mRNA_M-pyrifera_M_contig95172.21958.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95172.21958.1
Unique NamemRNA_M-pyrifera_M_contig95172.21958.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig95172.21958.1 vs. uniprot
Match: F2URK2_SALR5 (Glycoside hydrolase family 25 protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2URK2_SALR5)

HSP 1 Score: 130 bits (327), Expect = 1.340e-35
Identity = 61/115 (53.04%), Postives = 74/115 (64.35%), Query Frame = 1
Query:    7 IYNAWDGGMNNVDVYVFPCFRCGNPASQIGEMIHYLKSFNVVPNPKGGKYTYGQIWLDIEGPQYWGSQSE-NVAFIREMISAVKGAGINCAIYTSESQWEPITGNANIASDLPLW 348
            +YNAWDGGM+ V +Y FP  R  NPA QI  M+ YL  FN+ P  K   +TYG +WLDIEGPQYW S  E N  F + ++   K  GI   +YTSESQW PI G+ +  SDLPLW
Sbjct:   69 VYNAWDGGMDAVSLYFFPDPRADNPAHQINSMVEYLAKFNIKPGDKK-PHTYGMLWLDIEGPQYWTSSKEKNREFFKGLVERAKHHGIKVGVYTSESQWSPIMGDWHGGSDLPLW 182          
BLAST of mRNA_M-pyrifera_M_contig95172.21958.1 vs. uniprot
Match: LYSG2_DICDI (Probable GH family 25 lysozyme 2 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=LYSG2_DICDI)

HSP 1 Score: 129 bits (325), Expect = 1.850e-35
Identity = 58/115 (50.43%), Postives = 72/115 (62.61%), Query Frame = 1
Query:    4 QIYNAWDGGMNNVDVYVFPCFRCGNPASQIGEMIHYLKSFNVVPNPKGGKYTYGQIWLDIEGPQYWGSQSENVAFIREMISAVKGAGINCAIYTSESQWEPITGNANIASDLPLW 348
             +YNA D G+  VDVY+FPC  CGN A Q   M++YLK +N           YG +WLDIEGPQYW SQSENVAF   +++ +K  G +  +YTS SQWEPI G     S+ PLW
Sbjct:   63 SVYNARDAGIEYVDVYMFPCPTCGNGAGQAETMVNYLKGYNA---------NYGMVWLDIEGPQYWMSQSENVAFFESLVAGLKAEGAHIGVYTSASQWEPIMGGYTGGSEFPLW 168          
BLAST of mRNA_M-pyrifera_M_contig95172.21958.1 vs. uniprot
Match: F2U4U0_SALR5 (Lysozyme n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U4U0_SALR5)

HSP 1 Score: 126 bits (317), Expect = 6.640e-34
Identity = 60/116 (51.72%), Postives = 74/116 (63.79%), Query Frame = 1
Query:    7 IYNAWDGGMNNVDVYVFPCFRCGNPASQIGEMIHYLKSFNVVP-NPKGGKYTYGQIWLDIEGPQYWGSQ-SENVAFIREMISAVKGAGINCAIYTSESQWEPITGNANIASDLPLW 348
            IYNAWDGGM++VD+Y FPC  CGNPA QI  M+  L  +N+ P N K G  TYG +WLDIEGPQYW      N  F   ++S  K  GI+  +YT +SQW PI G+ +  S  PLW
Sbjct:   86 IYNAWDGGMDHVDIYFFPCPTCGNPAGQIDAMVANLAKYNIKPGNAKPG--TYGMLWLDIEGPQYWTKDVGANRNFFSGLVSQAKAHGIHLGVYTRQSQWSPIMGDWSGGSAFPLW 199          
BLAST of mRNA_M-pyrifera_M_contig95172.21958.1 vs. uniprot
Match: UPI000645136B (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000645136B)

HSP 1 Score: 122 bits (307), Expect = 1.120e-32
Identity = 55/117 (47.01%), Postives = 72/117 (61.54%), Query Frame = 1
Query:    4 QIYNAWDGGMNNVDVYVFPCFRCGNPASQIGEMIHYLKSFNVVPNPKGGKYTYGQIWLDIEGP-QYWGS-QSENVAFIREMISAVKGAGINCAIYTSESQWEPITGNANIASDLPLW 348
             IYNAWDGGM +VD Y+FPCF CG+ A Q+  M++Y+ S+            +G IW DIEGP  YW   Q  N AF  +M+S  + AG+N  +YTS SQWEPI G+ +  +  PLW
Sbjct:   67 SIYNAWDGGMQHVDAYIFPCFSCGDGAGQVVAMVNYINSYQA---------KFGMIWFDIEGPGTYWSDDQGANQAFFNDMVSGAQQAGVNVGVYTSSSQWEPIMGDWSGGASFPLW 174          
BLAST of mRNA_M-pyrifera_M_contig95172.21958.1 vs. uniprot
Match: A0A7S0LAX9_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LAX9_9EUKA)

