mRNA_M-pyrifera_M_contig94974.21910.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig94974.21910.1
Unique NamemRNA_M-pyrifera_M_contig94974.21910.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig94974.21910.1 vs. uniprot
Match: A0A2J6LG92_LACSA (Uncharacterized protein n=3 Tax=Lactuca TaxID=4235 RepID=A0A2J6LG92_LACSA)

HSP 1 Score: 68.9 bits (167), Expect = 1.850e-10
Identity = 47/136 (34.56%), Postives = 75/136 (55.15%), Query Frame = 1
Query:  148 QAGAVIGKAGSEVASVQSASGARVRIGGDY---PGRSDRLVTLQGTP----AAIDFAKQQLSTRATLRVADEATGGVCTVVGVPNATVGAVIGKGGSVVSSICEATGARIQVMPDTEVRTGSDLREVYVYGTDEQM 534
            +AG++IGKAG+ ++  QS S AR+++  +Y   PG SDR++ + GT      A++    +L         DE        + VPN++ G +IGKGGS++ S  E +GA I++ P      G + R V V GT +Q+
Sbjct:   47 EAGSIIGKAGTTISDFQSRSNARIQLSRNYEYFPGTSDRVIMVSGTTDEVLEAVELILTKLLNEFYAEDGDEGEPRSKVRLIVPNSSCGGIIGKGGSMIRSFIEDSGANIKISPQDHNYIGLNDRLVTVIGTLQQL 182          
BLAST of mRNA_M-pyrifera_M_contig94974.21910.1 vs. uniprot
Match: A0A7S0CQF4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CQF4_9EUKA)

HSP 1 Score: 67.8 bits (164), Expect = 5.950e-10
Identity = 53/153 (34.64%), Postives = 81/153 (52.94%), Query Frame = 1
Query:  124 VHLLLPADQAGAVIGKAGSEVASVQSASGARVRIGGDYPGRSDRLVTLQGTPAAIDFAKQ--------QLSTRATLRVADE---ATGGVCTVVGVPNATVGAVIGKGGSVVSSICEATGARIQVMPDTEVRTGSDLREVYVYGTDEQMAAAAQ 549
            V +L+ A   G +IGK GS +   +S S A + I    PG S+R+VT++ TP  +    Q        Q+ T A    +D+   + G   T + +PN  +GAVIGKGG+V+  + E +GA I++  DT    GS  + + + GT  Q+  AAQ
Sbjct:  121 VRILINAKWMGGLIGKGGSVIKQYRSGSQAFINISNSVPGISERVVTVKSTPEKVMIGLQMVIHNLVTQMVTSAQYYPSDDEKDSKGPHITFL-IPNGAIGAVIGKGGTVIKQVRETSGASIKISDDT--LPGSTDKSLTLQGTSTQIWTAAQ 270          
BLAST of mRNA_M-pyrifera_M_contig94974.21910.1 vs. uniprot
Match: A0A2G2XV39_CAPAN (Protein BTR1 n=5 Tax=Capsicum TaxID=4071 RepID=A0A2G2XV39_CAPAN)

HSP 1 Score: 67.0 bits (162), Expect = 8.350e-10
Identity = 51/144 (35.42%), Postives = 78/144 (54.17%), Query Frame = 1
Query:  133 LLPADQAGAVIGKAGSEVASVQSASGARVRIGGD---YPGRSDRLVTLQG----TPAAIDFAKQQLSTRATLRVADEATGGVCTVVGVPNATVGAVIGKGGSVVSSICEATGARIQVMPDTEVRTGSDLREVYVYGT-DEQMAA 540
            LL   +AG++IGK GS ++  QS SGAR+++  +   +PG  DR+VT  G       A+D    +L   + +    +        + VPN++ G +IGKGG+V+ S  E +GA I+++P  +   G   R V V GT  EQM A
Sbjct:   44 LLSNAEAGSIIGKGGSTISGFQSRSGARIQLSRNNEFFPGTMDRIVTASGPIDDVLEAVDLILNKLLDESYVDNGGDVGPRSKVRLVVPNSSCGGIIGKGGAVIKSFIEDSGASIKILPQDDNFPGLHDRLVIVIGTLGEQMRA 187          
BLAST of mRNA_M-pyrifera_M_contig94974.21910.1 vs. uniprot
Match: A0A5N6LT80_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LT80_9ASTR)

