mRNA_M-pyrifera_M_contig94705.21848.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig94705.21848.1
Unique NamemRNA_M-pyrifera_M_contig94705.21848.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig94705.21848.1 vs. uniprot
Match: A0A8B7E2I2_HYDVU (Dynamin GTPase n=1 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B7E2I2_HYDVU)

HSP 1 Score: 122 bits (306), Expect = 1.120e-34
Identity = 59/68 (86.76%), Postives = 66/68 (97.06%), Query Frame = 1 
Query:    7 LDQLIPVINKLQDVFNTVGGDAIDLPQIVVIGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLVLQLV 210
            +DQLIPVINKLQDVFNTVG +AI LPQIVV+G+QSSGKSSVLENIVG+DFLPRGSGIVTRRPL+LQL+
Sbjct:    1 MDQLIPVINKLQDVFNTVGSEAIQLPQIVVVGTQSSGKSSVLENIVGKDFLPRGSGIVTRRPLILQLI 68
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BLAST of mRNA_M-pyrifera_M_contig94705.21848.1 vs. uniprot
Match: UPI0003F07C60 (dynamin-1-like protein-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F07C60)

HSP 1 Score: 119 bits (299), Expect = 1.560e-33
Identity = 58/68 (85.29%), Postives = 65/68 (95.59%), Query Frame = 1 
Query:    7 LDQLIPVINKLQDVFNTVGGDAIDLPQIVVIGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLVLQLV 210
            ++ LIPVINKLQDVFNTVG D+I LPQI+V+G+QSSGKSSVLEN+VGRDFLPRGSGIVTRRPLVLQLV
Sbjct:    1 MEALIPVINKLQDVFNTVGSDSIQLPQIIVVGAQSSGKSSVLENLVGRDFLPRGSGIVTRRPLVLQLV 68
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BLAST of mRNA_M-pyrifera_M_contig94705.21848.1 vs. uniprot
Match: A0A7S1V6X3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Sexangularia sp. CB-2014 TaxID=1486929 RepID=A0A7S1V6X3_9EUKA)

HSP 1 Score: 117 bits (294), Expect = 1.200e-32
Identity = 54/69 (78.26%), Postives = 65/69 (94.20%), Query Frame = 1 
Query:    4 SLDQLIPVINKLQDVFNTVGGDAIDLPQIVVIGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLVLQLV 210
            +++QLIP+IN+LQDVFN +G D +DLPQI V+GSQSSGKSSVLEN+VG+DFLPRGSGIVTRRPLVLQL+
Sbjct:   25 TMEQLIPLINRLQDVFNAIGSDPVDLPQIAVVGSQSSGKSSVLENVVGKDFLPRGSGIVTRRPLVLQLI 93
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BLAST of mRNA_M-pyrifera_M_contig94705.21848.1 vs. uniprot
Match: L8HLM2_ACACA (Dynamin domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HLM2_ACACA)

HSP 1 Score: 127 bits (318), Expect = 2.030e-32
Identity = 63/70 (90.00%), Postives = 67/70 (95.71%), Query Frame = 1 
Query:    1 MSLDQLIPVINKLQDVFNTVGGDAIDLPQIVVIGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLVLQLV 210
            MS+DQLIPVINKLQDVFN +G DAIDLPQIVV+GSQSSGKSSVLENIVGRDFLPRG GIVTRRPLVLQL+
Sbjct:  477 MSMDQLIPVINKLQDVFNALGTDAIDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGQGIVTRRPLVLQLI 546
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BLAST of mRNA_M-pyrifera_M_contig94705.21848.1 vs. uniprot
Match: A3F4W5_TAEAS (Dynamin GTPase (Fragment) n=1 Tax=Taenia asiatica TaxID=60517 RepID=A3F4W5_TAEAS)

