mRNA_M-pyrifera_M_contig95165.21955.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95165.21955.1
Unique NamemRNA_M-pyrifera_M_contig95165.21955.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig95165.21955.1 vs. uniprot
Match: A0A7S2MUF0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2MUF0_9EUKA)

HSP 1 Score: 99.0 bits (245), Expect = 3.860e-24
Identity = 52/96 (54.17%), Postives = 72/96 (75.00%), Query Frame = 1 
Query:    4 GDDSQPRYMKRRVRPGLIDLDMEERVLVVHYDVEATVLGEHGEALRTERKSHKKRILVKELNEHSDIPRLAVELVERNKLIRECDLAHVQGLLYEL 291
            G DS+ RYM+R+V+ GLI+ D EE  +VVHY+VEATVLGE GE +  ER+ + KRI +K LNE+++IPRLA E++E+ KLI    L+ V+ LL +L
Sbjct:   31 GQDSEARYMRRKVKAGLIEADHEECAIVVHYEVEATVLGELGEPIVAERQDNTKRIKLKTLNENTNIPRLAEEILEKCKLIHASKLSQVEQLLQQL 126
[Close]
BLAST of mRNA_M-pyrifera_M_contig95165.21955.1 vs. uniprot
Match: A0A7S1C9Z9_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C9Z9_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.340e-21
Identity = 51/96 (53.12%), Postives = 71/96 (73.96%), Query Frame = 1 
Query:   19 PRYMKRRVRPGLIDLDMEERVLVVHYDVEATVLGEHGEALRTERKSHKKRILVKELNEHSDIPRLAVELVERNKLIRECDLAHVQGLLYELQKHDV 306
            P YMKR+V+ G ID+D+E   LVV+Y+VEA VLG HGE ++ + K+ KK I +K+LNEHS+IP LA ++V++  LI E  L  V+ LLYELQ++ V
Sbjct:    4 PAYMKRKVKYGSIDVDLEANSLVVNYEVEAAVLGGHGEVMKNDTKAFKKIIKLKQLNEHSNIPLLAEDVVDKCDLIHEDSLPLVERLLYELQRYQV 99
[Close]
BLAST of mRNA_M-pyrifera_M_contig95165.21955.1 vs. uniprot
Match: A0A0M0JKG8_9EUKA (Kinesin-associated protein 3 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JKG8_9EUKA)

HSP 1 Score: 94.4 bits (233), Expect = 2.250e-20
Identity = 50/94 (53.19%), Postives = 71/94 (75.53%), Query Frame = 1 
Query:   10 DSQPRYMKRRVRPGLIDLDMEERVLVVHYDVEATVLGEHGEALRTERKSHKKRILVKELNEHSDIPRLAVELVERNKLIRECDLAHVQGLLYEL 291
            +S+ RYM+R+V+ GLI+ D EE  +VVHY+VEATVLGE GE +  ER+ + KRI +K L+E+++IPRLA E++E+ KLI    L+ V+ LL EL
Sbjct:    2 ESEARYMRRKVKAGLIEADHEECAIVVHYEVEATVLGELGEPIVAERQENTKRIKLKTLSENTNIPRLAEEILEKCKLIHASKLSQVEQLLQEL 95
[Close]
BLAST of mRNA_M-pyrifera_M_contig95165.21955.1 vs. uniprot
Match: A0A2H1BUK6_FASHE (Uncharacterized protein n=1 Tax=Fasciola hepatica TaxID=6192 RepID=A0A2H1BUK6_FASHE)

