mRNA_M-pyrifera_M_contig94917.21895.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig94917.21895.1
Unique NamemRNA_M-pyrifera_M_contig94917.21895.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig94917.21895.1 vs. uniprot
Match: A0A517W7U0_9PLAN (Putative methyltransferase YcgJ n=6 Tax=Gimesia TaxID=1649453 RepID=A0A517W7U0_9PLAN)

HSP 1 Score: 238 bits (606), Expect = 3.340e-77
Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 1 
Query:    1 LLKKKLDKMGVDNVVPVLGTQKSPGLKPESIDLAIMVDVYHEFEFPYEMMLEISKALKPKGRVVLVEYRKEDPTVPIKLVHKMSEAQAKKEVSRPELNLKWKETIGLLPRQHILVFEKTADE 366
            LLKKKLDKMGVDNVVPVLGTQKSPGLKPESIDLAIMVDVYHEFEFPYEMMLEISKALKPKGRVVLVEYRKEDPTVPIKLVHKMSEAQAKKEVSRPELNLKWKETIGLLPRQHILVFEKT DE
Sbjct:  146 LLKKKLDKMGVDNVVPVLGTQKSPGLKPESIDLAIMVDVYHEFEFPYEMMLEISKALKPKGRVVLVEYRKEDPTVPIKLVHKMSEAQAKKEVSRPELNLKWKETIGLLPRQHILVFEKTTDE 267
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BLAST of mRNA_M-pyrifera_M_contig94917.21895.1 vs. uniprot
Match: A0A517Q2E3_9PLAN (Putative methyltransferase YcgJ n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517Q2E3_9PLAN)

HSP 1 Score: 224 bits (572), Expect = 5.510e-72
Identity = 110/122 (90.16%), Postives = 119/122 (97.54%), Query Frame = 1 
Query:    1 LLKKKLDKMGVDNVVPVLGTQKSPGLKPESIDLAIMVDVYHEFEFPYEMMLEISKALKPKGRVVLVEYRKEDPTVPIKLVHKMSEAQAKKEVSRPELNLKWKETIGLLPRQHILVFEKTADE 366
            LLKKK++K G+DNV+PVLGTQKSPGLKPESID+AIMVDVYHEFEFPYEMM EISKALKPKGRVVLVEYRKEDP+VPIKLVHKM+EAQAKKEVSRPELNLKWKETIG+LPRQHILVFEKT +E
Sbjct:  150 LLKKKMEKQGIDNVIPVLGTQKSPGLKPESIDMAIMVDVYHEFEFPYEMMQEISKALKPKGRVVLVEYRKEDPSVPIKLVHKMTEAQAKKEVSRPELNLKWKETIGILPRQHILVFEKTTEE 271
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BLAST of mRNA_M-pyrifera_M_contig94917.21895.1 vs. uniprot
Match: A0A517X722_9PLAN (Putative methyltransferase YcgJ n=7 Tax=Planctomycetaceae TaxID=126 RepID=A0A517X722_9PLAN)

HSP 1 Score: 223 bits (569), Expect = 1.340e-71
Identity = 112/122 (91.80%), Postives = 117/122 (95.90%), Query Frame = 1 
Query:    1 LLKKKLDKMGVDNVVPVLGTQKSPGLKPESIDLAIMVDVYHEFEFPYEMMLEISKALKPKGRVVLVEYRKEDPTVPIKLVHKMSEAQAKKEVSRPELNLKWKETIGLLPRQHILVFEKTADE 366
            LL KK+ K GVDN+VPVLGTQKSPGLKPESIDLAIMVDVYHEFEFPYEMM EISKALKPKGRVVLVEYRKEDP VPIKLVHKMSEAQAKKEV+RPELNLKWKETIG+LPRQHILVFEKTA+E
Sbjct:  145 LLDKKMKKQGVDNIVPVLGTQKSPGLKPESIDLAIMVDVYHEFEFPYEMMQEISKALKPKGRVVLVEYRKEDPAVPIKLVHKMSEAQAKKEVARPELNLKWKETIGILPRQHILVFEKTAEE 266
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BLAST of mRNA_M-pyrifera_M_contig94917.21895.1 vs. uniprot
Match: A0A517RAV7_9PLAN (Putative methyltransferase YcgJ n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RAV7_9PLAN)

