mRNA_M-pyrifera_M_contig94989.21917.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig94989.21917.1
Unique NamemRNA_M-pyrifera_M_contig94989.21917.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig94989.21917.1 vs. uniprot
Match: L8GPM7_ACACA (UPF0020 domain-containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GPM7_ACACA)

HSP 1 Score: 106 bits (264), Expect = 1.360e-24
Identity = 56/114 (49.12%), Postives = 72/114 (63.16%), Query Frame = 1 
Query:    4 VEEVLYDLLSFAAKMLVLNGRLAYWLPTTVDYQDCDVPQHPCLELFGNSEQVMAGRMRRRLITMVKVVEYDAQVHEGIDLDEYNREFYGVDVL-PEKGHTN---FASKMFLDDK 333
            V +VL DLL FAA+ LV+ GRL YWLPTT  Y+D DVP HPCL+L  NSEQV++ R+RRRLITM K++++D  +H  I +       YG D   P   H +      K F +DK
Sbjct:  332 VPDVLRDLLVFAAQTLVMGGRLVYWLPTTDQYKDSDVPLHPCLKLLANSEQVLSMRLRRRLITMEKIMDFDPSIHSDITVT------YGEDAEGPAHAHVSDYFLKRKQFAEDK 439
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BLAST of mRNA_M-pyrifera_M_contig94989.21917.1 vs. uniprot
Match: A0A2P6NVP0_9EUKA (tRNA guanosine-2'-O-methyltransferase 11 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NVP0_9EUKA)

HSP 1 Score: 101 bits (252), Expect = 1.150e-22
Identity = 47/86 (54.65%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:    1 AVEEVLYDLLSFAAKMLVLNGRLAYWLPTTVDYQDCDVPQHPCLELFGNSEQVMAGRMRRRLITMVKVVEYDAQVHEGIDLDEYNR 258
            AV +VL+DLL+ AA  LV+ GRL YWLPTT  Y+D D+P HPCL +  NSEQ +  R RRRLITM K  EY   VH+ +  +EY +
Sbjct:  534 AVSDVLHDLLNLAATRLVVGGRLVYWLPTTDQYKDSDLPLHPCLRIISNSEQPLTMRWRRRLITMEKFTEYIPSVHDNLSPEEYGQ 619
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BLAST of mRNA_M-pyrifera_M_contig94989.21917.1 vs. uniprot
Match: A0A2H6N513_MICLE (Uncharacterized protein n=1 Tax=Micrurus lemniscatus carvalhoi TaxID=129465 RepID=A0A2H6N513_MICLE)

HSP 1 Score: 86.7 bits (213), Expect = 4.060e-19
Identity = 45/107 (42.06%), Postives = 60/107 (56.07%), Query Frame = 1 
Query:    4 VEEVLYDLLSFAAKMLVLNGRLAYWLPT-TVDYQDCDVPQHPCLELFGNSEQVMAGRMRRRLITMVKVVEYDAQVHEGIDLDEYNREFYGVDVLPEKGHTNFASKMF 321
            + ++++DLL FAAK LVL GRL YWLP    +Y +  +PQHPCL+L  N EQ ++    R LITM KV E++         D+YN        L  K H +F  K F
Sbjct:   47 LSDIIFDLLKFAAKYLVLGGRLVYWLPVYKPEYTEEIIPQHPCLKLVSNCEQTLSNHTSRYLITMEKVKEFEE--------DDYNSHILDSQYLQYKCHDSFREKYF 145
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BLAST of mRNA_M-pyrifera_M_contig94989.21917.1 vs. uniprot
Match: UPI000644AAE1 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644AAE1)

HSP 1 Score: 90.9 bits (224), Expect = 5.950e-19
Identity = 39/84 (46.43%), Postives = 60/84 (71.43%), Query Frame = 1 
Query:    4 VEEVLYDLLSFAAKMLVLNGRLAYWLPTTVDYQDCDVPQHPCLELFGNSEQVMAGRMRRRLITMVKVVEYDAQVHEGIDLDEYN 255
            V +V+ DLL  AAKMLV+ G+L YWLPTT ++++ D+P+HPCL++  N  Q++  R  RRLITM KV+++D   H+   L +++
Sbjct:  324 VPDVMADLLELAAKMLVIGGKLVYWLPTTPEFKETDLPKHPCLKMISNCLQILTMRWGRRLITMEKVLDFDPIAHDKSKLTKFD 407
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BLAST of mRNA_M-pyrifera_M_contig94989.21917.1 vs. uniprot
Match: F4Q4W7_CAVFA (tRNA guanosine-2'-O-methyltransferase 11 n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4Q4W7_CAVFA)

