mRNA_M-pyrifera_M_contig95073.21942.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95073.21942.1
Unique NamemRNA_M-pyrifera_M_contig95073.21942.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig95073.21942.1 vs. uniprot
Match: A0A7J7PL49_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PL49_9CHLO)

HSP 1 Score: 105 bits (262), Expect = 4.300e-24
Identity = 54/126 (42.86%), Postives = 76/126 (60.32%), Query Frame = 1
Query:    1 QFKHCVSSMPLPKALSMVGRHDLTDALTSTSTLVMLIGVRGTAPRVPVNWAYYPQSHLPFYRVTVFSRYAPGHVPAADVQLPTLFTV----ASAADAAGDAE-GDEGAGPYWSLLLETTECSYRGV 363
            Q+K+ +SS+PL   LS +G+ +  + L  +ST ++ +GVRG  P     W Y+P+ + PFYR TVFS YA  + P + VQLPTL       A AADAAG      +  GPYWSL+ E +E S++ V
Sbjct:  260 QYKNVISSLPLDTTLSWLGKREWAEGLQYSSTHIIGVGVRGACPHGSKCWLYFPEDNCPFYRTTVFSNYAEANCPGSSVQLPTLCLADGSGAVAADAAGKGNTSSKAVGPYWSLMFEVSESSFKTV 385          
BLAST of mRNA_M-pyrifera_M_contig95073.21942.1 vs. uniprot
Match: A0A383WHX1_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WHX1_TETOB)

HSP 1 Score: 103 bits (257), Expect = 4.350e-24
Identity = 54/123 (43.90%), Postives = 76/123 (61.79%), Query Frame = 1
Query:    1 QFKHCVSSMPLPKALSMVGRHDLTDALTSTSTLVMLIGVRGTAPRVPVNWAYYPQSHLPFYRVTVFSRYAPGHVPAADVQLPTLFTV--ASAADAAGDAEGDEGAGPYWSLLLETTECSYRGV 363
            Q+   +SSMPL   LS +G+ +    L  +ST ++ IGVRG+ P     W Y+P+ + P+YR TVFS YA  + PAAD QLPTL     +SAAD++  + G    GPYWSL+ E +E S++ V
Sbjct:   86 QYDSLISSMPLDVTLSWLGKAEWAAGLQYSSTHIIGIGVRGSCPHGSKCWLYFPEDNCPYYRATVFSNYAAANCPAADAQLPTLCLADGSSAADSSSSSSG----GPYWSLMFEVSESSFKPV 204          
BLAST of mRNA_M-pyrifera_M_contig95073.21942.1 vs. uniprot
Match: D8TYN2_VOLCA (Amino_oxidase domain-containing protein n=12 Tax=Chlamydomonadales TaxID=3042 RepID=D8TYN2_VOLCA)

HSP 1 Score: 95.9 bits (237), Expect = 1.080e-20
Identity = 49/121 (40.50%), Postives = 70/121 (57.85%), Query Frame = 1
Query:    1 QFKHCVSSMPLPKALSMVGRHDLTDALTSTSTLVMLIGVRGTAPRVPVNWAYYPQSHLPFYRVTVFSRYAPGHVPAADVQLPTLFTVASAADAAGDAEGDEGAGPYWSLLLETTECSYRGV 363
            Q+   VS++PL   L+ +G+ +    L  +S+ ++ IG+RG  P     W Y+P+S+ PFYR TVFS YA  + PA D +LPTL       D +  A  D   GPYWSL+ E +E SY+ V
Sbjct:  257 QYDALVSTIPLDLTLTWLGKEEWAKGLQHSSSHIIGIGIRGECPHGTKCWLYFPESNCPFYRCTVFSNYAKLNCPADDAKLPTLCL----GDGSAPASSDPKEGPYWSLMFEVSESSYKPV 373          
BLAST of mRNA_M-pyrifera_M_contig95073.21942.1 vs. uniprot
Match: D8TYM3_VOLCA (GST N-terminal domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TYM3_VOLCA)