HSP 1 Score: 223 bits (569), Expect = 1.430e-71
Identity = 113/122 (92.62%), Postives = 117/122 (95.90%), Query Frame = 1 
Query:    1 LLKKKLDKMGVDNVVPVLGTQKSPGLKPESIDLAIMVDVYHEFEFPYEMMLEISKALKPKGRVVLVEYRKEDPTVPIKLVHKMSEAQAKKEVSRPELNLKWKETIGLLPRQHILVFEKTADE 366
            LL KKL K+GVDN+ PVLGTQKSPGLKPESIDLAIMVDVYHEFEFPYEMMLEISKALKPKGRVVLVEYRKEDP VPIKLVHKMSEAQAKKEVSRPELNLKWKETIG+LPRQHILVFEKT +E
Sbjct:  147 LLAKKLKKVGVDNIHPVLGTQKSPGLKPESIDLAIMVDVYHEFEFPYEMMLEISKALKPKGRVVLVEYRKEDPAVPIKLVHKMSEAQAKKEVSRPELNLKWKETIGVLPRQHILVFEKTTEE 268
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BLAST of mRNA_M-pyrifera_M_contig94917.21895.1 vs. uniprot
Match: A0A518I7S0_9PLAN (Putative methyltransferase YcgJ n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518I7S0_9PLAN)

HSP 1 Score: 221 bits (563), Expect = 1.160e-70
Identity = 111/122 (90.98%), Postives = 116/122 (95.08%), Query Frame = 1 
Query:    1 LLKKKLDKMGVDNVVPVLGTQKSPGLKPESIDLAIMVDVYHEFEFPYEMMLEISKALKPKGRVVLVEYRKEDPTVPIKLVHKMSEAQAKKEVSRPELNLKWKETIGLLPRQHILVFEKTADE 366
            LL KKL K+GV+N+ PVLGTQKSPGLKPESIDL IMVDVYHEFEFPYEMMLEISKALKPKGRV LVEYRKEDPTVPIKLVHKMSEAQAKKEVSRPELNLKWKETIG+LPRQHILVFEKT +E
Sbjct:  147 LLAKKLQKVGVENIHPVLGTQKSPGLKPESIDLVIMVDVYHEFEFPYEMMLEISKALKPKGRVALVEYRKEDPTVPIKLVHKMSEAQAKKEVSRPELNLKWKETIGVLPRQHILVFEKTVEE 268
[Close]
BLAST of mRNA_M-pyrifera_M_contig94917.21895.1 vs. uniprot
Match: A0A517X2T8_9PLAN (Putative methyltransferase YcgJ n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517X2T8_9PLAN)

HSP 1 Score: 216 bits (551), Expect = 7.470e-69
Identity = 108/120 (90.00%), Postives = 115/120 (95.83%), Query Frame = 1 
Query:    1 LLKKKLDKMGVDNVVPVLGTQKSPGLKPESIDLAIMVDVYHEFEFPYEMMLEISKALKPKGRVVLVEYRKEDPTVPIKLVHKMSEAQAKKEVSRPELNLKWKETIGLLPRQHILVFEKTA 360
            LL KKL+K GV N+ PVLGTQKSPGLKPESID+AIMVDVYHEFEFP+EMM EISKALKPKGRVVLVEYRKEDPTVPIKLVHKMSEAQAKKEVSRPELNLKWKETIG+LPRQHIL+FEKT+
Sbjct:  146 LLNKKLEKQGVKNIHPVLGTQKSPGLKPESIDVAIMVDVYHEFEFPFEMMQEISKALKPKGRVVLVEYRKEDPTVPIKLVHKMSEAQAKKEVSRPELNLKWKETIGILPRQHILIFEKTS 265
[Close]
BLAST of mRNA_M-pyrifera_M_contig94917.21895.1 vs. uniprot
Match: A0A355GD85_9PLAN (Methyltransferase type 11 n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A355GD85_9PLAN)

