mRNA_M-pyrifera_M_contig95093.21948.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95093.21948.1
Unique NamemRNA_M-pyrifera_M_contig95093.21948.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig95093.21948.1 vs. uniprot
Match: A0A7X5WUQ4_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WUQ4_9ACTN)

HSP 1 Score: 146 bits (369), Expect = 8.040e-42
Identity = 70/151 (46.36%), Postives = 96/151 (63.58%), Query Frame = 1 
Query:    4 GATNWDSGANADPGYTVTSGPSGLIELDAGNVITWRRPVAEDTRLAGAASLRAYVAAPGFDTTVSGAVAAGISDCERVFAGCTTIAAGQISYSQSGFGSDFGLITIDFGYIDHIVPDGHNIVVSMTAPQSAGTDSWLAFGTADYPSQLRLL 456
            GA NWD+GAN DPG T++  P GL+E+ A +V  WR    +D  L+G  SLR +VA  GFDT   G +  G+  C     GCTTI  G   +SQ+ FG+DFG + ID G IDH VP G+++VV++  P S  +D W+AFG++ +PS  RL+
Sbjct:   36 GAVNWDAGANGDPGLTLSPDPGGLVEISAPHVGAWRTTATDDIVLSGRGSLRLFVAVAGFDTDRFGGMLGGLVTCTAGITGCTTIGQGSAVFSQASFGADFGELWIDLGQIDHTVPAGNSLVVTLAVPGSMTSDMWIAFGSSSHPSAFRLI 186
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95093.21948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7X5WUQ4_9ACTN8.040e-4246.36Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95093contigM-pyrifera_M_contig95093:76..534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size459
Cds size459
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816865.8724675-CDS-M-pyrifera_M_contig95093:75..5341622816865.8724675-CDS-M-pyrifera_M_contig95093:75..534Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95093 76..534 -
1692278224.3637826-CDS-M-pyrifera_M_contig95093:75..5341692278224.3637826-CDS-M-pyrifera_M_contig95093:75..534Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95093 76..534 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95093.21948.1prot_M-pyrifera_M_contig95093.21948.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95093 76..534 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95093.21948.1

>prot_M-pyrifera_M_contig95093.21948.1 ID=prot_M-pyrifera_M_contig95093.21948.1|Name=mRNA_M-pyrifera_M_contig95093.21948.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=153bp
TGATNWDSGANADPGYTVTSGPSGLIELDAGNVITWRRPVAEDTRLAGAA
SLRAYVAAPGFDTTVSGAVAAGISDCERVFAGCTTIAAGQISYSQSGFGS
DFGLITIDFGYIDHIVPDGHNIVVSMTAPQSAGTDSWLAFGTADYPSQLR
LL*
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mRNA from alignment at M-pyrifera_M_contig95093:76..534-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95093.21948.1 ID=mRNA_M-pyrifera_M_contig95093.21948.1|Name=mRNA_M-pyrifera_M_contig95093.21948.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=459bp|location=Sequence derived from alignment at M-pyrifera_M_contig95093:76..534- (Macrocystis pyrifera P11B4 male)
ACCGGCGCCACGAACTGGGACAGCGGCGCCAACGCCGACCCTGGCTACAC
CGTCACCTCGGGACCGTCCGGGCTGATCGAGCTGGACGCCGGCAACGTGA
TCACCTGGAGGAGACCGGTCGCCGAGGACACTCGTCTCGCCGGCGCGGCC
TCGCTTCGCGCCTATGTCGCCGCCCCCGGGTTCGACACCACGGTGTCGGG
CGCCGTCGCCGCGGGCATCTCCGACTGCGAGCGGGTGTTCGCCGGATGCA
CCACGATCGCCGCCGGCCAGATCTCGTACTCGCAGTCGGGGTTCGGTTCC
GACTTCGGGCTCATCACCATCGACTTCGGCTACATCGATCACATCGTCCC
CGACGGCCACAACATCGTTGTGAGTATGACGGCGCCCCAATCGGCCGGCA
CCGACTCTTGGCTCGCCTTCGGCACCGCCGACTACCCGTCGCAGCTCCGC
CTGCTCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95093:76..534-

>mRNA_M-pyrifera_M_contig95093.21948.1 ID=mRNA_M-pyrifera_M_contig95093.21948.1|Name=mRNA_M-pyrifera_M_contig95093.21948.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=918bp|location=Sequence derived from alignment at M-pyrifera_M_contig95093:76..534- (Macrocystis pyrifera P11B4 male)
ACCGGCGCCACGAACTGGGACAGCGGCGCCAACGCCGACCCTGGCTACAC
CGTCACCTCGGGACCGTCCGGGCTGATCGAGCTGGACGCCGGCAACGTGA
TCACCTGGAGGAGACCGGTCGCCGAGGACACTCGTCTCGCCGGCGCGGCC
TCGCTTCGCGCCTATGTCGCCGCCCCCGGGTTCGACACCACGGTGTCGGG
CGCCGTCGCCGCGGGCATCTCCGACTGCGAGCGGGTGTTCGCCGGATGCA
CCACGATCGCCGCCGGCCAGATCTCGTACTCGCAGTCGGGGTTCGGTTCC
GACTTCGGGCTCATCACCATCGACTTCGGCTACATCGATCACATCGTCCC
CGACGGCCACAACATCGTTGTGAGTATGACGGCGCCCCAATCGGCCGGCA
CCGACTCTTGGCTCGCCTTCGGCACCGCCGACTACCCGTCGCAGCTCCGC
CTGCTCTGAACCGGCGCCACGAACTGGGACAGCGGCGCCAACGCCGACCC
TGGCTACACCGTCACCTCGGGACCGTCCGGGCTGATCGAGCTGGACGCCG
GCAACGTGATCACCTGGAGGAGACCGGTCGCCGAGGACACTCGTCTCGCC
GGCGCGGCCTCGCTTCGCGCCTATGTCGCCGCCCCCGGGTTCGACACCAC
GGTGTCGGGCGCCGTCGCCGCGGGCATCTCCGACTGCGAGCGGGTGTTCG
CCGGATGCACCACGATCGCCGCCGGCCAGATCTCGTACTCGCAGTCGGGG
TTCGGTTCCGACTTCGGGCTCATCACCATCGACTTCGGCTACATCGATCA
CATCGTCCCCGACGGCCACAACATCGTTGTGAGTATGACGGCGCCCCAAT
CGGCCGGCACCGACTCTTGGCTCGCCTTCGGCACCGCCGACTACCCGTCG
CAGCTCCGCCTGCTCTGA
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