mRNA_M-pyrifera_M_contig95012.21927.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95012.21927.1
Unique NamemRNA_M-pyrifera_M_contig95012.21927.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig95012.21927.1 vs. uniprot
Match: A0A800MH99_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A800MH99_9BACT)

HSP 1 Score: 68.6 bits (166), Expect = 3.760e-10
Identity = 50/153 (32.68%), Postives = 76/153 (49.67%), Query Frame = 1 
Query:  118 AYRAFNGSNS--EASVLQLAAVLLGDGGVRSFLSKPWSGDALDVAMVECAILVESTPLGLAEFAVQGEEEKGAVDALLRDPLLMRTMLVAGGAASGPRGNRDPPKQFGRAIFLLQQIYNASSVLPHVPTAPPGGAWDDRNQSTMLRCLALGTA 570
            AYRA+  + +  E   L  A  +LGD  + +FL+       LD  ++  AI+   TP GLAEFA QGE+EK  +D L  + +LM+ +L+AGGA  G         ++G A+ +   I  AS               +   +  +L+ LALGT+
Sbjct:  103 AYRAYEAAKAVAEPKALDAARAILGD--IEAFLTN----SELDAKLMRAAIIRHGTPAGLAEFAQQGEQEKALLDQLFANDVLMKQILIAGGANGG---------EYGEAMQVYAAILEAS---------------EHAREPGILQRLALGTS 225
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BLAST of mRNA_M-pyrifera_M_contig95012.21927.1 vs. uniprot
Match: A0A349GXF0_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A349GXF0_9BACT)

HSP 1 Score: 68.6 bits (166), Expect = 3.830e-10
Identity = 41/88 (46.59%), Postives = 52/88 (59.09%), Query Frame = 1 
Query:  145 SEASVLQLAAVLLGDGGVRSFLSKPWSGDALDVAMVECAILVESTPLGLAEFAVQGEEEKGAVDALLRDPLLMRTMLVAGGAASGPRG 408
            +EA+ L+ A  +L D      L    S D LD  +V CA+LV +TP GLAEFA QG+ ++  V+ LL D  LMR ML AGGA  G  G
Sbjct:  178 AEANELKAAKAILAD------LGSILSSDTLDAKLVTCAVLVNATPKGLAEFAQQGKAQEELVEKLLADTALMRDMLDAGGANGGKYG 259
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95012.21927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A800MH99_9BACT3.760e-1032.68Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A349GXF0_9BACT3.830e-1046.59Uncharacterized protein n=1 Tax=Verrucomicrobia ba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95012contigM-pyrifera_M_contig95012:7..576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size570
Cds size570
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816864.5843618-CDS-M-pyrifera_M_contig95012:6..5761622816864.5843618-CDS-M-pyrifera_M_contig95012:6..576Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95012 7..576 -
1692278223.5617948-CDS-M-pyrifera_M_contig95012:6..5761692278223.5617948-CDS-M-pyrifera_M_contig95012:6..576Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95012 7..576 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95012.21927.1prot_M-pyrifera_M_contig95012.21927.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95012 7..576 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95012.21927.1

