mRNA_M-pyrifera_M_contig9475.21863.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9475.21863.1
Unique NamemRNA_M-pyrifera_M_contig9475.21863.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig9475.21863.1 vs. uniprot
Match: D8LJ91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ91_ECTSI)

HSP 1 Score: 243 bits (619), Expect = 1.450e-78
Identity = 125/138 (90.58%), Postives = 132/138 (95.65%), Query Frame = 1 
Query:    1 MGPLRITKHLDLNGRKVIVQPTVDVQGKTGEVVVAAELDGDTTSAELTVNQADESAVLEVCHRLDDDNVISPKVDLKTGDIAVRLNRSLGDDRAVKVTAQRENVDWEYLEGAWVVKGNVPLTNAGSS-SISFKRSITL 411
            MGPLRITKHLDLNGRKVIVQPTVDVQGKTGEVVVAAELDGD TSAELTVN A++SAVLEVCHRLDD+NVISPKVDLKTGDIAVRLNRSLGD RAVK TAQRENVDWEYLEGAWVVKGNVPLT+ G++ +ISFKRSITL
Sbjct:  155 MGPLRITKHLDLNGRKVIVQPTVDVQGKTGEVVVAAELDGDVTSAELTVNHAEDSAVLEVCHRLDDNNVISPKVDLKTGDIAVRLNRSLGDARAVKFTAQRENVDWEYLEGAWVVKGNVPLTSNGATGAISFKRSITL 292
[Close]
BLAST of mRNA_M-pyrifera_M_contig9475.21863.1 vs. uniprot
Match: A0A6H5K004_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K004_9PHAE)

HSP 1 Score: 241 bits (616), Expect = 4.620e-77
Identity = 124/138 (89.86%), Postives = 131/138 (94.93%), Query Frame = 1 
Query:    1 MGPLRITKHLDLNGRKVIVQPTVDVQGKTGEVVVAAELDGDTTSAELTVNQADESAVLEVCHRLDDDNVISPKVDLKTGDIAVRLNRSLGDDRAVKVTAQRENVDWEYLEGAWVVKGNVPLTNAGSS-SISFKRSITL 411
            MGPLRITKHLDLNGRKVIVQPTVDVQGKTGEVV+AAELDGD TSAELTVN A++SAVLEVCHRLDD+NVISPKVDLKTGDIAVRLNRSLGD RAVK TAQRENVDWEYLEG WVVKGNVPLT+ GS+ +ISFKRSITL
Sbjct:  235 MGPLRITKHLDLNGRKVIVQPTVDVQGKTGEVVIAAELDGDVTSAELTVNHAEDSAVLEVCHRLDDNNVISPKVDLKTGDIAVRLNRSLGDARAVKFTAQRENVDWEYLEGPWVVKGNVPLTSDGSTGAISFKRSITL 372
[Close]
BLAST of mRNA_M-pyrifera_M_contig9475.21863.1 vs. uniprot
Match: A0A836CCC7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCC7_9STRA)

HSP 1 Score: 177 bits (449), Expect = 3.120e-53
Identity = 83/136 (61.03%), Postives = 114/136 (83.82%), Query Frame = 1 
Query:    4 GPLRITKHLDLNGRKVIVQPTVDVQGKTGEVVVAAELDGDTTSAELTVNQADESAVLEVCHRLDDDNVISPKVDLKTGDIAVRLNRSLGDDRAVKVTAQRENVDWEYLEGAWVVKGNVPLTNAGSSSISFKRSITL 411
            GPL++ K LD+NGR++ ++PT++V+ +TGE+V+  E+D D T+AELT+NQADESA LEV HRLDD NV+SPKV+LK+GD++VRLNR+L +   ++VTA R+NVDWE+ E AW VKGN+PL + G+S+ISFKRSI L
Sbjct:  124 GPLKLRKVLDMNGRRLTLEPTINVRDRTGELVINTEVDEDKTTAELTLNQADESASLEVSHRLDDFNVVSPKVNLKSGDVSVRLNRALDNGGVIEVTADRKNVDWEFNENAWTVKGNIPLEDTGASTISFKRSINL 259
[Close]
BLAST of mRNA_M-pyrifera_M_contig9475.21863.1 vs. uniprot
Match: A0A836CPR3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPR3_9STRA)