HSP 1 Score: 95.1 bits (235), Expect = 2.100e-20
Identity = 49/121 (40.50%), Postives = 69/121 (57.02%), Query Frame = 1
Query:    1 QFKHCVSSMPLPKALSMVGRHDLTDALTSTSTLVMLIGVRGTAPRVPVNWAYYPQSHLPFYRVTVFSRYAPGHVPAADVQLPTLFTVASAADAAGDAEGDEGAGPYWSLLLETTECSYRGV 363
            Q+   VS+ PL   L+ +G+ +    L  +S+ ++ IG+RG  P     W Y+P+S+ PFYR TVFS YA  + PA D +LPTL       D +  A  D   GPYWSL+ E +E SY+ V
Sbjct:   55 QYDALVSTTPLDLTLTWLGKEEWAKGLQHSSSHIIGIGIRGECPHGTKCWLYFPESNCPFYRCTVFSNYAKLNCPADDAKLPTLCL----GDGSAPASSDPKEGPYWSLMFEVSESSYKPV 171          
BLAST of mRNA_M-pyrifera_M_contig95073.21942.1 vs. uniprot
Match: A0A059LP92_9CHLO (Uncharacterized protein n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LP92_9CHLO)

HSP 1 Score: 91.3 bits (225), Expect = 4.080e-19
Identity = 48/121 (39.67%), Postives = 68/121 (56.20%), Query Frame = 1
Query:    1 QFKHCVSSMPLPKALSMVGRHDLTDALTSTSTLVMLIGVRGTAPRVPVNWAYYPQSHLPFYRVTVFSRYAPGHVPAADVQLPTLFTVASAADAAGDAEGDEGAGPYWSLLLETTECSYRGV 363
            Q+   VS++PL   L+ +G+ +    LT +ST V+ IG+RG+ P     W Y+P+   PFYR TVFS YA  + P    +LP L   +  A   G A+     GPYWSL+ E +E SY+ V
Sbjct:  203 QYGSLVSTIPLDHTLTWLGKAEWAQRLTHSSTHVVGIGIRGSCPHGLKCWLYFPEDDCPFYRTTVFSHYAEDNCPQRGARLPALCLASGEAPQDGSAKE----GPYWSLMFEISESSYKPV 319          
BLAST of mRNA_M-pyrifera_M_contig95073.21942.1 vs. uniprot
Match: A0A1E4TL93_9ASCO (Amino_oxidase domain-containing protein n=1 Tax=Tortispora caseinolytica NRRL Y-17796 TaxID=767744 RepID=A0A1E4TL93_9ASCO)

HSP 1 Score: 87.4 bits (215), Expect = 1.100e-17
Identity = 48/130 (36.92%), Postives = 77/130 (59.23%), Query Frame = 1
Query:    4 FKHCVSSMPLPKALSMVGRHD-----LTDA---LTSTSTLVMLIGVRGTAPRVPVN--WAYYPQSHLPFYRVTVFSRYAPGHVPAADVQLPTLFTVASAADAAGDAEGDEGAGPYWSLLLETTECSYRGV 363
            +K+ +++MPL   +  +   D     L DA   L  +ST V+ +G+RG+ P+   +  W Y+P+ + PFYR T+FS Y+P + P A  +LPTL+  + AA A+  A  +   GPYWSL+ E ++ SY+ V
Sbjct:  257 YKNLITTMPLDSLVRSLEIPDDEKAPLLDASEKLIYSSTHVIGVGIRGSRPQNIGDKCWLYFPEDNCPFYRATIFSNYSPYNQPQAGEKLPTLYVASDAAGASSTAPSEPKEGPYWSLMFEVSQSSYKPV 386          
BLAST of mRNA_M-pyrifera_M_contig95073.21942.1 vs. uniprot
Match: G2RHT7_THETT (Amino_oxidase domain-containing protein n=3 Tax=Sordariales TaxID=5139 RepID=G2RHT7_THETT)