HSP 1 Score: 66.6 bits (161), Expect = 1.160e-9
Identity = 45/136 (33.09%), Postives = 76/136 (55.88%), Query Frame = 1
Query:  148 QAGAVIGKAGSEVASVQSASGARVRIGGDY---PGRSDRLVTLQGTPAAIDFAKQQLSTRATLRV----ADEATGGVCTVVGVPNATVGAVIGKGGSVVSSICEATGARIQVMPDTEVRTGSDLREVYVYGTDEQM 534
            +AG++IGK G+ ++  QS S AR+++  ++   PG SDR++ + GT   +  A   + T+          +EA       + VPN++ G +IGKGGS++ S  E +GA I++ P      G + R V V+GT +Q+
Sbjct:   47 EAGSIIGKGGTTISDFQSRSNARIQLSRNFEYFPGTSDRVIMVSGTIEEVFEAVVLILTKLVNEFYAEDGEEAEQRSKVRLIVPNSSCGGIIGKGGSMIRSFIEESGASIKISPQDNTYVGLNDRLVTVFGTLQQL 182          
BLAST of mRNA_M-pyrifera_M_contig94974.21910.1 vs. uniprot
Match: A0A484KFG6_9ASTE (Uncharacterized protein n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A484KFG6_9ASTE)

HSP 1 Score: 66.2 bits (160), Expect = 1.600e-9
Identity = 52/147 (35.37%), Postives = 77/147 (52.38%), Query Frame = 1
Query:  124 VHLLLPADQAGAVIGKAGSEVASVQSASGARVRIGGD---YPGRSDRLVTLQGTP----AAIDFAKQQLSTRATLRVADEATGGVCTVVGVPNATVGAVIGKGGSVVSSICEATGARIQVMPDTEVRTGSDLREVYVYGT-DEQMAA 540
            V  LL   +AG++IGK G+ +   QS SGAR+++  +   +PG SDR+V + G       A+D    +L     +    EA       V VPN + G +IGKGGS++ +  E +GA I++ P      G   R V V GT +EQ+ A
Sbjct:   46 VKFLLSNPEAGSIIGKGGTTINDFQSRSGARIQLSRNHEFFPGTSDRIVMISGMVDEILKALDLILSKLLDEYIVDDGSEAEPRSKFRVVVPNGSCGGIIGKGGSIIKTFIEDSGAGIKISPQDSSLPGFHDRLVTVTGTLNEQLRA 192          
BLAST of mRNA_M-pyrifera_M_contig94974.21910.1 vs. uniprot
Match: A0A2G8L9H6_STIJA (Nova (Fragment) n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8L9H6_STIJA)

HSP 1 Score: 63.9 bits (154), Expect = 7.230e-9
Identity = 45/137 (32.85%), Postives = 72/137 (52.55%), Query Frame = 1
Query:  124 VHLLLPADQAGAVIGKAGSEVASVQSASGARVRIGGD---YPGRSDRLVTLQGTPAAIDFAKQ----------QLSTRATLRVADEATGGVCTVVGVPNATVGAVIGKGGSVVSSICEATGARIQVMPDTEVRTGSD 495
            V LL+P+  AG++IGK G  +A +Q  +G  +++      YPG S+R+  L GT  A++              QL  +A +             + VPN+T G +IGKGGS++ +I E +GAR+Q+   +E  T S+
Sbjct:    6 VKLLIPSTVAGSIIGKGGQTIAQLQRDTGTNIKLSKANDFYPGTSERVALLTGTVEALNNVASFIIEKVRESPQLGLKAGVENVTTPERARQVKLVVPNSTAGLIIGKGGSMIKTIMEQSGARVQISQKSEGVTLSE 142          
BLAST of mRNA_M-pyrifera_M_contig94974.21910.1 vs. uniprot
Match: A0A251U4K9_HELAN (Putative binding to TOMV RNA 1L (Long form) n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251U4K9_HELAN)

