCAAGCAGCCCGAGCTCGACGCTGCGCTGATCGCCCAG
GGTGTCGCCGACCAGCTCGCCGGTCGTGTGGCGTTCCGCCGTGCGATGAA
GCGTGCGGTCCAGAACGCACAGAAGGCCGGTGCCCTCGGCATCCGGGTCC
AGTGCTCGGGTCGCCTCGGTGGCTCCGAAATGGCCCGCACCGAGTGGTAC
CGCGAAGGCCGTGTGCCGCTGCACACCCTGCGTGCCGATGTCGACTACGG
CTTCCGCGAGGCCCGCACCACCTATGGCCGCATCGGCGTCAAGGTCTGGC
TCTACAAGGGCGACATCCTTCCCTACAAGACCACCACCGACGACAAGGCC
ACGCTCGAGGCCGCCATGGCCGCCGGCGAGACCTCCGGCCAGGCGAAGCC
CCGCAAGGTCGTGTCCTCCGCGGCCGCCCGCAAGCGGGTCGCCACCCCTG
AGACCGAGACCGACGCCGAGCCCGAAGAAGAGCCGGCGCCGCTGATCAAG
GAAGCCGATCCCGAGTTCGAGAAGCTCCTCGACGAGGAAGATGCCATCGA
GGCATCCACTCGTGAGCAGAGCGAGACCCCGCACTTCCGGGACAACGACT
GA
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