HSP 1 Score: 90.1 bits (222), Expect = 1.330e-18
Identity = 41/84 (48.81%), Postives = 60/84 (71.43%), Query Frame = 1 
Query:    4 VEEVLYDLLSFAAKMLVLNGRLAYWLPTTVDYQDCDVPQHPCLELFGNSEQVMAGRMRRRLITMVKVVEYDAQVHEGIDLDEYN 255
            V +V+ DLL  AAK LV+NGRL YWLPTT ++++ D+P+HPCL L  N  QV++ +  RRLITM KV+++D   H   +L +++
Sbjct:  819 VPDVMADLLELAAKNLVMNGRLVYWLPTTPEFKESDLPKHPCLALVSNCLQVLSLKWGRRLITMKKVLDFDPIAHNKDNLTKFD 902
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BLAST of mRNA_M-pyrifera_M_contig94989.21917.1 vs. uniprot
Match: TRM11_DICDI (tRNA (guanine(10)-N2)-methyltransferase homolog n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=TRM11_DICDI)

HSP 1 Score: 88.2 bits (217), Expect = 5.520e-18
Identity = 39/77 (50.65%), Postives = 55/77 (71.43%), Query Frame = 1 
Query:    1 AVEEVLYDLLSFAAKMLVLNGRLAYWLPTTVDYQDCDVPQHPCLELFGNS-EQVMAGRMRRRLITMVKVVEYDAQVH 228
            +V +V+ DLL  AAK L++ GRL YWLPTT DY++ D+P+HPCL L   S  Q++  R  RRL+TM K++EY+  +H
Sbjct:  350 SVPDVMADLLELAAKTLIVGGRLVYWLPTTPDYKETDLPRHPCLRLITASCLQILTNRWGRRLVTMEKIIEYNDSIH 426
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BLAST of mRNA_M-pyrifera_M_contig94989.21917.1 vs. uniprot
Match: V8NV78_OPHHA (tRNA guanosine-2'-O-methyltransferase TRM11-like protein (Fragment) n=1 Tax=Ophiophagus hannah TaxID=8665 RepID=V8NV78_OPHHA)

HSP 1 Score: 86.7 bits (213), Expect = 1.400e-17
Identity = 45/107 (42.06%), Postives = 60/107 (56.07%), Query Frame = 1 
Query:    4 VEEVLYDLLSFAAKMLVLNGRLAYWLPT-TVDYQDCDVPQHPCLELFGNSEQVMAGRMRRRLITMVKVVEYDAQVHEGIDLDEYNREFYGVDVLPEKGHTNFASKMF 321
            + ++++DLL FAAK LVL GRL YWLP    +Y +  +PQHPCL+L  N EQ ++    R LITM KV E++         D+YN        L  K H +F  K F
Sbjct:  286 LSDIIFDLLKFAAKYLVLGGRLVYWLPVYKPEYTEEIIPQHPCLKLVSNCEQTLSNHTSRYLITMEKVKEFEE--------DDYNSHILDSQYLQYKCHDSFREKYF 384
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BLAST of mRNA_M-pyrifera_M_contig94989.21917.1 vs. uniprot
Match: A0A8J1XPS8_OWEFU (tRNA (guanine(10)-N2)-methyltransferase homolog n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1XPS8_OWEFU)

HSP 1 Score: 87.0 bits (214), Expect = 1.480e-17
Identity = 42/74 (56.76%), Postives = 51/74 (68.92%), Query Frame = 1 
Query:    4 VEEVLYDLLSFAAKMLVLNGRLAYWLPTT-VDYQDCDVPQHPCLELFGNSEQVMAGRMRRRLITMVKVVEYDAQ 222
            + ++  DLL+FAAK LVLNGRL YWLP    DY D +VPQHPC +L  N EQ M   + RRLITM KV++Y  Q
Sbjct:  371 LSDIYKDLLNFAAKYLVLNGRLVYWLPIIRTDYSDDNVPQHPCFKLQSNCEQAMTETIGRRLITMEKVIDYQEQ 444
[Close]
BLAST of mRNA_M-pyrifera_M_contig94989.21917.1 vs. uniprot
Match: A0A6I9Z5L3_9SAUR (tRNA (guanine(10)-N2)-methyltransferase homolog n=18 Tax=Colubroidea TaxID=34989 RepID=A0A6I9Z5L3_9SAUR)