HSP 1 Score: 82.0 bits (201), Expect = 8.920e-16
Identity = 45/125 (36.00%), Postives = 73/125 (58.40%), Query Frame = 1
Query:    4 FKHCVSSMPLPKALSMVGRHDLTD---ALTSTSTLVMLIGVRGTAP-RVPVN-WAYYPQSHLPFYRVTVFSRYAPGHVPAADVQLPTLFTVASAADAAGDAEGDEGAGPYWSLLLETTECSYRGV 363
            +   +++M +   +  +G  +L      L  +ST V+ IG+RG  P R+    W Y+P+ + PFYR T+FS Y+P + P ADV+LPTL+     AD +    G+   GPYWS++LE ++ S++ V
Sbjct:  260 YDKLINTMAVNHLVEKMGNQELVKLAKGLFYSSTHVIGIGIRGARPERIGDKCWLYFPEDNCPFYRATIFSNYSPYNQPQADVKLPTLYH----ADGSKAESGEPKEGPYWSIMLEVSQSSFKPV 380          
BLAST of mRNA_M-pyrifera_M_contig95073.21942.1 vs. uniprot
Match: A0A1Q5Q8G9_9EURO (Uncharacterized protein n=1 Tax=Talaromyces atroroseus TaxID=1441469 RepID=A0A1Q5Q8G9_9EURO)

HSP 1 Score: 81.6 bits (200), Expect = 1.280e-15
Identity = 47/125 (37.60%), Postives = 72/125 (57.60%), Query Frame = 1
Query:    4 FKHCVSSMPLPKALSMVGRHDLTD---ALTSTSTLVMLIGVRGTAP-RVPVN-WAYYPQSHLPFYRVTVFSRYAPGHVPAADVQLPTLFTVASAADAAGDAEGDEGAGPYWSLLLETTECSYRGV 363
            ++  VS+M +      +G  +L D    L  +ST V+ +G+RG  P R+    W Y+P+ + PFYR T+FS Y+P + P A  +LPTL      A+ +  A  +  AGPYWS++LE +E SY+ V
Sbjct:  419 YEKLVSTMAVDALAEQIGDEELIDHTKELFYSSTHVIGVGIRGERPERIGDKCWLYFPEDNCPFYRATIFSNYSPYNQPDASKKLPTL----QLANGSRPANSEPKAGPYWSIMLEVSESSYKPV 539          
BLAST of mRNA_M-pyrifera_M_contig95073.21942.1 vs. uniprot
Match: A0A4P9WQC3_9FUNG (Putative UDP-galactopyranose mutase n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WQC3_9FUNG)

HSP 1 Score: 81.3 bits (199), Expect = 1.680e-15
Identity = 52/127 (40.94%), Postives = 73/127 (57.48%), Query Frame = 1
Query:    4 FKHCVSSMPLPKALSMVG--RHDL---TDALTSTSTLVMLIGVRGTAP-RVPVN-WAYYPQSHLPFYRVTVFSRYAPGHVPAADVQLPTLFTVASAADAAGDAEGDEGAGPYWSLLLETTECSYRGV 363
            ++  +S+MP+     M+   R DL   +  L  ++T V+ IG+RG  P R+    W Y+P+   PFYR TVFS YA  +VP +D +LPTL   A+  +  G  +  E  GPYWSLLLE  E SY+ V
Sbjct:  259 YRSLLSTMPVDVLCKMLHPPRDDLVKLSQNLFFSTTHVIGIGIRGPRPARIGDKCWLYFPEDDAPFYRATVFSNYALANVPPSDAKLPTLRR-ANEKEGYGRLDSTEKEGPYWSLLLEVAESSYKPV 384          
BLAST of mRNA_M-pyrifera_M_contig95073.21942.1 vs. uniprot
Match: A0A0U1MAM2_TALIS (Amino_oxidase domain-containing protein n=3 Tax=Talaromyces TaxID=5094 RepID=A0A0U1MAM2_TALIS)