HSP 1 Score: 119 bits (297), Expect = 2.740e-32
Identity = 59/68 (86.76%), Postives = 64/68 (94.12%), Query Frame = 1 
Query:    7 LDQLIPVINKLQDVFNTVGGDAIDLPQIVVIGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLVLQLV 210
            ++ LIPVINKLQDVFNTVG + + LPQIVVIGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLVLQL+
Sbjct:    1 METLIPVINKLQDVFNTVGSEILQLPQIVVIGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLVLQLI 68
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BLAST of mRNA_M-pyrifera_M_contig94705.21848.1 vs. uniprot
Match: A0A674IYG1_TERCA (Dynamin-type G domain-containing protein n=1 Tax=Terrapene carolina triunguis TaxID=2587831 RepID=A0A674IYG1_TERCA)

HSP 1 Score: 115 bits (288), Expect = 3.550e-32
Identity = 57/68 (83.82%), Postives = 64/68 (94.12%), Query Frame = 1 
Query:    7 LDQLIPVINKLQDVFNTVGGDAIDLPQIVVIGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLVLQLV 210
            ++ LIPVINKLQ++FNTVG + I LPQIVVIG+QSSGKSSVLE+IVGRDFLPRGSGIVTRRPLVLQLV
Sbjct:    1 METLIPVINKLQEIFNTVGAEVIQLPQIVVIGAQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLV 68
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BLAST of mRNA_M-pyrifera_M_contig94705.21848.1 vs. uniprot
Match: A0A8J5N614_HOMAM (Dynamin GTPase n=1 Tax=Homarus americanus TaxID=6706 RepID=A0A8J5N614_HOMAM)

HSP 1 Score: 115 bits (289), Expect = 3.980e-32
Identity = 58/68 (85.29%), Postives = 63/68 (92.65%), Query Frame = 1 
Query:    7 LDQLIPVINKLQDVFNTVGGDAIDLPQIVVIGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLVLQLV 210
            ++ LIPVINKLQDVFNTVG DAI LPQIVV+GSQSSGKSSVLE++VGR FLPRG GIVTRRPLVLQLV
Sbjct:    1 MEALIPVINKLQDVFNTVGADAIQLPQIVVVGSQSSGKSSVLESLVGRSFLPRGVGIVTRRPLVLQLV 68
[Close]
BLAST of mRNA_M-pyrifera_M_contig94705.21848.1 vs. uniprot
Match: A0A7S4IAN5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IAN5_9EUKA)

HSP 1 Score: 117 bits (292), Expect = 4.600e-32
Identity = 57/67 (85.07%), Postives = 64/67 (95.52%), Query Frame = 1 
Query:    7 LDQLIPVINKLQDVFNTVGGDAIDLPQIVVIGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLVLQL 207
            ++QL+PVINKLQDVF+ +GGD IDLPQI VIGSQSSGKSSVLE+IVG+DFLPRGSGIVTRRPLVLQL
Sbjct:    1 MEQLLPVINKLQDVFSAIGGDRIDLPQICVIGSQSSGKSSVLEHIVGKDFLPRGSGIVTRRPLVLQL 67
[Close]
BLAST of mRNA_M-pyrifera_M_contig94705.21848.1 vs. uniprot
Match: A0A1R0GM74_9FUNG (Dynamin-A n=1 Tax=Smittium mucronatum TaxID=133383 RepID=A0A1R0GM74_9FUNG)

HSP 1 Score: 117 bits (293), Expect = 4.830e-32
Identity = 57/68 (83.82%), Postives = 63/68 (92.65%), Query Frame = 1 
Query:    7 LDQLIPVINKLQDVFNTVGGDAIDLPQIVVIGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLVLQLV 210
            +D LIP +NKLQDVFNT+G D IDLPQIVVIGSQSSGKSSVLEN+VG DFLPRGSG+VTRRPLVLQL+
Sbjct:    1 MDDLIPTVNKLQDVFNTLGQDKIDLPQIVVIGSQSSGKSSVLENLVGIDFLPRGSGVVTRRPLVLQLI 68
[Close]
BLAST of mRNA_M-pyrifera_M_contig94705.21848.1 vs. uniprot
Match: UPI000E7753AF (dynamin-1-like protein n=1 Tax=Terrapene carolina triunguis TaxID=2587831 RepID=UPI000E7753AF)