HSP 1 Score: 81.3 bits (199), Expect = 1.180e-17
Identity = 43/99 (43.43%), Postives = 68/99 (68.69%), Query Frame = 1 
Query:    1 MGDDSQPRYMKRRVRPGLIDLDMEERVLVVHYDVEATVLGEHGEALRTERKSHKKRILVKELNEHSDIPRLAVELVERNKLIRECDLAHVQGLLYELQK 297
            MG+D+  +++KR++R G ID+   E+ L+VHY+ EAT+LGE G  +  +RK  +K I VK LNE++D+P LA ++V+  KLI E  +  ++ LL+ L K
Sbjct:    1 MGEDA--KFLKRKIRGGSIDVHPTEKALIVHYETEATILGELGNPVVGDRKECQKVIRVKNLNENTDVPELARKIVDNCKLISETKIPQIEHLLHYLLK 97
[Close]
BLAST of mRNA_M-pyrifera_M_contig95165.21955.1 vs. uniprot
Match: A0A2D4NS65_MICSU (Uncharacterized protein (Fragment) n=1 Tax=Micrurus surinamensis TaxID=129470 RepID=A0A2D4NS65_MICSU)

HSP 1 Score: 84.0 bits (206), Expect = 1.910e-17
Identity = 48/97 (49.48%), Postives = 67/97 (69.07%), Query Frame = 1 
Query:    4 GDDSQPRYMKRRVRPGLIDLDMEERVLVVHYDVEATVLGEHGEALRTERKSHKKRILVKELNEHSDIPRLAVELVERNKLIRECDLAHVQGLLYELQ 294
            G+D+  RY+KR+V+ G ID+   E+ L+VHY+VEAT+LGE G+ +  ERK  +K I +K LN ++DI  LA ++VE  KLI    LA V+ LLY LQ
Sbjct:   14 GEDA--RYLKRKVKGGNIDVHPSEKALIVHYEVEATILGEMGDPMLGERKECQKIIRLKSLNANTDISSLARKVVEECKLIHPSKLAEVEQLLYYLQ 108
[Close]
BLAST of mRNA_M-pyrifera_M_contig95165.21955.1 vs. uniprot
Match: UPI001B7E263D (kinesin-associated protein 3a isoform X3 n=1 Tax=Carcharodon carcharias TaxID=13397 RepID=UPI001B7E263D)

HSP 1 Score: 85.5 bits (210), Expect = 2.860e-17
Identity = 48/91 (52.75%), Postives = 64/91 (70.33%), Query Frame = 1 
Query:   22 RYMKRRVRPGLIDLDMEERVLVVHYDVEATVLGEHGEALRTERKSHKKRILVKELNEHSDIPRLAVELVERNKLIRECDLAHVQGLLYELQ 294
            RY+KR+V+ G ID+   E+ LVVHY+VEAT+LGE G+A+  ERK  +K I +K LN ++DI  LA ++VE  KLI    LA V+ LLY LQ
Sbjct:    7 RYLKRKVKAGNIDVHPTEKALVVHYEVEATILGEMGDAMLGERKECQKIIRLKSLNANTDIASLARKVVEECKLIHPSKLAEVEQLLYYLQ 97
[Close]
BLAST of mRNA_M-pyrifera_M_contig95165.21955.1 vs. uniprot
Match: A0A556TRP8_BAGYA (Kinesin-associated protein 3 n=1 Tax=Bagarius yarrelli TaxID=175774 RepID=A0A556TRP8_BAGYA)

HSP 1 Score: 85.5 bits (210), Expect = 2.880e-17
Identity = 46/96 (47.92%), Postives = 70/96 (72.92%), Query Frame = 1 
Query:    7 DDSQPRYMKRRVRPGLIDLDMEERVLVVHYDVEATVLGEHGEALRTERKSHKKRILVKELNEHSDIPRLAVELVERNKLIRECDLAHVQGLLYELQ 294
            DD+Q  Y+KR+V+PG ID+   E+ LVVHY+VEA++LGE+G+++R ERK  +K I +K LN ++D+  LA ++V+  KLI    +A V+ LL+ LQ
Sbjct:  223 DDAQ--YLKRKVKPGNIDVHPTEKALVVHYEVEASILGENGDSVREERKECQKVIRLKSLNANTDVSSLARKVVDECKLIHPSKVAEVEHLLFYLQ 316
[Close]
BLAST of mRNA_M-pyrifera_M_contig95165.21955.1 vs. uniprot
Match: A0A7S4B004_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B004_CHRCT)