HSP 1 Score: 80.1 bits (196), Expect = 4.270e-15
Identity = 46/125 (36.80%), Postives = 71/125 (56.80%), Query Frame = 1
Query:    4 FKHCVSSMPLPKALSMVGRHDLTD---ALTSTSTLVMLIGVRGTAP-RVPVN-WAYYPQSHLPFYRVTVFSRYAPGHVPAADVQLPTLFTVASAADAAGDAEGDEGAGPYWSLLLETTECSYRGV 363
            ++  VS+M +   +  +G  DL +    L  ++T V+ +G+RG  P R+    W Y+P+ + PFYR T+FS Y+P + P A  +LPTL      AD +  A      GPYWS++LE +E SY+ V
Sbjct:  284 YEKLVSTMAVDGLIEQLGDKDLIEDSKGLFYSTTHVIGVGIRGERPERIGDKCWLYFPEDNCPFYRATIFSNYSPYNQPEASKELPTL----QLADGSKPASSGAKPGPYWSIMLEVSESSYKPV 404          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95073.21942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7J7PL49_9CHLO4.300e-2442.86Uncharacterized protein n=1 Tax=Scenedesmus sp. NR... [more]
A0A383WHX1_TETOB4.350e-2443.90Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
D8TYN2_VOLCA1.080e-2040.50Amino_oxidase domain-containing protein n=12 Tax=C... [more]
D8TYM3_VOLCA2.100e-2040.50GST N-terminal domain-containing protein n=1 Tax=V... [more]
A0A059LP92_9CHLO4.080e-1939.67Uncharacterized protein n=1 Tax=Helicosporidium sp... [more]
A0A1E4TL93_9ASCO1.100e-1736.92Amino_oxidase domain-containing protein n=1 Tax=To... [more]
G2RHT7_THETT8.920e-1636.00Amino_oxidase domain-containing protein n=3 Tax=So... [more]
A0A1Q5Q8G9_9EURO1.280e-1537.60Uncharacterized protein n=1 Tax=Talaromyces atroro... [more]
A0A4P9WQC3_9FUNG1.680e-1540.94Putative UDP-galactopyranose mutase n=1 Tax=Blytti... [more]
A0A0U1MAM2_TALIS4.270e-1536.80Amino_oxidase domain-containing protein n=3 Tax=Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95073contigM-pyrifera_M_contig95073:11..615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score91.3
Seed ortholog evalue3.2e-16
Seed eggNOG ortholog3067.XP_002951612.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Flavin containing amine oxidoreductase
EggNOG OGs2QQ27@2759,34J5P@3041,37WF2@33090,COG1232@1
COG Functional cat.H
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons4
Model size363
Cds size339
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95073.21942.1prot_M-pyrifera_M_contig95073.21942.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95073 35..615 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816865.62498-UTR-M-pyrifera_M_contig95073:10..341622816865.62498-UTR-M-pyrifera_M_contig95073:10..34Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig95073 11..34 +
1692278224.2220912-UTR-M-pyrifera_M_contig95073:10..341692278224.2220912-UTR-M-pyrifera_M_contig95073:10..34Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig95073 11..34 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816865.6358898-CDS-M-pyrifera_M_contig95073:34..1161622816865.6358898-CDS-M-pyrifera_M_contig95073:34..116Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95073 35..116 +
1692278224.2349193-CDS-M-pyrifera_M_contig95073:34..1161692278224.2349193-CDS-M-pyrifera_M_contig95073:34..116Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95073 35..116 +
1622816865.6466117-CDS-M-pyrifera_M_contig95073:183..2441622816865.6466117-CDS-M-pyrifera_M_contig95073:183..244Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95073 184..244 +
1692278224.2463188-CDS-M-pyrifera_M_contig95073:183..2441692278224.2463188-CDS-M-pyrifera_M_contig95073:183..244Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95073 184..244 +
1622816865.6581995-CDS-M-pyrifera_M_contig95073:311..4391622816865.6581995-CDS-M-pyrifera_M_contig95073:311..439Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95073 312..439 +
1692278224.26661-CDS-M-pyrifera_M_contig95073:311..4391692278224.26661-CDS-M-pyrifera_M_contig95073:311..439Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95073 312..439 +
1622816865.6735203-CDS-M-pyrifera_M_contig95073:547..6151622816865.6735203-CDS-M-pyrifera_M_contig95073:547..615Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95073 548..615 +
1692278224.275894-CDS-M-pyrifera_M_contig95073:547..6151692278224.275894-CDS-M-pyrifera_M_contig95073:547..615Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95073 548..615 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95073.21942.1

