mRNA_M-pyrifera_M_contig94975.21911.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig94975.21911.1
Unique NamemRNA_M-pyrifera_M_contig94975.21911.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig94975.21911.1 vs. uniprot
Match: A0A7Y2N766_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2N766_9ACTN)

HSP 1 Score: 240 bits (613), Expect = 9.270e-73
Identity = 115/199 (57.79%), Postives = 147/199 (73.87%), Query Frame = 1 
Query:   13 RIDAANGFSVEVEPGEYTTGEDGVVTDVVRPDALRLLVDGAQSDVWPFGGPVEFQVVLDDFNGRYVLAHRRPSEPALPPAEHVVIDLFDGSVDSFVALPGTVALTVADTDGRPSYYTTGILPLCPTMSATVQLTAPSDLGGSAADAFDQAALAVSRCDESWLRLVSPTDPLDDDVWERMSASLRTVPTRGDSGWTFGEG 609
            RIDA NGF+VEV PGEY T  +G VT V+RPDA+RLL DG Q  +W FGGP E+ VVLDDF+GRYVLAHRRP EPALP + HVVID+ +G+ +S  A+PGTV+L   D   RPS  + G L LCPTMS+ ++LT PS+LG  A  +F++ ALA++RCDESW+R V   + + +  WE+++ASLRT P R + GW FGEG
Sbjct:  142 RIDAPNGFAVEVIPGEYETDGEGFVTRVIRPDAIRLLFDGEQHSIWQFGGPDEYVVVLDDFDGRYVLAHRRPEEPALPVSVHVVIDILEGTTESLAAIPGTVSLATPDIVDRPSVSSIGGLDLCPTMSSVIELTPPSELGVEATASFNETALAIARCDESWVRRVHIGEAMTEAFWEQLAASLRTAPRRLEDGWRFGEG 340
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig94975.21911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7Y2N766_9ACTN9.270e-7357.79Uncharacterized protein n=1 Tax=Acidimicrobiales b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig94975contigM-pyrifera_M_contig94975:4..621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size618
Cds size618
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816863.8198905-CDS-M-pyrifera_M_contig94975:3..6211622816863.8198905-CDS-M-pyrifera_M_contig94975:3..621Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94975 4..621 +
1692278223.123389-CDS-M-pyrifera_M_contig94975:3..6211692278223.123389-CDS-M-pyrifera_M_contig94975:3..621Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94975 4..621 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig94975.21911.1prot_M-pyrifera_M_contig94975.21911.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig94975 4..621 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig94975.21911.1

>prot_M-pyrifera_M_contig94975.21911.1 ID=prot_M-pyrifera_M_contig94975.21911.1|Name=mRNA_M-pyrifera_M_contig94975.21911.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=206bp
DERQRIDAANGFSVEVEPGEYTTGEDGVVTDVVRPDALRLLVDGAQSDVW
PFGGPVEFQVVLDDFNGRYVLAHRRPSEPALPPAEHVVIDLFDGSVDSFV
ALPGTVALTVADTDGRPSYYTTGILPLCPTMSATVQLTAPSDLGGSAADA
FDQAALAVSRCDESWLRLVSPTDPLDDDVWERMSASLRTVPTRGDSGWTF
GEGTAA
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mRNA from alignment at M-pyrifera_M_contig94975:4..621+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig94975.21911.1 ID=mRNA_M-pyrifera_M_contig94975.21911.1|Name=mRNA_M-pyrifera_M_contig94975.21911.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig94975:4..621+ (Macrocystis pyrifera P11B4 male)
GATGAGAGGCAACGAATCGATGCGGCGAACGGCTTCTCGGTCGAGGTCGA
ACCCGGCGAGTACACGACGGGAGAAGATGGCGTCGTCACCGACGTGGTGC
GCCCTGATGCGCTGCGGTTACTGGTCGACGGAGCACAGAGCGATGTGTGG
CCGTTCGGCGGGCCGGTCGAATTCCAGGTGGTCCTCGACGACTTCAATGG
CCGCTACGTGCTCGCTCATCGCCGCCCGAGCGAACCGGCCTTGCCACCGG
CCGAGCACGTGGTGATCGACCTCTTCGATGGAAGCGTCGACTCCTTCGTG
GCGCTTCCTGGAACGGTGGCGCTCACCGTCGCAGACACGGATGGACGTCC
GTCGTATTACACGACTGGGATTCTCCCGCTCTGCCCAACGATGTCTGCGA
CCGTTCAGCTGACTGCTCCGAGCGACCTCGGCGGCTCTGCCGCCGATGCC
TTCGATCAGGCAGCGCTTGCAGTAAGTCGCTGCGATGAGTCGTGGCTCCG
CCTGGTCTCGCCGACCGACCCCTTGGACGACGACGTGTGGGAACGGATGT
CGGCGTCGCTCCGCACGGTTCCGACTCGAGGCGACTCTGGTTGGACCTTT
GGTGAGGGGACCGCAGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig94975:4..621+