HSP 1 Score: 85.1 bits (209), Expect = 3.930e-17
Identity = 46/99 (46.46%), Postives = 69/99 (69.70%), Query Frame = 1 
Query:   10 DSQPRYMKRRVRPGLIDLDMEERVLVVHYDVEATVLGEHGEALRTERKSHKKRILVKELNEHSDIPRLAVELVERNKLIRECDLAHVQGLLYELQKHDV 306
            +S+ RYM+R+V+ G I+ D +E  L+VHY+VEATVLGE GE +  ER+   ++I +K L   S+I RLA E+VE+ KLI E  +  V+ L+ ELQ+ ++
Sbjct:    8 ESEARYMRRKVKAGKIEADPDECALLVHYEVEATVLGELGEPMLAEREQKTQKIKLKTLGADSNIARLAEEIVEKCKLIPETKIGQVELLIRELQQREL 106
[Close]
BLAST of mRNA_M-pyrifera_M_contig95165.21955.1 vs. uniprot
Match: A0A401P0H3_SCYTO (Uncharacterized protein n=5 Tax=Elasmobranchii TaxID=7778 RepID=A0A401P0H3_SCYTO)

HSP 1 Score: 84.7 bits (208), Expect = 5.260e-17
Identity = 47/91 (51.65%), Postives = 64/91 (70.33%), Query Frame = 1 
Query:   22 RYMKRRVRPGLIDLDMEERVLVVHYDVEATVLGEHGEALRTERKSHKKRILVKELNEHSDIPRLAVELVERNKLIRECDLAHVQGLLYELQ 294
            RY+KR+V+ G ID+   E+ LVVHY+VEAT+LGE G+A+  ERK  +K I +K LN ++D+  LA ++VE  KLI    LA V+ LLY LQ
Sbjct:    7 RYLKRKVKGGNIDVHPTEKALVVHYEVEATILGEMGDAMLGERKECQKIIRLKSLNANTDVASLARKVVEECKLIHPSKLAEVEQLLYYLQ 97
[Close]
BLAST of mRNA_M-pyrifera_M_contig95165.21955.1 vs. uniprot
Match: UPI000F0A3222 (kinesin-associated protein 3b isoform X1 n=5 Tax=Characiphysae TaxID=186628 RepID=UPI000F0A3222)