>prot_M-pyrifera_M_contig95012.21927.1 ID=prot_M-pyrifera_M_contig95012.21927.1|Name=mRNA_M-pyrifera_M_contig95012.21927.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=190bp
PTPVQKLEAYYSGMMNEYCALVRSSAPALPNGTANAFLAAYRAFNGSNSE
ASVLQLAAVLLGDGGVRSFLSKPWSGDALDVAMVECAILVESTPLGLAEF
AVQGEEEKGAVDALLRDPLLMRTMLVAGGAASGPRGNRDPPKQFGRAIFL
LQQIYNASSVLPHVPTAPPGGAWDDRNQSTMLRCLALGTA
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mRNA from alignment at M-pyrifera_M_contig95012:7..576-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95012.21927.1 ID=mRNA_M-pyrifera_M_contig95012.21927.1|Name=mRNA_M-pyrifera_M_contig95012.21927.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=570bp|location=Sequence derived from alignment at M-pyrifera_M_contig95012:7..576- (Macrocystis pyrifera P11B4 male)
CCTACTCCTGTGCAGAAGCTGGAGGCGTACTATAGTGGGATGATGAACGA
GTATTGTGCGTTGGTTCGATCTTCTGCGCCTGCACTGCCGAATGGGACGG
CAAATGCGTTTTTGGCTGCATATCGCGCGTTCAATGGGAGCAATAGCGAG
GCTTCTGTGTTGCAGTTGGCTGCAGTGCTGTTGGGAGATGGTGGGGTGCG
TTCGTTCCTGTCAAAGCCGTGGAGTGGAGACGCACTGGATGTTGCGATGG
TGGAGTGTGCCATTTTGGTGGAATCGACTCCTCTTGGATTGGCGGAATTT
GCGGTGCAAGGAGAGGAGGAGAAAGGTGCAGTGGATGCGCTGTTGCGAGA
TCCTCTGTTGATGCGAACGATGCTGGTGGCGGGAGGGGCGGCGAGTGGAC
CTCGAGGCAACAGAGATCCTCCAAAACAATTTGGGAGGGCGATTTTTTTG
CTGCAACAGATTTACAACGCAAGCTCCGTGCTTCCTCACGTCCCCACTGC
ACCTCCTGGCGGTGCTTGGGATGACCGGAACCAGAGCACGATGCTGCGTT
GCCTTGCGCTAGGCACTGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95012:7..576-

>mRNA_M-pyrifera_M_contig95012.21927.1 ID=mRNA_M-pyrifera_M_contig95012.21927.1|Name=mRNA_M-pyrifera_M_contig95012.21927.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1140bp|location=Sequence derived from alignment at M-pyrifera_M_contig95012:7..576- (Macrocystis pyrifera P11B4 male)
CCTACTCCTGTGCAGAAGCTGGAGGCGTACTATAGTGGGATGATGAACGA
GTATTGTGCGTTGGTTCGATCTTCTGCGCCTGCACTGCCGAATGGGACGG
CAAATGCGTTTTTGGCTGCATATCGCGCGTTCAATGGGAGCAATAGCGAG
GCTTCTGTGTTGCAGTTGGCTGCAGTGCTGTTGGGAGATGGTGGGGTGCG
TTCGTTCCTGTCAAAGCCGTGGAGTGGAGACGCACTGGATGTTGCGATGG
TGGAGTGTGCCATTTTGGTGGAATCGACTCCTCTTGGATTGGCGGAATTT
GCGGTGCAAGGAGAGGAGGAGAAAGGTGCAGTGGATGCGCTGTTGCGAGA
TCCTCTGTTGATGCGAACGATGCTGGTGGCGGGAGGGGCGGCGAGTGGAC
CTCGAGGCAACAGAGATCCTCCAAAACAATTTGGGAGGGCGATTTTTTTG
CTGCAACAGATTTACAACGCAAGCTCCGTGCTTCCTCACGTCCCCACTGC
ACCTCCTGGCGGTGCTTGGGATGACCGGAACCAGAGCACGATGCTGCGTT
GCCTTGCGCTAGGCACTGCCCCTACTCCTGTGCAGAAGCTGGAGGCGTAC
TATAGTGGGATGATGAACGAGTATTGTGCGTTGGTTCGATCTTCTGCGCC
TGCACTGCCGAATGGGACGGCAAATGCGTTTTTGGCTGCATATCGCGCGT
TCAATGGGAGCAATAGCGAGGCTTCTGTGTTGCAGTTGGCTGCAGTGCTG
TTGGGAGATGGTGGGGTGCGTTCGTTCCTGTCAAAGCCGTGGAGTGGAGA
CGCACTGGATGTTGCGATGGTGGAGTGTGCCATTTTGGTGGAATCGACTC
CTCTTGGATTGGCGGAATTTGCGGTGCAAGGAGAGGAGGAGAAAGGTGCA
GTGGATGCGCTGTTGCGAGATCCTCTGTTGATGCGAACGATGCTGGTGGC
GGGAGGGGCGGCGAGTGGACCTCGAGGCAACAGAGATCCTCCAAAACAAT
TTGGGAGGGCGATTTTTTTGCTGCAACAGATTTACAACGCAAGCTCCGTG
CTTCCTCACGTCCCCACTGCACCTCCTGGCGGTGCTTGGGATGACCGGAA
CCAGAGCACGATGCTGCGTTGCCTTGCGCTAGGCACTGCC
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