HSP 1 Score: 63.5 bits (153), Expect = 1.430e-8
Identity = 45/136 (33.09%), Postives = 73/136 (53.68%), Query Frame = 1
Query:  148 QAGAVIGKAGSEVASVQSASGARVRIGGDY---PGRSDRLVTLQGTPA----AIDFAKQQLSTRATLRVADEATGGVCTVVGVPNATVGAVIGKGGSVVSSICEATGARIQVMPDTEVRTGSDLREVYVYGTDEQM 534
            +AG+VIGK G+ ++  QS S AR+++  +Y   PG SDR++ + GT      A++    +L         +EA       + VPN++ G +IGKGGS++ S  E +GA I++        G + R V + GT  Q+
Sbjct:   47 EAGSVIGKGGTTISDFQSRSNARIQLSRNYEYFPGTSDRVIMVSGTVEEVLEAVELILTKLVNEFYAEDGEEAEPRSKVRLIVPNSSCGGLIGKGGSMIRSFIEESGANIKISAQDNTYIGLNDRLVTIIGTLPQL 182          
BLAST of mRNA_M-pyrifera_M_contig94974.21910.1 vs. uniprot
Match: UPI000900D8DB (protein BTR1 n=2 Tax=Ipomoea TaxID=4119 RepID=UPI000900D8DB)

HSP 1 Score: 62.0 bits (149), Expect = 4.730e-8
Identity = 47/140 (33.57%), Postives = 73/140 (52.14%), Query Frame = 1
Query:  124 VHLLLPADQAGAVIGKAGSEVASVQSASGARVRIGGD---YPGRSDRLVTLQGTP----AAIDFAKQQLSTRATLRVADEATGGVCTVVGVPNATVGAVIGKGGSVVSSICEATGARIQVMPDTEVRTGSDLREVYVYGT 522
            V  LL   +AG++IGK GS +   QS SGAR+++  +   +PG SDR+V + GT      A+D    +L     +    ++       + VPN + G +IGKGG+++ +  E +GA I++ P      G   R V V GT
Sbjct:   44 VKFLLSNPEAGSIIGKGGSTINDFQSRSGARIQLSRNHEFFPGTSDRIVMVSGTVDDILKALDLILAKLLDEFFVDDGGDSEPRSKFRLIVPNGSCGGIIGKGGAIIKTFIEDSGAGIKISPQDNNFPGFHDRLVTVAGT 183          
BLAST of mRNA_M-pyrifera_M_contig94974.21910.1 vs. uniprot
Match: UPI001C8FC280 (poly(rC)-binding protein 3-like isoform X6 n=4 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=UPI001C8FC280)

HSP 1 Score: 59.7 bits (143), Expect = 3.470e-7
Identity = 56/161 (34.78%), Postives = 81/161 (50.31%), Query Frame = 1
Query:   88 LEADGGELLGRCVHLLLPADQAGAVIGKAGSEVASVQSASGARVRIG-GDYPGRSDRLVTLQGTPAAIDFAKQQLSTRATLRVADE--------ATGGVCTVVG---VPNATVGAVIGKGGSVVSSICEATGARIQVMPDTEVRTGSDLREVYVYGTDEQM 534
            + +DGG      V LL+   + G++IGK G  V   +  SGA++ I  G  P   +R+VT+ GT  AI F   QL T+    V +          +GG  T+     VP +  G++IGKGGS +  I EAT A IQV   +E+   S  R V + GT + +
Sbjct:    8 MPSDGGPSATLTVRLLMQGKEVGSIIGKKGEIVKKFREESGAKINISDGSCP---ERIVTVMGTSEAI-FKGFQLITQKLEEVVERNQNEYGGGGSGGKTTITVRMIVPASQCGSLIGKGGSKIKEIREATSASIQVA--SEMLPNSTERAVTLSGTGDSV 162          
BLAST of mRNA_M-pyrifera_M_contig94974.21910.1 vs. uniprot
Match: UPI00083F200B (RNA-binding protein Nova-1 isoform X1 n=4 Tax=Drosophila busckii TaxID=30019 RepID=UPI00083F200B)