>mRNA_M-pyrifera_M_contig94975.21911.1 ID=mRNA_M-pyrifera_M_contig94975.21911.1|Name=mRNA_M-pyrifera_M_contig94975.21911.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1236bp|location=Sequence derived from alignment at M-pyrifera_M_contig94975:4..621+ (Macrocystis pyrifera P11B4 male)
GATGAGAGGCAACGAATCGATGCGGCGAACGGCTTCTCGGTCGAGGTCGA
ACCCGGCGAGTACACGACGGGAGAAGATGGCGTCGTCACCGACGTGGTGC
GCCCTGATGCGCTGCGGTTACTGGTCGACGGAGCACAGAGCGATGTGTGG
CCGTTCGGCGGGCCGGTCGAATTCCAGGTGGTCCTCGACGACTTCAATGG
CCGCTACGTGCTCGCTCATCGCCGCCCGAGCGAACCGGCCTTGCCACCGG
CCGAGCACGTGGTGATCGACCTCTTCGATGGAAGCGTCGACTCCTTCGTG
GCGCTTCCTGGAACGGTGGCGCTCACCGTCGCAGACACGGATGGACGTCC
GTCGTATTACACGACTGGGATTCTCCCGCTCTGCCCAACGATGTCTGCGA
CCGTTCAGCTGACTGCTCCGAGCGACCTCGGCGGCTCTGCCGCCGATGCC
TTCGATCAGGCAGCGCTTGCAGTAAGTCGCTGCGATGAGTCGTGGCTCCG
CCTGGTCTCGCCGACCGACCCCTTGGACGACGACGTGTGGGAACGGATGT
CGGCGTCGCTCCGCACGGTTCCGACTCGAGGCGACTCTGGTTGGACCTTT
GGTGAGGGGACCGCAGCGGATGAGAGGCAACGAATCGATGCGGCGAACGG
CTTCTCGGTCGAGGTCGAACCCGGCGAGTACACGACGGGAGAAGATGGCG
TCGTCACCGACGTGGTGCGCCCTGATGCGCTGCGGTTACTGGTCGACGGA
GCACAGAGCGATGTGTGGCCGTTCGGCGGGCCGGTCGAATTCCAGGTGGT
CCTCGACGACTTCAATGGCCGCTACGTGCTCGCTCATCGCCGCCCGAGCG
AACCGGCCTTGCCACCGGCCGAGCACGTGGTGATCGACCTCTTCGATGGA
AGCGTCGACTCCTTCGTGGCGCTTCCTGGAACGGTGGCGCTCACCGTCGC
AGACACGGATGGACGTCCGTCGTATTACACGACTGGGATTCTCCCGCTCT
GCCCAACGATGTCTGCGACCGTTCAGCTGACTGCTCCGAGCGACCTCGGC
GGCTCTGCCGCCGATGCCTTCGATCAGGCAGCGCTTGCAGTAAGTCGCTG
CGATGAGTCGTGGCTCCGCCTGGTCTCGCCGACCGACCCCTTGGACGACG
ACGTGTGGGAACGGATGTCGGCGTCGCTCCGCACGGTTCCGACTCGAGGC
GACTCTGGTTGGACCTTTGGTGAGGGGACCGCAGCG
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