>prot_M-pyrifera_M_contig95073.21942.1 ID=prot_M-pyrifera_M_contig95073.21942.1|Name=mRNA_M-pyrifera_M_contig95073.21942.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
MPLPKALSMVGRHDLTDALTSTSTLVMLIGVRGTAPRVPVNWAYYPQSHL
PFYRVTVFSRYAPGHVPAADVQLPTLFTVASAADAAGDAEGDEGAGPYWS
LLLETTECSYRGV
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mRNA from alignment at M-pyrifera_M_contig95073:11..615+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95073.21942.1 ID=mRNA_M-pyrifera_M_contig95073.21942.1|Name=mRNA_M-pyrifera_M_contig95073.21942.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=605bp|location=Sequence derived from alignment at M-pyrifera_M_contig95073:11..615+ (Macrocystis pyrifera P11B4 male)
CAGTTCAAGCACTGCGTGTCGTCCATGCCGCTTCCGAAAGCCCTGAGCAT GGTGGGCCGACATGACCTGACCGACGCGCTGACTTCCACCTCCACGCTGG TCATGCGTGCGTGCGCGCGCTATGCTGGCGCGACGGAAGTGCCCTCACGC GACTGCTCTCGCGCCACGCGCAGTGATCGGGGTGCGAGGCACTGCGCCGC GTGTGCCTGTCAACTGGGCGTACTACCCGCAGAGGTACGTGTGCACCGCA CGCGCGCGCGCGGGGGTTGGAGCACGCTCTCACCCGTTCGCGAATCCGCA GCCACCTCCCGTTCTACAGGGTGACGGTGTTTTCCCGCTACGCACCTGGG CACGTGCCGGCAGCGGACGTGCAGCTGCCAACGCTGTTCACGGTGGCATC GGCAGCGGACGCGGCGGGAGACGCGGAAGGTGCTGGAGGGAGCGGCGGCG GTGGCGGGAGCGGCGGCGGCGGTGACGGCGAGAGTGGTGGCCCGGGGGGA GAGGAGGTGCTGGAGGAGACTGTGCACGGCGTGTCAGGCGACGAGGGCGC TGGGCCGTACTGGTCGCTGCTCCTGGAAACGACAGAGTGTTCGTACCGGG GCGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95073:11..615+

>mRNA_M-pyrifera_M_contig95073.21942.1 ID=mRNA_M-pyrifera_M_contig95073.21942.1|Name=mRNA_M-pyrifera_M_contig95073.21942.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig95073:11..615+ (Macrocystis pyrifera P11B4 male)
ATGCCGCTTCCGAAAGCCCTGAGCATGGTGGGCCGACATGACCTGACCGA
CGCGCTGACTTCCACCTCCACGCTGGTCATGCATGCCGCTTCCGAAAGCC
CTGAGCATGGTGGGCCGACATGACCTGACCGACGCGCTGACTTCCACCTC
CACGCTGGTCATGCTGATCGGGGTGCGAGGCACTGCGCCGCGTGTGCCTG
TCAACTGGGCGTACTACCCGCAGAGTGATCGGGGTGCGAGGCACTGCGCC
GCGTGTGCCTGTCAACTGGGCGTACTACCCGCAGAGCCACCTCCCGTTCT
ACAGGGTGACGGTGTTTTCCCGCTACGCACCTGGGCACGTGCCGGCAGCG
GACGTGCAGCTGCCAACGCTGTTCACGGTGGCATCGGCAGCGGACGCGGC
GGGAGACGCGGAAGCCACCTCCCGTTCTACAGGGTGACGGTGTTTTCCCG
CTACGCACCTGGGCACGTGCCGGCAGCGGACGTGCAGCTGCCAACGCTGT
TCACGGTGGCATCGGCAGCGGACGCGGCGGGAGACGCGGAAGGCGACGAG
GGCGCTGGGCCGTACTGGTCGCTGCTCCTGGAAACGACAGAGTGTTCGTA
CCGGGGCGTGGCGACGAGGGCGCTGGGCCGTACTGGTCGCTGCTCCTGGA
AACGACAGAGTGTTCGTACCGGGGCGTG
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