HSP 1 Score: 115 bits (288), Expect = 8.040e-32
Identity = 57/68 (83.82%), Postives = 64/68 (94.12%), Query Frame = 1 
Query:    7 LDQLIPVINKLQDVFNTVGGDAIDLPQIVVIGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLVLQLV 210
            ++ LIPVINKLQ++FNTVG + I LPQIVVIG+QSSGKSSVLE+IVGRDFLPRGSGIVTRRPLVLQLV
Sbjct:    1 METLIPVINKLQEIFNTVGAEVIQLPQIVVIGAQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLV 68
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig94705.21848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8B7E2I2_HYDVU1.120e-3486.76Dynamin GTPase n=1 Tax=Hydra vulgaris TaxID=6087 R... [more]
UPI0003F07C601.560e-3385.29dynamin-1-like protein-like n=1 Tax=Saccoglossus k... [more]
A0A7S1V6X3_9EUKA1.200e-3278.26Hypothetical protein (Fragment) n=1 Tax=Sexangular... [more]
L8HLM2_ACACA2.030e-3290.00Dynamin domain containing protein n=1 Tax=Acantham... [more]
A3F4W5_TAEAS2.740e-3286.76Dynamin GTPase (Fragment) n=1 Tax=Taenia asiatica ... [more]
A0A674IYG1_TERCA3.550e-3283.82Dynamin-type G domain-containing protein n=1 Tax=T... [more]
A0A8J5N614_HOMAM3.980e-3285.29Dynamin GTPase n=1 Tax=Homarus americanus TaxID=67... [more]
A0A7S4IAN5_9EUKA4.600e-3285.07Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A1R0GM74_9FUNG4.830e-3283.82Dynamin-A n=1 Tax=Smittium mucronatum TaxID=133383... [more]
UPI000E7753AF8.040e-3283.82dynamin-1-like protein n=1 Tax=Terrapene carolina ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig94705contigM-pyrifera_M_contig94705:74..283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score123.2
Seed ortholog evalue4.7e-26
Seed eggNOG ortholog44689.DDB0216177
Preferred nameDYN1
KEGG koko:K01528,ko:K17065
KEGG Pathwayko04072,ko04139,ko04144,ko04214,ko04217,ko04621,ko04668,ko04721,ko04961,ko05100,map04072,map04139,map04144,map04214,map04217,map04621,map04668,map04721,map04961,map05100
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000266,GO:0000331,GO:0000920,GO:0001882,GO:0001883,GO:0001891,GO:0003373,GO:0003374,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005522,GO:0005525,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005773,GO:0005886,GO:0006508,GO:0006807,GO:0006810,GO:0006873,GO:0006885,GO:0006897,GO:0006907,GO:0006909,GO:0006950,GO:0006970,GO:0006971,GO:0006996,GO:0006997,GO:0007005,GO:0007010,GO:0007015,GO:0007032,GO:0007155,GO:0007163,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0008289,GO:0009628,GO:0009653,GO:0009987,GO:0010256,GO:0010467,GO:0015631,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016462,GO:0016485,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019538,GO:0019725,GO:0019867,GO:0022607,GO:0022610,GO:0030003,GO:0030004,GO:0030029,GO:0030036,GO:0030139,GO:0030587,GO:0030641,GO:0031090,GO:0031143,GO:0031288,GO:0031410,GO:0031589,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0031982,GO:0032153,GO:0032154,GO:0032155,GO:0032502,GO:0032535,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033554,GO:0034622,GO:0035639,GO:0036094,GO:0042592,GO:0042802,GO:0042995,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044238,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044656,GO:0045335,GO:0045851,GO:0048285,GO:0048311,GO:0048312,GO:0048856,GO:0048878,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051258,GO:0051301,GO:0051452,GO:0051453,GO:0051604,GO:0051640,GO:0051641,GO:0051646,GO:0051703,GO:0051704,GO:0051716,GO:0055067,GO:0055080,GO:0055082,GO:0060151,GO:0061024,GO:0061025,GO:0065003,GO:0065007,GO:0065008,GO:0071214,GO:0071470,GO:0071476,GO:0071704,GO:0071840,GO:0071944,GO:0090066,GO:0090148,GO:0090382,GO:0090383,GO:0090702,GO:0097159,GO:0097204,GO:0097367,GO:0097435,GO:0097708,GO:0098588,GO:0098590,GO:0098609,GO:0098657,GO:0098771,GO:0098805,GO:0099120,GO:0104004,GO:0120025,GO:1900756,GO:1901265,GO:1901363,GO:1901564
EggNOG free text desc.Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family
EggNOG OGs3X863@554915,COG0699@1,KOG0446@2759
EC3.6.5.5
COG Functional cat.U
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03029,ko04131,ko04147
Exons1
Model size210
Cds size210
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816860.603484-CDS-M-pyrifera_M_contig94705:73..2831622816860.603484-CDS-M-pyrifera_M_contig94705:73..283Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94705 74..283 +
1692278221.3485637-CDS-M-pyrifera_M_contig94705:73..2831692278221.3485637-CDS-M-pyrifera_M_contig94705:73..283Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94705 74..283 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig94705.21848.1prot_M-pyrifera_M_contig94705.21848.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig94705 74..283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig94705.21848.1