HSP 1 Score: 59.7 bits (143), Expect = 4.290e-7
Identity = 43/127 (33.86%), Postives = 70/127 (55.12%), Query Frame = 1
Query:  130 LLLPADQAGAVIGKAGSEVASVQSASGARVRIGGD---YPGRSDRLVTLQGTPAAI----DFAKQQLSTRATL---------RVADEATGGVCTVVGVPNATVGAVIGKGGSVVSSICEATGARIQV 462
            +L+PA  +GA+IGK G  +AS+Q  +GARV++      YPG ++R+  + G+P  I    DF   ++  +  L         + A E    V  +V  PN+T G +IGKGG+ +  I E +G+ +Q+
Sbjct:  250 ILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSPDGIMNVVDFIMDKIREKPDLATKIIDTESKQAQERDKQVKILV--PNSTAGMIIGKGGAFIKQIKEESGSYVQI 374          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig94974.21910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2J6LG92_LACSA1.850e-1034.56Uncharacterized protein n=3 Tax=Lactuca TaxID=4235... [more]
A0A7S0CQF4_9EUKA5.950e-1034.64Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A2G2XV39_CAPAN8.350e-1035.42Protein BTR1 n=5 Tax=Capsicum TaxID=4071 RepID=A0A... [more]
A0A5N6LT80_9ASTR1.160e-933.09Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A484KFG6_9ASTE1.600e-935.37Uncharacterized protein n=3 Tax=Cuscuta sect. Clei... [more]
A0A2G8L9H6_STIJA7.230e-932.85Nova (Fragment) n=1 Tax=Stichopus japonicus TaxID=... [more]
A0A251U4K9_HELAN1.430e-833.09Putative binding to TOMV RNA 1L (Long form) n=1 Ta... [more]
UPI000900D8DB4.730e-833.57protein BTR1 n=2 Tax=Ipomoea TaxID=4119 RepID=UPI0... [more]
UPI001C8FC2803.470e-734.78poly(rC)-binding protein 3-like isoform X6 n=4 Tax... [more]
UPI00083F200B4.290e-733.86RNA-binding protein Nova-1 isoform X1 n=4 Tax=Dros... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig94974contigM-pyrifera_M_contig94974:57..626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score72.0
Seed ortholog evalue3.3e-10
Seed eggNOG ortholog4641.GSMUA_Achr1P24360_001
KEGG koko:K14944
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009719,GO:0009725,GO:0009735,GO:0009987,GO:0010033,GO:0010467,GO:0016070,GO:0034641,GO:0042221,GO:0042592,GO:0043170,GO:0043900,GO:0043903,GO:0044237,GO:0044238,GO:0046483,GO:0046719,GO:0048878,GO:0050789,GO:0050792,GO:0050896,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363
EggNOG free text desc.RNA-binding protein Nova-1
EggNOG OGs37RN7@33090,3G7IQ@35493,3KN0F@4447,KOG2191@1,KOG2191@2759
COG Functional cat.A
Best tax levelLiliopsida
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Exons1
Model size570
Cds size570
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816863.7875285-CDS-M-pyrifera_M_contig94974:56..6261622816863.7875285-CDS-M-pyrifera_M_contig94974:56..626Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94974 57..626 +
1692278223.1065183-CDS-M-pyrifera_M_contig94974:56..6261692278223.1065183-CDS-M-pyrifera_M_contig94974:56..626Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94974 57..626 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig94974.21910.1prot_M-pyrifera_M_contig94974.21910.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig94974 57..626 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig94974.21910.1

>prot_M-pyrifera_M_contig94974.21910.1 ID=prot_M-pyrifera_M_contig94974.21910.1|Name=mRNA_M-pyrifera_M_contig94974.21910.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=190bp
CRDRVVTVEGTASGVAAAEAELVKRCEENLEADGGELLGRCVHLLLPADQ
AGAVIGKAGSEVASVQSASGARVRIGGDYPGRSDRLVTLQGTPAAIDFAK
QQLSTRATLRVADEATGGVCTVVGVPNATVGAVIGKGGSVVSSICEATGA
RIQVMPDTEVRTGSDLREVYVYGTDEQMAAAAQDVAARVE
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mRNA from alignment at M-pyrifera_M_contig94974:57..626+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig94974.21910.1 ID=mRNA_M-pyrifera_M_contig94974.21910.1|Name=mRNA_M-pyrifera_M_contig94974.21910.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=570bp|location=Sequence derived from alignment at M-pyrifera_M_contig94974:57..626+ (Macrocystis pyrifera P11B4 male)
TGCAGGGACCGGGTGGTGACGGTGGAAGGCACGGCGAGCGGCGTGGCGGC CGCCGAGGCCGAGCTGGTGAAGCGGTGCGAAGAAAACTTGGAGGCGGACG GCGGCGAGCTGCTCGGCCGCTGCGTCCACCTGCTGCTGCCTGCGGACCAG GCGGGCGCGGTGATCGGCAAGGCCGGCTCGGAGGTGGCGTCGGTGCAGAG CGCGTCCGGCGCGCGTGTGCGCATCGGCGGCGACTACCCCGGCCGCAGCG ACCGCTTGGTGACGCTGCAGGGCACGCCCGCGGCGATTGACTTTGCGAAG CAGCAGCTGTCGACGAGGGCGACGCTGCGGGTGGCGGACGAGGCGACGGG CGGGGTGTGCACGGTGGTGGGCGTGCCCAACGCCACCGTCGGCGCCGTCA TCGGCAAGGGCGGCAGCGTGGTGTCTTCCATCTGCGAGGCCACTGGCGCG CGCATCCAGGTGATGCCGGACACGGAGGTGCGCACGGGCAGCGACCTGCG CGAGGTGTACGTGTACGGCACGGACGAGCAGATGGCGGCGGCGGCGCAGG ATGTGGCCGCGCGCGTGGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig94974:57..626+

