mRNA_M-pyrifera_M_contig94702.21846.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig94702.21846.1
Unique NamemRNA_M-pyrifera_M_contig94702.21846.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig94702.21846.1 vs. uniprot
Match: R5G2U7_9PORP (TPR domain protein n=2 Tax=Porphyromonas TaxID=836 RepID=R5G2U7_9PORP)

HSP 1 Score: 65.5 bits (158), Expect = 1.110e-8
Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:  586 IYYNEGAEAVNSANKLTDDDEYTKAREIALGYFRKAIPYLEKVHMLIPDD 735
            +Y+N+GA+A+N AN +TD D+YT A E A  ++ KA+PYLEKVH L P++
Sbjct:  333 VYFNQGADAINEANNITDQDKYTVALEKAKSFYTKALPYLEKVHNLDPEN 382
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BLAST of mRNA_M-pyrifera_M_contig94702.21846.1 vs. uniprot
Match: A0A7K3WST9_9FLAO (Tetratricopeptide repeat protein n=1 Tax=Cryomorpha ignava TaxID=101383 RepID=A0A7K3WST9_9FLAO)

HSP 1 Score: 58.9 bits (141), Expect = 1.700e-6
Identity = 125/243 (51.44%), Postives = 149/243 (61.32%), Query Frame = 1 
Query:    7 KDLNNRYLRTSTLLFLNGVDLFNEGDYNQALKNFEFNEQIKLEYQIIDSLSIYNQALCFEQLGEIDKAIDSYKRTIEIEFDEINSYITIINLLEQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIYYNEGAEAVNSANKLTDDDEYTKAREIALGYFRKAIPYLEKVHMLIPDD 735
            +D+++  L   T     G+  +NE  +  A   F   EQ   E    D+L++YN  L  EQ G+++ AI+ YK+    ++   N YI + NL E+E                        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     +G E  N AN++TD+ +Y  AR  A   F KA PYLEK H L P D
Sbjct:  104 EDIDSGVLVMKTFASNLGIQAYNEKQFESARDYFLIGEQAAAEAGEFDTLAVYNAGLAAEQAGDMETAIEQYKKAAGAQYLGANMYIYMANLYEKEKMPEKYLEIVKEGRKAYPDNSDLIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGVEMNNGANEITDNKKYNAARAEAKKVFEKARPYLEKAHALEPGD 346
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BLAST of mRNA_M-pyrifera_M_contig94702.21846.1 vs. uniprot
Match: A0A351DX82_9FLAO (Uncharacterized protein n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A351DX82_9FLAO)

HSP 1 Score: 56.6 bits (135), Expect = 1.030e-5
Identity = 24/78 (30.77%), Postives = 44/78 (56.41%), Query Frame = 1 
Query:   58 GVDLFNEGDYNQALKNFEFNEQIKLEYQIIDSLSIYNQALCFEQLGEIDKAIDSYKRTIEIEFDEINSYITIINLLEQ 291
            G+  +N  D+ +A   F+    I   +  +D+++I+N ALC+E  G ++ A+  Y+R  +IE+   N Y+ I NL  +
Sbjct:  123 GIQNYNTKDFERAGSFFDLASDIAFAFDAVDTMAIFNSALCYENAGNLELAVARYERCADIEYQVPNVYLFISNLYRE 200
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BLAST of mRNA_M-pyrifera_M_contig94702.21846.1 vs. uniprot
Match: A0A3B9MZC9_9BACT (Uncharacterized protein n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A3B9MZC9_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 2.510e-5
Identity = 23/50 (46.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:  586 IYYNEGAEAVNSANKLTDDDEYTKAREIALGYFRKAIPYLEKVHMLIPDD 735
            +Y+NEG E  ++ANK+TD+ +Y  A+++A   F +A+PY+EK H L P+D
Sbjct:  312 LYFNEGVELTDAANKITDNKKYEVAKKVADDKFIEALPYIEKSHELKPED 361
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BLAST of mRNA_M-pyrifera_M_contig94702.21846.1 vs. uniprot
Match: A0A2A5FLC5_9BACT (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A2A5FLC5_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 3.350e-5
Identity = 25/79 (31.65%), Postives = 45/79 (56.96%), Query Frame = 1 
Query:   58 GVDLFNEGDYNQALKNFEFNEQIKLEYQIIDSLSIYNQALCFEQLGEIDKAIDSYKRTIEIEFDEINSYITIINLLEQE 294
            G++ +N   ++ A   F+   ++  E++I+D+++IYN ALC+E+    D AI+ Y    EIE+   N ++ I  L   E
Sbjct:  119 GIENYNNATFDVAGHLFDLASEVAREFEIVDTMAIYNAALCYEKANLTDLAIERYSDCAEIEYQVPNVFLFISTLYRNE 197
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BLAST of mRNA_M-pyrifera_M_contig94702.21846.1 vs. uniprot
Match: A0A353VI24_9FLAO (Uncharacterized protein n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A353VI24_9FLAO)