HSP 1 Score: 214 bits (546), Expect = 4.160e-68
Identity = 107/122 (87.70%), Postives = 116/122 (95.08%), Query Frame = 1 
Query:    1 LLKKKLDKMGVDNVVPVLGTQKSPGLKPESIDLAIMVDVYHEFEFPYEMMLEISKALKPKGRVVLVEYRKEDPTVPIKLVHKMSEAQAKKEVSRPELNLKWKETIGLLPRQHILVFEKTADE 366
            LL +K+ K GV+N+ PVLGTQKSPGLKPESIDLAIMVDVYHEFEFPYEMM EISKALKP+GRVVLVEYRKEDP VPIKLVHKMSEAQAKKEV+RPELNLKWKETIG+LPRQHILVFEKTA++
Sbjct:  145 LLDQKMKKQGVENIHPVLGTQKSPGLKPESIDLAIMVDVYHEFEFPYEMMREISKALKPQGRVVLVEYRKEDPAVPIKLVHKMSEAQAKKEVARPELNLKWKETIGILPRQHILVFEKTAEK 266
[Close]
BLAST of mRNA_M-pyrifera_M_contig94917.21895.1 vs. uniprot
Match: A0A1P8WIB7_9PLAN (Putative methyltransferase YcgJ n=1 Tax=Fuerstiella marisgermanici TaxID=1891926 RepID=A0A1P8WIB7_9PLAN)

HSP 1 Score: 170 bits (431), Expect = 7.420e-51
Identity = 84/119 (70.59%), Postives = 99/119 (83.19%), Query Frame = 1 
Query:    4 LKKKLDKMGVDNVVPVLGTQKSPGLKPESIDLAIMVDVYHEFEFPYEMMLEISKALKPKGRVVLVEYRKEDPTVPIKLVHKMSEAQAKKEVSRPELNLKWKETIGLLPRQHILVFEKTA 360
            L++ + K GV NVVP+ G+Q+S  L P+SIDLAIMVDVYHEFEFPYEMM +IS+A++P GRVVLVEYR EDPTVPIKLVHKMS+ QAK EV + E N+KW ETI +LPRQHILVF K A
Sbjct:  131 LQENMKKKGVSNVVPIKGSQQSSSLAPQSIDLAIMVDVYHEFEFPYEMMADISRAIRPGGRVVLVEYRMEDPTVPIKLVHKMSQKQAKAEVEQAEFNMKWTETIDVLPRQHILVFTKAA 249
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BLAST of mRNA_M-pyrifera_M_contig94917.21895.1 vs. uniprot
Match: A0A3B9CXP9_9PLAN (Methyltransferase type 11 n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3B9CXP9_9PLAN)

HSP 1 Score: 169 bits (429), Expect = 1.580e-50
Identity = 83/115 (72.17%), Postives = 93/115 (80.87%), Query Frame = 1 
Query:   22 KMGVDNVVPVLGTQKSPGLKPESIDLAIMVDVYHEFEFPYEMMLEISKALKPKGRVVLVEYRKEDPTVPIKLVHKMSEAQAKKEVSRPELNLKWKETIGLLPRQHILVFEKTADE 366
            K G+ N+VP+ G QKSP L P S+DLAIMVDVYHEFEFPYEMM +ISKA+KP GRVVLVEYR EDPTVPIKLVHKM+E QAK EV + E  LKW ETI +LP QHI+VF K A E
Sbjct:  138 KKGITNIVPIKGNQKSPSLAPASVDLAIMVDVYHEFEFPYEMMAQISKAIKPGGRVVLVEYRMEDPTVPIKLVHKMTEKQAKLEVEQKEFGLKWTETIAVLPAQHIIVFTKQASE 252
[Close]
BLAST of mRNA_M-pyrifera_M_contig94917.21895.1 vs. uniprot
Match: A0A2E8FI50_9PLAN (Methyltransferase type 11 n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E8FI50_9PLAN)