HSP 1 Score: 84.3 bits (207), Expect = 7.290e-17
Identity = 46/96 (47.92%), Postives = 66/96 (68.75%), Query Frame = 1 
Query:    7 DDSQPRYMKRRVRPGLIDLDMEERVLVVHYDVEATVLGEHGEALRTERKSHKKRILVKELNEHSDIPRLAVELVERNKLIRECDLAHVQGLLYELQ 294
            DD+Q  Y+KR+V+PG ID+   E+ LVVHY+VEA +LGE G+A+  ERK  +K I ++ LN  +D+  LA ++VE  KLI    LA V+ L++ LQ
Sbjct:    4 DDAQ--YLKRKVKPGNIDVHPTEKALVVHYEVEAAILGEKGDAMHEERKESQKIIRLRSLNASTDVASLARKVVEECKLIHPSKLAEVEHLIFYLQ 97
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95165.21955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2MUF0_9EUKA3.860e-2454.17Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7S1C9Z9_9STRA1.340e-2153.13Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A0M0JKG8_9EUKA2.250e-2053.19Kinesin-associated protein 3 n=1 Tax=Chrysochromul... [more]
A0A2H1BUK6_FASHE1.180e-1743.43Uncharacterized protein n=1 Tax=Fasciola hepatica ... [more]
A0A2D4NS65_MICSU1.910e-1749.48Uncharacterized protein (Fragment) n=1 Tax=Micruru... [more]
UPI001B7E263D2.860e-1752.75kinesin-associated protein 3a isoform X3 n=1 Tax=C... [more]
A0A556TRP8_BAGYA2.880e-1747.92Kinesin-associated protein 3 n=1 Tax=Bagarius yarr... [more]
A0A7S4B004_CHRCT3.930e-1746.46Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A401P0H3_SCYTO5.260e-1751.65Uncharacterized protein n=5 Tax=Elasmobranchii Tax... [more]
UPI000F0A32227.290e-1747.92kinesin-associated protein 3b isoform X1 n=5 Tax=C... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95165contigM-pyrifera_M_contig95165:147..614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score87.4
Seed ortholog evalue4.1e-15
Seed eggNOG ortholog176946.XP_007432604.1
Preferred nameKIFAP3
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0000228,GO:0000793,GO:0000794,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0003008,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005783,GO:0005794,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005871,GO:0005875,GO:0005886,GO:0005929,GO:0005930,GO:0006810,GO:0006890,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007154,GO:0007163,GO:0007165,GO:0007600,GO:0007605,GO:0007606,GO:0007608,GO:0008088,GO:0008089,GO:0008092,GO:0008104,GO:0008150,GO:0008285,GO:0009987,GO:0010638,GO:0010639,GO:0010941,GO:0010970,GO:0012505,GO:0015630,GO:0016020,GO:0016043,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016939,GO:0017111,GO:0019882,GO:0019884,GO:0019886,GO:0019894,GO:0022407,GO:0022409,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030155,GO:0030705,GO:0030951,GO:0030952,GO:0030993,GO:0031344,GO:0031345,GO:0031346,GO:0031503,GO:0031974,GO:0031981,GO:0032391,GO:0032501,GO:0032838,GO:0032991,GO:0033036,GO:0033043,GO:0035720,GO:0035735,GO:0035869,GO:0036064,GO:0042073,GO:0042127,GO:0042981,GO:0042995,GO:0043005,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044459,GO:0044463,GO:0044464,GO:0044782,GO:0045724,GO:0045785,GO:0046586,GO:0046587,GO:0046907,GO:0047496,GO:0048002,GO:0048193,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050954,GO:0051128,GO:0051129,GO:0051130,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051716,GO:0060271,GO:0060491,GO:0060548,GO:0065003,GO:0065007,GO:0070013,GO:0070925,GO:0071840,GO:0071944,GO:0072383,GO:0072384,GO:0072386,GO:0097014,GO:0097458,GO:0097542,GO:0097730,GO:0097731,GO:0097733,GO:0098590,GO:0098930,GO:0099111,GO:0099518,GO:0099568,GO:0120025,GO:0120031,GO:0120032,GO:0120033,GO:0120034,GO:0120035,GO:0120036,GO:0120038,GO:1902017,GO:1902018,GO:1902115,GO:1902116,GO:1902117,GO:1902855,GO:1902856,GO:1902857,GO:1905515,GO:1990075
EggNOG free text desc.positive regulation of calcium-dependent cell-cell adhesion
EggNOG OGs38BDP@33154,3BA64@33208,3CYW2@33213,4823H@7711,4907Z@7742,KOG1222@1,KOG1222@2759
COG Functional cat.U
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
Exons3
Model size306
Cds size306
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95165.21955.1prot_M-pyrifera_M_contig95165.21955.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95165 147..614 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816866.1571884-CDS-M-pyrifera_M_contig95165:146..2851622816866.1571884-CDS-M-pyrifera_M_contig95165:146..285Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95165 147..285 -
1692278224.512846-CDS-M-pyrifera_M_contig95165:146..2851692278224.512846-CDS-M-pyrifera_M_contig95165:146..285Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95165 147..285 -
1622816866.1728594-CDS-M-pyrifera_M_contig95165:376..4821622816866.1728594-CDS-M-pyrifera_M_contig95165:376..482Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95165 377..482 -
1692278224.52563-CDS-M-pyrifera_M_contig95165:376..4821692278224.52563-CDS-M-pyrifera_M_contig95165:376..482Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95165 377..482 -
1622816866.187163-CDS-M-pyrifera_M_contig95165:553..6141622816866.187163-CDS-M-pyrifera_M_contig95165:553..614Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95165 554..614 -
1692278224.5355744-CDS-M-pyrifera_M_contig95165:553..6141692278224.5355744-CDS-M-pyrifera_M_contig95165:553..614Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95165 554..614 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95165.21955.1

