mRNA_M-pyrifera_M_contig94799.21869.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig94799.21869.1
Unique NamemRNA_M-pyrifera_M_contig94799.21869.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig94799.21869.1 vs. uniprot
Match: K3WA04_GLOUD (RYDR_ITPR domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WA04_GLOUD)

HSP 1 Score: 58.2 bits (139), Expect = 7.430e-8
Identity = 30/90 (33.33%), Postives = 55/90 (61.11%), Query Frame = 1 
Query:    4 SLRSLTRYDVVSSLLDLVLYEHNGLVDAALSLLFAYFTQHAALVDALEGVQLLVSSTTVRVFRHVDGLRVRLQTVVETSEVWLGLSDERD 273
            SL  L+R +V + L+ +++YE+  LV  AL LL   + QH  +V A++ +QLL++  T+ ++  +      L+ + ET+EVW+ L+ + D
Sbjct:  119 SLAQLSRRNVTTVLMQMLMYEYPPLVSKALELLLQQYNQHDQVVKAMQKLQLLITQETISIYNKLKDDVDNLRRLSETTEVWMDLTSKSD 208
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig94799.21869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
K3WA04_GLOUD7.430e-833.33RYDR_ITPR domain-containing protein n=1 Tax=Globis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig94799contigM-pyrifera_M_contig94799:428..700 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816861.694561-CDS-M-pyrifera_M_contig94799:427..7001622816861.694561-CDS-M-pyrifera_M_contig94799:427..700Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94799 428..700 +
1692278221.9397619-CDS-M-pyrifera_M_contig94799:427..7001692278221.9397619-CDS-M-pyrifera_M_contig94799:427..700Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94799 428..700 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig94799.21869.1prot_M-pyrifera_M_contig94799.21869.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig94799 428..700 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig94799.21869.1

>prot_M-pyrifera_M_contig94799.21869.1 ID=prot_M-pyrifera_M_contig94799.21869.1|Name=mRNA_M-pyrifera_M_contig94799.21869.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=91bp
LSLRSLTRYDVVSSLLDLVLYEHNGLVDAALSLLFAYFTQHAALVDALEG
VQLLVSSTTVRVFRHVDGLRVRLQTVVETSEVWLGLSDERD
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mRNA from alignment at M-pyrifera_M_contig94799:428..700+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig94799.21869.1 ID=mRNA_M-pyrifera_M_contig94799.21869.1|Name=mRNA_M-pyrifera_M_contig94799.21869.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=273bp|location=Sequence derived from alignment at M-pyrifera_M_contig94799:428..700+ (Macrocystis pyrifera P11B4 male)
CTCAGCTTGCGATCCCTTACTCGGTACGATGTTGTGTCCTCGCTGCTGGA
CTTGGTGCTGTACGAGCACAACGGCCTGGTGGACGCGGCGTTGTCGCTGC
TGTTTGCGTACTTTACGCAGCACGCTGCATTGGTGGACGCGTTGGAAGGA
GTGCAGTTGTTGGTGTCCAGCACCACAGTGCGCGTGTTTCGGCATGTTGA
TGGGCTGCGGGTGAGGTTGCAGACGGTGGTGGAGACGAGCGAGGTGTGGC
TGGGGCTGTCGGACGAGCGGGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig94799:428..700+

>mRNA_M-pyrifera_M_contig94799.21869.1 ID=mRNA_M-pyrifera_M_contig94799.21869.1|Name=mRNA_M-pyrifera_M_contig94799.21869.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig94799:428..700+ (Macrocystis pyrifera P11B4 male)
CTCAGCTTGCGATCCCTTACTCGGTACGATGTTGTGTCCTCGCTGCTGGA
CTTGGTGCTGTACGAGCACAACGGCCTGGTGGACGCGGCGTTGTCGCTGC
TGTTTGCGTACTTTACGCAGCACGCTGCATTGGTGGACGCGTTGGAAGGA
GTGCAGTTGTTGGTGTCCAGCACCACAGTGCGCGTGTTTCGGCATGTTGA
TGGGCTGCGGGTGAGGTTGCAGACGGTGGTGGAGACGAGCGAGGTGTGGC
TGGGGCTGTCGGACGAGCGGGACCTCAGCTTGCGATCCCTTACTCGGTAC
GATGTTGTGTCCTCGCTGCTGGACTTGGTGCTGTACGAGCACAACGGCCT
GGTGGACGCGGCGTTGTCGCTGCTGTTTGCGTACTTTACGCAGCACGCTG
CATTGGTGGACGCGTTGGAAGGAGTGCAGTTGTTGGTGTCCAGCACCACA
GTGCGCGTGTTTCGGCATGTTGATGGGCTGCGGGTGAGGTTGCAGACGGT
GGTGGAGACGAGCGAGGTGTGGCTGGGGCTGTCGGACGAGCGGGAC
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