mRNA_M-pyrifera_M_contig95170.21957.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95170.21957.1
Unique NamemRNA_M-pyrifera_M_contig95170.21957.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95170.21957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95170contigM-pyrifera_M_contig95170:335..619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size285
Cds size276
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816866.257157-UTR-M-pyrifera_M_contig95170:334..3431622816866.257157-UTR-M-pyrifera_M_contig95170:334..343Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig95170 335..343 +
1692278224.557983-UTR-M-pyrifera_M_contig95170:334..3431692278224.557983-UTR-M-pyrifera_M_contig95170:334..343Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig95170 335..343 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816866.2713056-CDS-M-pyrifera_M_contig95170:343..6191622816866.2713056-CDS-M-pyrifera_M_contig95170:343..619Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95170 344..619 +
1692278224.568595-CDS-M-pyrifera_M_contig95170:343..6191692278224.568595-CDS-M-pyrifera_M_contig95170:343..619Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95170 344..619 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95170.21957.1prot_M-pyrifera_M_contig95170.21957.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95170 344..619 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95170.21957.1

>prot_M-pyrifera_M_contig95170.21957.1 ID=prot_M-pyrifera_M_contig95170.21957.1|Name=mRNA_M-pyrifera_M_contig95170.21957.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=92bp
MQPAYFDEHGEFFDLDWLELPGELLSDVFAWNEDYQWIVPLSMEERALGP
IRKAIVDLDERGLELTSRLRAALGLDEVEYYSEGFLRSVRDV
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mRNA from alignment at M-pyrifera_M_contig95170:335..619+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95170.21957.1 ID=mRNA_M-pyrifera_M_contig95170.21957.1|Name=mRNA_M-pyrifera_M_contig95170.21957.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=285bp|location=Sequence derived from alignment at M-pyrifera_M_contig95170:335..619+ (Macrocystis pyrifera P11B4 male)
GCCGACTGCATGCAGCCGGCGTACTTCGATGAGCACGGCGAGTTCTTCGA
TCTCGACTGGCTCGAGCTCCCCGGCGAGCTGCTCTCCGACGTGTTCGCTT
GGAACGAGGACTATCAGTGGATCGTGCCGTTGAGCATGGAGGAGCGCGCG
TTGGGACCCATTCGAAAGGCCATCGTCGATCTCGACGAGCGCGGGCTCGA
GCTGACCTCCAGGCTGCGCGCGGCGCTGGGGCTCGATGAGGTCGAGTACT
ACAGCGAGGGCTTCCTGCGGAGCGTCCGGGACGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95170:335..619+

>mRNA_M-pyrifera_M_contig95170.21957.1 ID=mRNA_M-pyrifera_M_contig95170.21957.1|Name=mRNA_M-pyrifera_M_contig95170.21957.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig95170:335..619+ (Macrocystis pyrifera P11B4 male)
ATGCAGCCGGCGTACTTCGATGAGCACGGCGAGTTCTTCGATCTCGACTG
GCTCGAGCTCCCCGGCGAGCTGCTCTCCGACGTGTTCGCTTGGAACGAGG
ACTATCAGTGGATCGTGCCGTTGAGCATGGAGGAGCGCGCGTTGGGACCC
ATTCGAAAGGCCATCGTCGATCTCGACGAGCGCGGGCTCGAGCTGACCTC
CAGGCTGCGCGCGGCGCTGGGGCTCGATGAGGTCGAGTACTACAGCGAGG
GCTTCCTGCGGAGCGTCCGGGACGTGATGCAGCCGGCGTACTTCGATGAG
CACGGCGAGTTCTTCGATCTCGACTGGCTCGAGCTCCCCGGCGAGCTGCT
CTCCGACGTGTTCGCTTGGAACGAGGACTATCAGTGGATCGTGCCGTTGA
GCATGGAGGAGCGCGCGTTGGGACCCATTCGAAAGGCCATCGTCGATCTC
GACGAGCGCGGGCTCGAGCTGACCTCCAGGCTGCGCGCGGCGCTGGGGCT
CGATGAGGTCGAGTACTACAGCGAGGGCTTCCTGCGGAGCGTCCGGGACG
TG
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