>prot_M-pyrifera_M_contig95165.21955.1 ID=prot_M-pyrifera_M_contig95165.21955.1|Name=mRNA_M-pyrifera_M_contig95165.21955.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
MGDDSQPRYMKRRVRPGLIDLDMEERVLVVHYDVEATVLGEHGEALRTER
KSHKKRILVKELNEHSDIPRLAVELVERNKLIRECDLAHVQGLLYELQKH
DV
back to top

mRNA from alignment at M-pyrifera_M_contig95165:147..614-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95165.21955.1 ID=mRNA_M-pyrifera_M_contig95165.21955.1|Name=mRNA_M-pyrifera_M_contig95165.21955.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig95165:147..614- (Macrocystis pyrifera P11B4 male)
ATGGGGGACGATTCGCAGCCACGTTACATGAAGCGGCGGGTTCGTCCAGG
GTTGATCGATTGTACGTGACAGGGGGCGAGTACATGGCCTCTTGCCAGTG
CCTGTGCTCATGCGCTACGTTTGTGTGTGCAGTGGACATGGAAGAGCGCG
TGCTTGTCGTGCACTACGATGTGGAGGCAACGGTTCTTGGCGAGCATGGC
GAAGCGTTGCGAACGGAGCGCAAGAGCCACAAGAAGCGGTGCGTCTCACC
CTGCCCGTGCCGCCTCTTGCATTGATGCTGTGATGTGCTGTGCCGGCGTG
GCTGACTGACGCTTCCGTGGTGTGTGCAGTATCCTGGTGAAGGAGCTGAA
TGAGCACTCGGACATCCCGCGGCTGGCTGTGGAGCTGGTGGAGCGCAACA
AGCTGATTCGGGAATGCGATTTGGCGCACGTGCAAGGCCTGCTATACGAG
CTGCAGAAGCACGACGTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig95165:147..614-

>mRNA_M-pyrifera_M_contig95165.21955.1 ID=mRNA_M-pyrifera_M_contig95165.21955.1|Name=mRNA_M-pyrifera_M_contig95165.21955.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig95165:147..614- (Macrocystis pyrifera P11B4 male)
ATGGGGGACGATTCGCAGCCACGTTACATGAAGCGGCGGGTTCGTCCAGG
GTTGATCGATTATGGGGGACGATTCGCAGCCACGTTACATGAAGCGGCGG
GTTCGTCCAGGGTTGATCGATTTGGACATGGAAGAGCGCGTGCTTGTCGT
GCACTACGATGTGGAGGCAACGGTTCTTGGCGAGCATGGCGAAGCGTTGC
GAACGGAGCGCAAGAGCCACAAGAAGCGTGGACATGGAAGAGCGCGTGCT
TGTCGTGCACTACGATGTGGAGGCAACGGTTCTTGGCGAGCATGGCGAAG
CGTTGCGAACGGAGCGCAAGAGCCACAAGAAGCGTATCCTGGTGAAGGAG
CTGAATGAGCACTCGGACATCCCGCGGCTGGCTGTGGAGCTGGTGGAGCG
CAACAAGCTGATTCGGGAATGCGATTTGGCGCACGTGCAAGGCCTGCTAT
ACGAGCTGCAGAAGCACGACGTGTATCCTGGTGAAGGAGCTGAATGAGCA
CTCGGACATCCCGCGGCTGGCTGTGGAGCTGGTGGAGCGCAACAAGCTGA
TTCGGGAATGCGATTTGGCGCACGTGCAAGGCCTGCTATACGAGCTGCAG
AAGCACGACGTG
back to top