HSP 1 Score: 86.7 bits (213), Expect = 1.760e-17
Identity = 45/107 (42.06%), Postives = 60/107 (56.07%), Query Frame = 1 
Query:    4 VEEVLYDLLSFAAKMLVLNGRLAYWLPT-TVDYQDCDVPQHPCLELFGNSEQVMAGRMRRRLITMVKVVEYDAQVHEGIDLDEYNREFYGVDVLPEKGHTNFASKMF 321
            + ++++DLL FAAK LVL GRL YWLP    +Y +  +PQHPCL+L  N EQ ++    R LITM KV E++         D+YN        L  K H +F  K F
Sbjct:  347 LSDIIFDLLKFAAKYLVLGGRLVYWLPVYKPEYTEEIIPQHPCLKLVSNCEQTLSNHTSRYLITMEKVKEFEE--------DDYNSHILDSQYLQYKCHDSFREKYF 445
[Close]
BLAST of mRNA_M-pyrifera_M_contig94989.21917.1 vs. uniprot
Match: A0A6I9Z721_9SAUR (tRNA (guanine(10)-N2)-methyltransferase homolog n=2 Tax=Thamnophis sirtalis TaxID=35019 RepID=A0A6I9Z721_9SAUR)

HSP 1 Score: 86.7 bits (213), Expect = 1.840e-17
Identity = 45/107 (42.06%), Postives = 60/107 (56.07%), Query Frame = 1 
Query:    4 VEEVLYDLLSFAAKMLVLNGRLAYWLPT-TVDYQDCDVPQHPCLELFGNSEQVMAGRMRRRLITMVKVVEYDAQVHEGIDLDEYNREFYGVDVLPEKGHTNFASKMF 321
            + ++++DLL FAAK LVL GRL YWLP    +Y +  +PQHPCL+L  N EQ ++    R LITM KV E++         D+YN        L  K H +F  K F
Sbjct:  365 LSDIIFDLLKFAAKYLVLGGRLVYWLPVYKPEYTEEIIPQHPCLKLVSNCEQTLSNHTSRYLITMEKVKEFEE--------DDYNSHILDSQYLQYKCHDSFREKYF 463
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig94989.21917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L8GPM7_ACACA1.360e-2449.12UPF0020 domain-containing protein n=1 Tax=Acantham... [more]
A0A2P6NVP0_9EUKA1.150e-2254.65tRNA guanosine-2'-O-methyltransferase 11 n=1 Tax=P... [more]
A0A2H6N513_MICLE4.060e-1942.06Uncharacterized protein n=1 Tax=Micrurus lemniscat... [more]
UPI000644AAE15.950e-1946.43hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
F4Q4W7_CAVFA1.330e-1848.81tRNA guanosine-2'-O-methyltransferase 11 n=1 Tax=C... [more]
TRM11_DICDI5.520e-1850.65tRNA (guanine(10)-N2)-methyltransferase homolog n=... [more]
V8NV78_OPHHA1.400e-1742.06tRNA guanosine-2'-O-methyltransferase TRM11-like p... [more]
A0A8J1XPS8_OWEFU1.480e-1756.76tRNA (guanine(10)-N2)-methyltransferase homolog n=... [more]
A0A6I9Z5L3_9SAUR1.760e-1742.06tRNA (guanine(10)-N2)-methyltransferase homolog n=... [more]
A0A6I9Z721_9SAUR1.840e-1742.06tRNA (guanine(10)-N2)-methyltransferase homolog n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig94989contigM-pyrifera_M_contig94989:378..734 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score91.7
Seed ortholog evalue2.6e-16
Seed eggNOG ortholog9258.ENSOANP00000003417
Preferred nameTRMT11
KEGG koko:K15430
Hectar predicted targeting categoryother localisation
GOsGO:0001510,GO:0003674,GO:0003824,GO:0004809,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360
EggNOG free text desc.tRNA binding
EggNOG OGs38G3V@33154,3B9MX@33208,3CYA2@33213,3J403@40674,4800P@7711,495RH@7742,COG1041@1,KOG2671@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-08_004210.2
EC2.1.1.214
COG Functional cat.L
Best tax levelMammalia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Exons1
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816864.0597954-CDS-M-pyrifera_M_contig94989:377..7341622816864.0597954-CDS-M-pyrifera_M_contig94989:377..734Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94989 378..734 -
1692278223.2407498-CDS-M-pyrifera_M_contig94989:377..7341692278223.2407498-CDS-M-pyrifera_M_contig94989:377..734Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94989 378..734 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig94989.21917.1prot_M-pyrifera_M_contig94989.21917.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig94989 378..734 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig94989.21917.1