>mRNA_M-pyrifera_M_contig94974.21910.1 ID=mRNA_M-pyrifera_M_contig94974.21910.1|Name=mRNA_M-pyrifera_M_contig94974.21910.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1140bp|location=Sequence derived from alignment at M-pyrifera_M_contig94974:57..626+ (Macrocystis pyrifera P11B4 male)
TGCAGGGACCGGGTGGTGACGGTGGAAGGCACGGCGAGCGGCGTGGCGGC
CGCCGAGGCCGAGCTGGTGAAGCGGTGCGAAGAAAACTTGGAGGCGGACG
GCGGCGAGCTGCTCGGCCGCTGCGTCCACCTGCTGCTGCCTGCGGACCAG
GCGGGCGCGGTGATCGGCAAGGCCGGCTCGGAGGTGGCGTCGGTGCAGAG
CGCGTCCGGCGCGCGTGTGCGCATCGGCGGCGACTACCCCGGCCGCAGCG
ACCGCTTGGTGACGCTGCAGGGCACGCCCGCGGCGATTGACTTTGCGAAG
CAGCAGCTGTCGACGAGGGCGACGCTGCGGGTGGCGGACGAGGCGACGGG
CGGGGTGTGCACGGTGGTGGGCGTGCCCAACGCCACCGTCGGCGCCGTCA
TCGGCAAGGGCGGCAGCGTGGTGTCTTCCATCTGCGAGGCCACTGGCGCG
CGCATCCAGGTGATGCCGGACACGGAGGTGCGCACGGGCAGCGACCTGCG
CGAGGTGTACGTGTACGGCACGGACGAGCAGATGGCGGCGGCGGCGCAGG
ATGTGGCCGCGCGCGTGGAGTGCAGGGACCGGGTGGTGACGGTGGAAGGC
ACGGCGAGCGGCGTGGCGGCCGCCGAGGCCGAGCTGGTGAAGCGGTGCGA
AGAAAACTTGGAGGCGGACGGCGGCGAGCTGCTCGGCCGCTGCGTCCACC
TGCTGCTGCCTGCGGACCAGGCGGGCGCGGTGATCGGCAAGGCCGGCTCG
GAGGTGGCGTCGGTGCAGAGCGCGTCCGGCGCGCGTGTGCGCATCGGCGG
CGACTACCCCGGCCGCAGCGACCGCTTGGTGACGCTGCAGGGCACGCCCG
CGGCGATTGACTTTGCGAAGCAGCAGCTGTCGACGAGGGCGACGCTGCGG
GTGGCGGACGAGGCGACGGGCGGGGTGTGCACGGTGGTGGGCGTGCCCAA
CGCCACCGTCGGCGCCGTCATCGGCAAGGGCGGCAGCGTGGTGTCTTCCA
TCTGCGAGGCCACTGGCGCGCGCATCCAGGTGATGCCGGACACGGAGGTG
CGCACGGGCAGCGACCTGCGCGAGGTGTACGTGTACGGCACGGACGAGCA
GATGGCGGCGGCGGCGCAGGATGTGGCCGCGCGCGTGGAG
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