HSP 1 Score: 122 bits (306), Expect = 2.260e-32
Identity = 56/122 (45.90%), Postives = 77/122 (63.11%), Query Frame = 1
Query:    1 SQIYNAWDGGMNNVDVYVFPCFRCGNPASQIGEMIHYLKS----FNVVPN-PKGGKYTYGQIWLDIEGPQYWGSQ-SENVAFIREMISAVKGAGINCAIYTSESQWEPITGNANIASDLPLW 348
            + ++NAW+GGM++VD Y+FPC+ CGNPA Q+ + I YL S    F    N  +    +YG +W+D+EG QYW S  S NV FI++M+   K  G++  IYTS SQW PITG +      PLW
Sbjct:   68 TTMHNAWNGGMSHVDGYIFPCYSCGNPAKQMDDTISYLSSHAVRFGGASNGTESVGVSYGMLWIDVEGTQYWSSSTSNNVNFIQQMVDEGKKKGVSIGIYTSNSQWSPITGGSTAFKSYPLW 189          
BLAST of mRNA_M-pyrifera_M_contig95172.21958.1 vs. uniprot
Match: F0ZPJ0_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZPJ0_DICPU)

HSP 1 Score: 120 bits (302), Expect = 5.870e-32
Identity = 58/117 (49.57%), Postives = 73/117 (62.39%), Query Frame = 1
Query:    4 QIYNAWDGGMNNVDVYVFPCFRCGNPASQIGEMIHYLKSFNVVPNPKGGKYTYGQIWLDIEGP-QYWGS-QSENVAFIREMISAVKGAGINCAIYTSESQWEPITGNANIASDLPLW 348
             +YNA D G+  VDVY+FPCF CGN A Q   M++YLKS+N           YG +WLDIEGP  YW S Q  N AF  E++S ++  G +  IYTSESQWEPI G+ +  +  PLW
Sbjct:   64 SVYNARDAGIEYVDVYLFPCFSCGNGAGQAVSMVNYLKSYNA---------NYGMVWLDIEGPGTYWSSNQGANQAFFNELVSGLESVGAHIGIYTSESQWEPIMGDWSGGAKYPLW 171          
BLAST of mRNA_M-pyrifera_M_contig95172.21958.1 vs. uniprot
Match: F4PGX6_CAVFA (Glycoside hydrolase family 25 protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PGX6_CAVFA)

HSP 1 Score: 120 bits (300), Expect = 1.270e-31
Identity = 55/117 (47.01%), Postives = 70/117 (59.83%), Query Frame = 1
Query:    4 QIYNAWDGGMNNVDVYVFPCFRCGNPASQIGEMIHYLKSFNVVPNPKGGKYTYGQIWLDIEGPQ-YWG-SQSENVAFIREMISAVKGAGINCAIYTSESQWEPITGNANIASDLPLW 348
             +YNAWDGGM +VD Y+FPCF CGN A Q+  M++Y+KS+N           YG +W DIEGP  YW  +Q++N AF   M++     G    IYTS SQW PI GN    +  PLW
Sbjct:   65 SMYNAWDGGMADVDAYMFPCFSCGNGAGQVESMVNYIKSYNA---------KYGMVWFDIEGPGVYWSDNQADNQAFFNSMVAGAHAVGAKVGIYTSASQWIPIMGNWAGGASFPLW 172          
BLAST of mRNA_M-pyrifera_M_contig95172.21958.1 vs. uniprot
Match: A9VAN2_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9VAN2_MONBE)