HSP 1 Score: 167 bits (422), Expect = 2.390e-49
Identity = 81/119 (68.07%), Postives = 98/119 (82.35%), Query Frame = 1 
Query:    4 LKKKLDKMGVDNVVPVLGTQKSPGLKPESIDLAIMVDVYHEFEFPYEMMLEISKALKPKGRVVLVEYRKEDPTVPIKLVHKMSEAQAKKEVSRPELNLKWKETIGLLPRQHILVFEKTA 360
            LK ++ + GV NV+PVL  QK+P LKP S+DL IMVDVYHEFEFP+EM LE+SKALKP GR   VEYR EDP VPIKL+HKM+EAQ KKE+S+ E  LK+KETI +LPRQHI++FEK+A
Sbjct:  137 LKLRMKRFGVKNVMPVLSNQKTPKLKPASVDLVIMVDVYHEFEFPFEMTLELSKALKPGGRAAFVEYRMEDPRVPIKLIHKMTEAQVKKEISQAEFGLKFKETIRVLPRQHIVIFEKSA 255
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig94917.21895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A517W7U0_9PLAN3.340e-7799.18Putative methyltransferase YcgJ n=6 Tax=Gimesia Ta... [more]
A0A517Q2E3_9PLAN5.510e-7290.16Putative methyltransferase YcgJ n=3 Tax=Gimesia pa... [more]
A0A517X722_9PLAN1.340e-7191.80Putative methyltransferase YcgJ n=7 Tax=Planctomyc... [more]
A0A517RAV7_9PLAN1.430e-7192.62Putative methyltransferase YcgJ n=1 Tax=Gimesia al... [more]
A0A518I7S0_9PLAN1.160e-7090.98Putative methyltransferase YcgJ n=1 Tax=Gimesia fu... [more]
A0A517X2T8_9PLAN7.470e-6990.00Putative methyltransferase YcgJ n=2 Tax=Gimesia aq... [more]
A0A355GD85_9PLAN4.160e-6887.70Methyltransferase type 11 n=2 Tax=Planctomycetacea... [more]
A0A1P8WIB7_9PLAN7.420e-5170.59Putative methyltransferase YcgJ n=1 Tax=Fuerstiell... [more]
A0A3B9CXP9_9PLAN1.580e-5072.17Methyltransferase type 11 n=1 Tax=Planctomycetacea... [more]
A0A2E8FI50_9PLAN2.390e-4968.07Methyltransferase type 11 n=1 Tax=Planctomycetacea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig94917contigM-pyrifera_M_contig94917:3..371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score214.9
Seed ortholog evalue1.9e-53
Seed eggNOG ortholog344747.PM8797T_18619
Preferred nameermC
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
EggNOG OGs2IZB5@203682,COG0500@1,COG2226@2
COG Functional cat.Q
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size369
Cds size345
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816862.9764287-UTR-M-pyrifera_M_contig94917:2..261622816862.9764287-UTR-M-pyrifera_M_contig94917:2..26Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig94917 3..26 +
1692278222.6513953-UTR-M-pyrifera_M_contig94917:2..261692278222.6513953-UTR-M-pyrifera_M_contig94917:2..26Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig94917 3..26 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816862.9888105-CDS-M-pyrifera_M_contig94917:26..3711622816862.9888105-CDS-M-pyrifera_M_contig94917:26..371Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94917 27..371 +
1692278222.6643376-CDS-M-pyrifera_M_contig94917:26..3711692278222.6643376-CDS-M-pyrifera_M_contig94917:26..371Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94917 27..371 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig94917.21895.1prot_M-pyrifera_M_contig94917.21895.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig94917 27..371 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig94917.21895.1