>prot_M-pyrifera_M_contig94705.21848.1 ID=prot_M-pyrifera_M_contig94705.21848.1|Name=mRNA_M-pyrifera_M_contig94705.21848.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
MSLDQLIPVINKLQDVFNTVGGDAIDLPQIVVIGSQSSGKSSVLENIVGR
DFLPRGSGIVTRRPLVLQLV
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mRNA from alignment at M-pyrifera_M_contig94705:74..283+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig94705.21848.1 ID=mRNA_M-pyrifera_M_contig94705.21848.1|Name=mRNA_M-pyrifera_M_contig94705.21848.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig94705:74..283+ (Macrocystis pyrifera P11B4 male)
ATGTCGCTAGACCAGCTGATCCCAGTGATCAACAAGCTCCAGGATGTTTT
CAACACGGTCGGCGGGGACGCCATCGACCTTCCCCAGATTGTTGTGATTG
GAAGCCAGTCCAGCGGCAAGAGCAGTGTGCTCGAGAACATTGTCGGACGG
GACTTCCTCCCTCGAGGCAGCGGCATCGTCACGCGTCGGCCTCTCGTGCT
CCAGCTCGTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig94705:74..283+

>mRNA_M-pyrifera_M_contig94705.21848.1 ID=mRNA_M-pyrifera_M_contig94705.21848.1|Name=mRNA_M-pyrifera_M_contig94705.21848.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig94705:74..283+ (Macrocystis pyrifera P11B4 male)
ATGTCGCTAGACCAGCTGATCCCAGTGATCAACAAGCTCCAGGATGTTTT
CAACACGGTCGGCGGGGACGCCATCGACCTTCCCCAGATTGTTGTGATTG
GAAGCCAGTCCAGCGGCAAGAGCAGTGTGCTCGAGAACATTGTCGGACGG
GACTTCCTCCCTCGAGGCAGCGGCATCGTCACGCGTCGGCCTCTCGTGCT
CCAGCTCGTTATGTCGCTAGACCAGCTGATCCCAGTGATCAACAAGCTCC
AGGATGTTTTCAACACGGTCGGCGGGGACGCCATCGACCTTCCCCAGATT
GTTGTGATTGGAAGCCAGTCCAGCGGCAAGAGCAGTGTGCTCGAGAACAT
TGTCGGACGGGACTTCCTCCCTCGAGGCAGCGGCATCGTCACGCGTCGGC
CTCTCGTGCTCCAGCTCGTT
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