HSP 1 Score: 120 bits (301), Expect = 1.440e-31
Identity = 57/117 (48.72%), Postives = 76/117 (64.96%), Query Frame = 1
Query:    7 IYNAWDGGMNNVDVYVFPCFRCGNPASQIGEMIHYLKSFNVVPNPKGGKY--TYGQIWLDIEGPQYWGSQSE-NVAFIREMISAVKGAGINCAIYTSESQWEPITGNANIASDLPLW 348
            IYNAWDGGM++VD+Y+FP  R  NP SQ+  M+ +LK +++     GGK   ++G +WLDIEG QYW S  E N  F   ++S  K  G+   +YTSESQW PI G+ +  S LPLW
Sbjct:   63 IYNAWDGGMSHVDIYMFPDPRANNPESQMSSMVEFLKKYSIT---SGGKKPGSFGMVWLDIEGSQYWSSDKETNRKFFDGLVSEGKKHGLKLGVYTSESQWSPIMGDWSGGSSLPLW 176          
BLAST of mRNA_M-pyrifera_M_contig95172.21958.1 vs. uniprot
Match: A0A152A2E1_9MYCE (Glycoside hydrolase family 25 protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A2E1_9MYCE)

HSP 1 Score: 118 bits (296), Expect = 4.580e-31
Identity = 55/117 (47.01%), Postives = 69/117 (58.97%), Query Frame = 1
Query:    4 QIYNAWDGGMNNVDVYVFPCFRCGNPASQIGEMIHYLKSFNVVPNPKGGKYTYGQIWLDIEGP-QYWGS-QSENVAFIREMISAVKGAGINCAIYTSESQWEPITGNANIASDLPLW 348
             +YNAW+GGM +VD+YVFPCF CGN   Q+   I Y++S+N           +G +W DIEGP  YWG  QS N AF  +M+S  +  G +  IYTS SQW PI G     S  PLW
Sbjct:   63 SVYNAWEGGMADVDIYVFPCFSCGNGYGQVQSAIKYVQSYNA---------KFGMVWFDIEGPGTYWGGDQSSNAAFFADMVSGAQALGAHIGIYTSASQWIPIMGGYTGGSGFPLW 170          
BLAST of mRNA_M-pyrifera_M_contig95172.21958.1 vs. uniprot
Match: UPI0006448327 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006448327)

HSP 1 Score: 116 bits (291), Expect = 3.080e-30
Identity = 55/117 (47.01%), Postives = 73/117 (62.39%), Query Frame = 1
Query:    4 QIYNAWDGGMNNVDVYVFPCFRCGNPASQIGEMIHYLKSFNVVPNPKGGKYTYGQIWLDIEGP-QYWG-SQSENVAFIREMISAVKGAGINCAIYTSESQWEPITGNANIASDLPLW 348
             IYNA DGG+ +VD Y+FPC  CGN A Q+  M++Y+KS+         K T G++W DIEGP  YW  S ++N AF   M+   K AG++  +YTS SQWEPI G+ +    LPLW
Sbjct:   71 SIYNAKDGGITDVDAYIFPCTSCGNGAGQVVAMVNYIKSY---------KATVGRVWFDIEGPGTYWSNSHADNQAFFNSMLEGAKQAGVSVGVYTSASQWEPIMGSWDGGKALPLW 178          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95172.21958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F2URK2_SALR51.340e-3553.04Glycoside hydrolase family 25 protein n=1 Tax=Salp... [more]
LYSG2_DICDI1.850e-3550.43Probable GH family 25 lysozyme 2 n=1 Tax=Dictyoste... [more]
F2U4U0_SALR56.640e-3451.72Lysozyme n=1 Tax=Salpingoeca rosetta (strain ATCC ... [more]
UPI000645136B1.120e-3247.01hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A7S0LAX9_9EUKA2.260e-3245.90Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
F0ZPJ0_DICPU5.870e-3249.57Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
F4PGX6_CAVFA1.270e-3147.01Glycoside hydrolase family 25 protein n=1 Tax=Cave... [more]
A9VAN2_MONBE1.440e-3148.72Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A152A2E1_9MYCE4.580e-3147.01Glycoside hydrolase family 25 protein n=1 Tax=Tieg... [more]
UPI00064483273.080e-3047.01hypothetical protein n=1 Tax=Acytostelium subglobo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95172contigM-pyrifera_M_contig95172:24..371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.0
Seed ortholog evalue1.3e-24
Seed eggNOG ortholog44689.DDB0252580
Hectar predicted targeting categoryother localisation
GOsGO:0000270,GO:0003674,GO:0003796,GO:0003824,GO:0004553,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006022,GO:0006026,GO:0006027,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009253,GO:0009605,GO:0009607,GO:0009617,GO:0016787,GO:0016798,GO:0030203,GO:0031410,GO:0031982,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044444,GO:0044464,GO:0050830,GO:0050896,GO:0051704,GO:0051707,GO:0061783,GO:0071704,GO:0097708,GO:0098542,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.cell wall macromolecule catabolic process
EggNOG OGs2D8YH@1,2S1SN@2759,3X8RU@554915
COG Functional cat.G
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
Exons1
Model size348
Cds size318
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816866.3097754-UTR-M-pyrifera_M_contig95172:23..531622816866.3097754-UTR-M-pyrifera_M_contig95172:23..53Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig95172 24..53 +
1692278224.579486-UTR-M-pyrifera_M_contig95172:23..531692278224.579486-UTR-M-pyrifera_M_contig95172:23..53Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig95172 24..53 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816866.32393-CDS-M-pyrifera_M_contig95172:53..3711622816866.32393-CDS-M-pyrifera_M_contig95172:53..371Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95172 54..371 +
1692278224.5968783-CDS-M-pyrifera_M_contig95172:53..3711692278224.5968783-CDS-M-pyrifera_M_contig95172:53..371Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95172 54..371 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95172.21958.1prot_M-pyrifera_M_contig95172.21958.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95172 54..371 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95172.21958.1