HSP 1 Score: 54.7 bits (130), Expect = 4.490e-5
Identity = 23/84 (27.38%), Postives = 48/84 (57.14%), Query Frame = 1 
Query:    1 DEKDLNNRYLRTSTLLFLNGVDLFNEGDYNQALKNFEFNEQIKLEYQIIDSLSIYNQALCFEQLGEIDKAIDSYKRTIEIEFDE 252
            D   LNN Y   +  LF   +D +N  +Y +A + F  +  IK+E++I+D+L+ +N AL  ++  + +K ++ Y +  + ++ +
Sbjct:  105 DMNALNNDYKLNADALFQMAIDCYNRAEYQEAARGFGLSGDIKMEFEILDTLAYFNAALSADKAEDYEKGLEYYNKIKDTDYKD 188
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig94702.21846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
R5G2U7_9PORP1.110e-854.00TPR domain protein n=2 Tax=Porphyromonas TaxID=836... [more]
A0A7K3WST9_9FLAO1.700e-651.44Tetratricopeptide repeat protein n=1 Tax=Cryomorph... [more]
A0A351DX82_9FLAO1.030e-530.77Uncharacterized protein n=1 Tax=Flavobacteriales b... [more]
A0A3B9MZC9_9BACT2.510e-546.00Uncharacterized protein n=1 Tax=Bacteroidales bact... [more]
A0A2A5FLC5_9BACT3.350e-531.65Uncharacterized protein n=1 Tax=Bacteroidetes bact... [more]
A0A353VI24_9FLAO4.490e-527.38Uncharacterized protein n=1 Tax=Flavobacteriales b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig94702contigM-pyrifera_M_contig94702:3..737 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score66.2
Seed ortholog evalue2.4e-08
Seed eggNOG ortholog1122975.AQVC01000043_gene207
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Tetratricopeptide repeat protein
EggNOG OGs2FST3@200643,4NIY9@976,COG0457@1,COG0457@2
COG Functional cat.S
Best tax levelBacteroidia
Best eggNOG OGNA|NA|NA
Exons1
Model size735
Cds size735
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816860.5336719-CDS-M-pyrifera_M_contig94702:2..7371622816860.5336719-CDS-M-pyrifera_M_contig94702:2..737Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94702 3..737 +
1692278221.309315-CDS-M-pyrifera_M_contig94702:2..7371692278221.309315-CDS-M-pyrifera_M_contig94702:2..737Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94702 3..737 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig94702.21846.1prot_M-pyrifera_M_contig94702.21846.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig94702 3..737 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig94702.21846.1

>prot_M-pyrifera_M_contig94702.21846.1 ID=prot_M-pyrifera_M_contig94702.21846.1|Name=mRNA_M-pyrifera_M_contig94702.21846.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=245bp
DEKDLNNRYLRTSTLLFLNGVDLFNEGDYNQALKNFEFNEQIKLEYQIID
SLSIYNQALCFEQLGEIDKAIDSYKRTIEIEFDEINSYITIINLLEQEGD
IEEALKFAAKARDKYPNDIDLIKSEIDLFLGLGDFNEALKSLNKAIESEP
ENSALYFARGSVYDSKNEPEKAKTDFIKALELNPDDVNAAYNLGAIYYNE
GAEAVNSANKLTDDDEYTKAREIALGYFRKAIPYLEKVHMLIPDD
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mRNA from alignment at M-pyrifera_M_contig94702:3..737+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig94702.21846.1 ID=mRNA_M-pyrifera_M_contig94702.21846.1|Name=mRNA_M-pyrifera_M_contig94702.21846.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=735bp|location=Sequence derived from alignment at M-pyrifera_M_contig94702:3..737+ (Macrocystis pyrifera P11B4 male)
GATGAAAAGGATTTAAATAATCGGTATTTAAGAACTAGTACTCTACTTTT
TCTAAATGGGGTCGATTTATTTAATGAAGGTGATTATAATCAGGCTTTAA
AAAATTTCGAGTTTAACGAACAAATCAAACTCGAATATCAAATTATAGAT
TCCTTATCAATTTATAATCAGGCACTTTGTTTTGAACAATTAGGAGAAAT
TGATAAAGCGATAGATAGCTATAAAAGAACAATTGAAATAGAATTTGATG
AGATTAATAGCTATATAACTATCATTAATTTATTAGAGCAAGAAGGAGAT
ATTGAGGAAGCATTAAAATTTGCTGCTAAAGCTCGCGATAAATACCCAAA
TGACATCGATTTAATAAAATCAGAAATCGATCTATTTTTAGGCTTAGGGG
ATTTCAATGAAGCTTTGAAAAGCTTAAACAAAGCAATAGAATCTGAACCG
GAAAATTCGGCACTTTATTTTGCAAGAGGTTCAGTGTACGATAGTAAAAA
TGAACCTGAAAAAGCAAAAACAGACTTTATTAAAGCATTAGAATTAAATC
CTGATGATGTGAATGCTGCCTATAATTTAGGTGCCATCTATTATAATGAA
GGAGCCGAGGCCGTGAATAGTGCAAATAAATTAACCGATGATGATGAGTA
TACTAAGGCGAGAGAAATCGCTTTAGGTTACTTTAGAAAAGCCATTCCAT
ACTTAGAAAAAGTACATATGCTAATTCCGGATGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig94702:3..737+