>prot_M-pyrifera_M_contig94917.21895.1 ID=prot_M-pyrifera_M_contig94917.21895.1|Name=mRNA_M-pyrifera_M_contig94917.21895.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp
MGVDNVVPVLGTQKSPGLKPESIDLAIMVDVYHEFEFPYEMMLEISKALK
PKGRVVLVEYRKEDPTVPIKLVHKMSEAQAKKEVSRPELNLKWKETIGLL
PRQHILVFEKTADE*
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mRNA from alignment at M-pyrifera_M_contig94917:3..371+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig94917.21895.1 ID=mRNA_M-pyrifera_M_contig94917.21895.1|Name=mRNA_M-pyrifera_M_contig94917.21895.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=369bp|location=Sequence derived from alignment at M-pyrifera_M_contig94917:3..371+ (Macrocystis pyrifera P11B4 male)
CTGCTCAAGAAAAAGCTGGACAAAATGGGCGTCGATAACGTGGTGCCGGT
CCTGGGAACACAGAAATCGCCCGGCCTCAAACCGGAGTCCATCGACCTGG
CAATCATGGTCGACGTCTATCACGAGTTCGAGTTTCCTTATGAGATGATG
CTCGAGATCTCCAAGGCACTCAAACCTAAAGGCCGCGTCGTGCTGGTCGA
ATACCGTAAGGAAGATCCGACCGTCCCCATCAAGCTGGTTCACAAGATGT
CCGAGGCCCAGGCCAAAAAAGAGGTCTCCCGCCCCGAACTGAATCTCAAG
TGGAAAGAGACCATCGGCCTGCTCCCCCGCCAGCATATCCTCGTCTTCGA
AAAGACGGCTGACGAATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig94917:3..371+

>mRNA_M-pyrifera_M_contig94917.21895.1 ID=mRNA_M-pyrifera_M_contig94917.21895.1|Name=mRNA_M-pyrifera_M_contig94917.21895.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig94917:3..371+ (Macrocystis pyrifera P11B4 male)
ATGGGCGTCGATAACGTGGTGCCGGTCCTGGGAACACAGAAATCGCCCGG
CCTCAAACCGGAGTCCATCGACCTGGCAATCATGGTCGACGTCTATCACG
AGTTCGAGTTTCCTTATGAGATGATGCTCGAGATCTCCAAGGCACTCAAA
CCTAAAGGCCGCGTCGTGCTGGTCGAATACCGTAAGGAAGATCCGACCGT
CCCCATCAAGCTGGTTCACAAGATGTCCGAGGCCCAGGCCAAAAAAGAGG
TCTCCCGCCCCGAACTGAATCTCAAGTGGAAAGAGACCATCGGCCTGCTC
CCCCGCCAGCATATCCTCGTCTTCGAAAAGACGGCTGACGAATAAATGGG
CGTCGATAACGTGGTGCCGGTCCTGGGAACACAGAAATCGCCCGGCCTCA
AACCGGAGTCCATCGACCTGGCAATCATGGTCGACGTCTATCACGAGTTC
GAGTTTCCTTATGAGATGATGCTCGAGATCTCCAAGGCACTCAAACCTAA
AGGCCGCGTCGTGCTGGTCGAATACCGTAAGGAAGATCCGACCGTCCCCA
TCAAGCTGGTTCACAAGATGTCCGAGGCCCAGGCCAAAAAAGAGGTCTCC
CGCCCCGAACTGAATCTCAAGTGGAAAGAGACCATCGGCCTGCTCCCCCG
CCAGCATATCCTCGTCTTCGAAAAGACGGCTGACGAATAA
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