HSP 1 Score: 153 bits (387), Expect = 7.300e-44
Identity = 74/136 (54.41%), Postives = 104/136 (76.47%), Query Frame = 1 
Query:    4 GPLRITKHLDLNGRKVIVQPTVDVQGKTGEVVVAAELDGDTTSAELTVNQADESAVLEVCHRLDDDNVISPKVDLKTGDIAVRLNRSLGDDRAVKVTAQRENVDWEYLEGAWVVKGNVPLTNAGSSSISFKRSITL 411
            GPLRI K  D NGR+++V+P  +V+ +TGE+V+ +E+D D T+AELT++QA +SA LEV HRLD+ N++ PKVDLK GD++VRL R+L +   + VTA + N+DWE  E +W VKGN+PL +   S+ISFKRSI+L
Sbjct:  125 GPLRIRKVFDANGRRLVVKPKFNVRDRTGELVINSEIDSDITTAELTLDQATDSASLEVSHRLDEYNIVCPKVDLKNGDMSVRLVRALENGGVLGVTADKRNIDWELEEDSWTVKGNIPLEDTQRSTISFKRSISL 260
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9475.21863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LJ91_ECTSI1.450e-7890.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K004_9PHAE4.620e-7789.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CCC7_9STRA3.120e-5361.03Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CPR3_9STRA7.300e-4454.41Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9475contigM-pyrifera_M_contig9475:9629..10042 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_005220.1
Exons1
Model size414
Cds size414
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816861.3523343-CDS-M-pyrifera_M_contig9475:9628..100421622816861.3523343-CDS-M-pyrifera_M_contig9475:9628..10042Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9475 9629..10042 -
1692278221.7193687-CDS-M-pyrifera_M_contig9475:9628..100421692278221.7193687-CDS-M-pyrifera_M_contig9475:9628..10042Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9475 9629..10042 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9475.21863.1prot_M-pyrifera_M_contig9475.21863.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9475 9629..10042 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9475.21863.1

>prot_M-pyrifera_M_contig9475.21863.1 ID=prot_M-pyrifera_M_contig9475.21863.1|Name=mRNA_M-pyrifera_M_contig9475.21863.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=138bp
MGPLRITKHLDLNGRKVIVQPTVDVQGKTGEVVVAAELDGDTTSAELTVN
QADESAVLEVCHRLDDDNVISPKVDLKTGDIAVRLNRSLGDDRAVKVTAQ
RENVDWEYLEGAWVVKGNVPLTNAGSSSISFKRSITL*
back to top

mRNA from alignment at M-pyrifera_M_contig9475:9629..10042-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9475.21863.1 ID=mRNA_M-pyrifera_M_contig9475.21863.1|Name=mRNA_M-pyrifera_M_contig9475.21863.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig9475:9629..10042- (Macrocystis pyrifera P11B4 male)
ATGGGCCCCCTGCGCATCACCAAGCACCTCGACCTTAACGGGCGCAAGGT
GATCGTGCAGCCCACCGTGGACGTGCAGGGCAAGACGGGGGAGGTGGTCG
TGGCCGCCGAGCTCGATGGGGACACCACCTCGGCCGAGCTGACCGTGAAC
CAAGCCGACGAGTCCGCCGTGCTCGAGGTGTGCCACCGGCTGGACGACGA
CAACGTCATCTCGCCCAAGGTGGACCTCAAGACCGGGGACATCGCAGTGC
GCCTTAACCGGAGCTTGGGAGACGACCGTGCCGTCAAGGTGACCGCGCAG
CGCGAGAACGTGGACTGGGAGTACCTCGAGGGCGCGTGGGTGGTGAAGGG
CAACGTGCCCCTAACCAACGCCGGCTCCTCCTCCATCTCTTTCAAGCGCT
CGATCACCCTTTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig9475:9629..10042-

>mRNA_M-pyrifera_M_contig9475.21863.1 ID=mRNA_M-pyrifera_M_contig9475.21863.1|Name=mRNA_M-pyrifera_M_contig9475.21863.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig9475:9629..10042- (Macrocystis pyrifera P11B4 male)
ATGGGCCCCCTGCGCATCACCAAGCACCTCGACCTTAACGGGCGCAAGGT
GATCGTGCAGCCCACCGTGGACGTGCAGGGCAAGACGGGGGAGGTGGTCG
TGGCCGCCGAGCTCGATGGGGACACCACCTCGGCCGAGCTGACCGTGAAC
CAAGCCGACGAGTCCGCCGTGCTCGAGGTGTGCCACCGGCTGGACGACGA
CAACGTCATCTCGCCCAAGGTGGACCTCAAGACCGGGGACATCGCAGTGC
GCCTTAACCGGAGCTTGGGAGACGACCGTGCCGTCAAGGTGACCGCGCAG
CGCGAGAACGTGGACTGGGAGTACCTCGAGGGCGCGTGGGTGGTGAAGGG
CAACGTGCCCCTAACCAACGCCGGCTCCTCCTCCATCTCTTTCAAGCGCT
CGATCACCCTTTAAATGGGCCCCCTGCGCATCACCAAGCACCTCGACCTT
AACGGGCGCAAGGTGATCGTGCAGCCCACCGTGGACGTGCAGGGCAAGAC
GGGGGAGGTGGTCGTGGCCGCCGAGCTCGATGGGGACACCACCTCGGCCG
AGCTGACCGTGAACCAAGCCGACGAGTCCGCCGTGCTCGAGGTGTGCCAC
CGGCTGGACGACGACAACGTCATCTCGCCCAAGGTGGACCTCAAGACCGG
GGACATCGCAGTGCGCCTTAACCGGAGCTTGGGAGACGACCGTGCCGTCA
AGGTGACCGCGCAGCGCGAGAACGTGGACTGGGAGTACCTCGAGGGCGCG
TGGGTGGTGAAGGGCAACGTGCCCCTAACCAACGCCGGCTCCTCCTCCAT
CTCTTTCAAGCGCTCGATCACCCTTTAA
back to top