>mRNA_M-pyrifera_M_contig94702.21846.1 ID=mRNA_M-pyrifera_M_contig94702.21846.1|Name=mRNA_M-pyrifera_M_contig94702.21846.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1470bp|location=Sequence derived from alignment at M-pyrifera_M_contig94702:3..737+ (Macrocystis pyrifera P11B4 male)
GATGAAAAGGATTTAAATAATCGGTATTTAAGAACTAGTACTCTACTTTT
TCTAAATGGGGTCGATTTATTTAATGAAGGTGATTATAATCAGGCTTTAA
AAAATTTCGAGTTTAACGAACAAATCAAACTCGAATATCAAATTATAGAT
TCCTTATCAATTTATAATCAGGCACTTTGTTTTGAACAATTAGGAGAAAT
TGATAAAGCGATAGATAGCTATAAAAGAACAATTGAAATAGAATTTGATG
AGATTAATAGCTATATAACTATCATTAATTTATTAGAGCAAGAAGGAGAT
ATTGAGGAAGCATTAAAATTTGCTGCTAAAGCTCGCGATAAATACCCAAA
TGACATCGATTTAATAAAATCAGAAATCGATCTATTTTTAGGCTTAGGGG
ATTTCAATGAAGCTTTGAAAAGCTTAAACAAAGCAATAGAATCTGAACCG
GAAAATTCGGCACTTTATTTTGCAAGAGGTTCAGTGTACGATAGTAAAAA
TGAACCTGAAAAAGCAAAAACAGACTTTATTAAAGCATTAGAATTAAATC
CTGATGATGTGAATGCTGCCTATAATTTAGGTGCCATCTATTATAATGAA
GGAGCCGAGGCCGTGAATAGTGCAAATAAATTAACCGATGATGATGAGTA
TACTAAGGCGAGAGAAATCGCTTTAGGTTACTTTAGAAAAGCCATTCCAT
ACTTAGAAAAAGTACATATGCTAATTCCGGATGATGATGAAAAGGATTTA
AATAATCGGTATTTAAGAACTAGTACTCTACTTTTTCTAAATGGGGTCGA
TTTATTTAATGAAGGTGATTATAATCAGGCTTTAAAAAATTTCGAGTTTA
ACGAACAAATCAAACTCGAATATCAAATTATAGATTCCTTATCAATTTAT
AATCAGGCACTTTGTTTTGAACAATTAGGAGAAATTGATAAAGCGATAGA
TAGCTATAAAAGAACAATTGAAATAGAATTTGATGAGATTAATAGCTATA
TAACTATCATTAATTTATTAGAGCAAGAAGGAGATATTGAGGAAGCATTA
AAATTTGCTGCTAAAGCTCGCGATAAATACCCAAATGACATCGATTTAAT
AAAATCAGAAATCGATCTATTTTTAGGCTTAGGGGATTTCAATGAAGCTT
TGAAAAGCTTAAACAAAGCAATAGAATCTGAACCGGAAAATTCGGCACTT
TATTTTGCAAGAGGTTCAGTGTACGATAGTAAAAATGAACCTGAAAAAGC
AAAAACAGACTTTATTAAAGCATTAGAATTAAATCCTGATGATGTGAATG
CTGCCTATAATTTAGGTGCCATCTATTATAATGAAGGAGCCGAGGCCGTG
AATAGTGCAAATAAATTAACCGATGATGATGAGTATACTAAGGCGAGAGA
AATCGCTTTAGGTTACTTTAGAAAAGCCATTCCATACTTAGAAAAAGTAC
ATATGCTAATTCCGGATGAT
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