>prot_M-pyrifera_M_contig95172.21958.1 ID=prot_M-pyrifera_M_contig95172.21958.1|Name=mRNA_M-pyrifera_M_contig95172.21958.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
MNNVDVYVFPCFRCGNPASQIGEMIHYLKSFNVVPNPKGGKYTYGQIWLD
IEGPQYWGSQSENVAFIREMISAVKGAGINCAIYTSESQWEPITGNANIA
SDLPLW
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mRNA from alignment at M-pyrifera_M_contig95172:24..371+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95172.21958.1 ID=mRNA_M-pyrifera_M_contig95172.21958.1|Name=mRNA_M-pyrifera_M_contig95172.21958.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig95172:24..371+ (Macrocystis pyrifera P11B4 male)
TCTCAGATTTACAATGCTTGGGACGGTGGTATGAACAACGTCGACGTGTA CGTGTTCCCTTGCTTCCGTTGCGGTAACCCCGCGAGTCAGATTGGCGAGA TGATCCACTATTTGAAGAGTTTCAACGTGGTTCCAAATCCCAAGGGTGGG AAGTACACGTATGGTCAGATTTGGCTGGACATTGAAGGCCCTCAGTATTG GGGCTCTCAGTCGGAGAACGTGGCCTTTATTCGTGAGATGATCAGCGCCG TGAAGGGTGCCGGCATCAACTGCGCAATCTACACTTCGGAATCCCAGTGG GAACCCATCACTGGAAACGCTAACATCGCATCAGACCTCCCACTGTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95172:24..371+

>mRNA_M-pyrifera_M_contig95172.21958.1 ID=mRNA_M-pyrifera_M_contig95172.21958.1|Name=mRNA_M-pyrifera_M_contig95172.21958.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig95172:24..371+ (Macrocystis pyrifera P11B4 male)
ATGAACAACGTCGACGTGTACGTGTTCCCTTGCTTCCGTTGCGGTAACCC
CGCGAGTCAGATTGGCGAGATGATCCACTATTTGAAGAGTTTCAACGTGG
TTCCAAATCCCAAGGGTGGGAAGTACACGTATGGTCAGATTTGGCTGGAC
ATTGAAGGCCCTCAGTATTGGGGCTCTCAGTCGGAGAACGTGGCCTTTAT
TCGTGAGATGATCAGCGCCGTGAAGGGTGCCGGCATCAACTGCGCAATCT
ACACTTCGGAATCCCAGTGGGAACCCATCACTGGAAACGCTAACATCGCA
TCAGACCTCCCACTGTGGATGAACAACGTCGACGTGTACGTGTTCCCTTG
CTTCCGTTGCGGTAACCCCGCGAGTCAGATTGGCGAGATGATCCACTATT
TGAAGAGTTTCAACGTGGTTCCAAATCCCAAGGGTGGGAAGTACACGTAT
GGTCAGATTTGGCTGGACATTGAAGGCCCTCAGTATTGGGGCTCTCAGTC
GGAGAACGTGGCCTTTATTCGTGAGATGATCAGCGCCGTGAAGGGTGCCG
GCATCAACTGCGCAATCTACACTTCGGAATCCCAGTGGGAACCCATCACT
GGAAACGCTAACATCGCATCAGACCTCCCACTGTGG
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