>prot_M-pyrifera_M_contig94989.21917.1 ID=prot_M-pyrifera_M_contig94989.21917.1|Name=mRNA_M-pyrifera_M_contig94989.21917.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
AVEEVLYDLLSFAAKMLVLNGRLAYWLPTTVDYQDCDVPQHPCLELFGNS
EQVMAGRMRRRLITMVKVVEYDAQVHEGIDLDEYNREFYGVDVLPEKGHT
NFASKMFLDDKNRLDDREK
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mRNA from alignment at M-pyrifera_M_contig94989:378..734-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig94989.21917.1 ID=mRNA_M-pyrifera_M_contig94989.21917.1|Name=mRNA_M-pyrifera_M_contig94989.21917.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=357bp|location=Sequence derived from alignment at M-pyrifera_M_contig94989:378..734- (Macrocystis pyrifera P11B4 male)
GCAGTAGAGGAGGTGCTGTACGACTTGCTCTCATTTGCGGCGAAGATGCT
GGTGCTGAATGGCAGGCTGGCCTACTGGCTGCCGACGACGGTGGACTACC
AGGATTGCGACGTGCCCCAGCACCCGTGCCTGGAGCTGTTCGGCAACAGC
GAGCAGGTGATGGCAGGAAGAATGCGGAGGAGACTCATCACGATGGTGAA
GGTGGTGGAGTACGACGCGCAGGTGCACGAGGGAATCGACCTAGACGAGT
ACAACCGAGAGTTCTACGGCGTAGATGTCCTCCCCGAGAAGGGCCACACC
AACTTTGCCAGCAAGATGTTCCTCGACGACAAGAACCGCCTGGACGACAG
GGAGAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig94989:378..734-

>mRNA_M-pyrifera_M_contig94989.21917.1 ID=mRNA_M-pyrifera_M_contig94989.21917.1|Name=mRNA_M-pyrifera_M_contig94989.21917.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig94989:378..734- (Macrocystis pyrifera P11B4 male)
GCAGTAGAGGAGGTGCTGTACGACTTGCTCTCATTTGCGGCGAAGATGCT
GGTGCTGAATGGCAGGCTGGCCTACTGGCTGCCGACGACGGTGGACTACC
AGGATTGCGACGTGCCCCAGCACCCGTGCCTGGAGCTGTTCGGCAACAGC
GAGCAGGTGATGGCAGGAAGAATGCGGAGGAGACTCATCACGATGGTGAA
GGTGGTGGAGTACGACGCGCAGGTGCACGAGGGAATCGACCTAGACGAGT
ACAACCGAGAGTTCTACGGCGTAGATGTCCTCCCCGAGAAGGGCCACACC
AACTTTGCCAGCAAGATGTTCCTCGACGACAAGAACCGCCTGGACGACAG
GGAGAAGGCAGTAGAGGAGGTGCTGTACGACTTGCTCTCATTTGCGGCGA
AGATGCTGGTGCTGAATGGCAGGCTGGCCTACTGGCTGCCGACGACGGTG
GACTACCAGGATTGCGACGTGCCCCAGCACCCGTGCCTGGAGCTGTTCGG
CAACAGCGAGCAGGTGATGGCAGGAAGAATGCGGAGGAGACTCATCACGA
TGGTGAAGGTGGTGGAGTACGACGCGCAGGTGCACGAGGGAATCGACCTA
GACGAGTACAACCGAGAGTTCTACGGCGTAGATGTCCTCCCCGAGAAGGG
CCACACCAACTTTGCCAGCAAGATGTTCCTCGACGACAAGAACCGCCTGG
ACGACAGGGAGAAG
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