mRNA_M-pyrifera_M_contig94682.21843.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig94682.21843.1
Unique NamemRNA_M-pyrifera_M_contig94682.21843.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig94682.21843.1 vs. uniprot
Match: D7FTT4_ECTSI (Aldo/keto reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT4_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 1.640e-25
Identity = 48/58 (82.76%), Postives = 53/58 (91.38%), Query Frame = 1
Query:    1 VQYSILDQRPGKRMAGLCEERGVKLLCYGTVLGGLLSEKWMGRPQPTRADFTTVSEMK 174
            VQYS+LDQRPG+RMA L  ERGV LLCYGTVLGGLLSEKW+G+P PTR+DFTTVSEMK
Sbjct:  180 VQYSLLDQRPGQRMATLAAERGVGLLCYGTVLGGLLSEKWIGKPTPTRSDFTTVSEMK 237          
BLAST of mRNA_M-pyrifera_M_contig94682.21843.1 vs. uniprot
Match: A0A836CKF2_9STRA (Aldo/keto reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKF2_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 3.090e-18
Identity = 37/66 (56.06%), Postives = 46/66 (69.70%), Query Frame = 1
Query:    1 VQYSILDQRPGKRMAGLCEERGVKLLCYGTVLGGLLSEKWMGRPQPTRADFTTVSEMKVIYSCVCW 198
            VQYS+LD RP  RM  LC E G++LLCYGT+LGG LS+KW+G+P P +A F TVS+ K       W
Sbjct:  237 VQYSMLDTRPAARMQDLCTECGIQLLCYGTLLGGFLSDKWVGKPAPAKAQFETVSQQKYYNMIRAW 302          
BLAST of mRNA_M-pyrifera_M_contig94682.21843.1 vs. uniprot
Match: UPI00101C1DDB (aldo/keto reductase n=1 Tax=Candidatus Chloroploca sp. Khr17 TaxID=2496869 RepID=UPI00101C1DDB)

HSP 1 Score: 82.8 bits (203), Expect = 5.220e-17
Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = 1
Query:    1 VQYSILDQRPGKRMAGLCEERGVKLLCYGTVLGGLLSEKWMGRPQPTRADFTTVSEMK 174
            VQYS++D RP ++MA LC ERGV LL YGT+ GGLLSE+++G P+P+RAD TT S+ K
Sbjct:  178 VQYSLVDLRPSRQMAQLCAERGVGLLAYGTLCGGLLSERYVGAPEPSRADLTTASQRK 235          
BLAST of mRNA_M-pyrifera_M_contig94682.21843.1 vs. uniprot
Match: A0A522XRY1_9ARCH (Aldo/keto reductase n=1 Tax=Candidatus Nitrosotenuis sp. TaxID=2507556 RepID=A0A522XRY1_9ARCH)

HSP 1 Score: 80.9 bits (198), Expect = 2.620e-16
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    1 VQYSILDQRPGKRMAGLCEERGVKLLCYGTVLGGLLSEKWMGRPQPTRADFTTVSEMK 174
             QYS+LDQRPG  MA  C++ G+KLL YGT+LGG LSEK++G P+PTR+D  T S  K
Sbjct:  176 AQYSVLDQRPGVLMAPFCQKHGIKLLTYGTLLGGFLSEKYLGAPEPTRSDLYTFSLQK 233          
BLAST of mRNA_M-pyrifera_M_contig94682.21843.1 vs. uniprot
Match: A0A3M1PPA6_9CYAN (Aldo/keto reductase n=1 Tax=Cyanobacteria bacterium J069 TaxID=2420337 RepID=A0A3M1PPA6_9CYAN)

HSP 1 Score: 80.1 bits (196), Expect = 5.190e-16
Identity = 34/58 (58.62%), Postives = 46/58 (79.31%), Query Frame = 1
Query:    1 VQYSILDQRPGKRMAGLCEERGVKLLCYGTVLGGLLSEKWMGRPQPTRADFTTVSEMK 174
            VQYS++D+RP   MA LC+ERGV LL YGT+ GG LSE+++G+P+P R+D  TVS+ K
Sbjct:  179 VQYSLVDRRPEAYMAKLCQERGVHLLTYGTLCGGFLSERYLGKPEPRRSDLATVSQQK 236          
BLAST of mRNA_M-pyrifera_M_contig94682.21843.1 vs. uniprot
Match: A0A835X930_9ARCH (Aryl-alcohol dehydrogenase-like predicted oxidoreductase n=8 Tax=Thaumarchaeota TaxID=651137 RepID=A0A835X930_9ARCH)

HSP 1 Score: 79.0 bits (193), Expect = 1.330e-15
Identity = 40/81 (49.38%), Postives = 53/81 (65.43%), Query Frame = 1
Query:    1 VQYSILDQRPGKRMAGLCEERGVKLLCYGTVLGGLLSEKWMGRPQPTRADFTTVSEMKVIYSCVCWFS-SLEAVLLVLVDN 240
            VQYSILDQRP  +M   C++  +KLL YGT+LGG LSE ++GRP+P R+D  T+S  K       W   +L   LLV++DN
Sbjct:  175 VQYSILDQRPEVKMVPFCQKHNIKLLTYGTLLGGFLSETYIGRPEPVRSDLNTLSLQKYKNMIDTWGGWNLFQELLVILDN 255          
BLAST of mRNA_M-pyrifera_M_contig94682.21843.1 vs. uniprot
Match: A0A537S9S6_9PROT (Aldo/keto reductase (Fragment) n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537S9S6_9PROT)

HSP 1 Score: 75.9 bits (185), Expect = 2.490e-15
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 1
Query:    1 VQYSILDQRPGKRMAGLCEERGVKLLCYGTVLGGLLSEKWMGRPQPTRADFTTVSEMK 174
            VQYS++D+RP  +MA  C++ G+ LL YGTVLGGLLSEK++GR +P R +  T S  K
Sbjct:   24 VQYSLVDRRPDTKMAAFCQQHGITLLTYGTVLGGLLSEKYLGRAEPGRGELNTASLQK 81          
BLAST of mRNA_M-pyrifera_M_contig94682.21843.1 vs. uniprot
Match: A0A177QVY4_9PLAN (Aldo/keto reductase n=1 Tax=Planctomycetaceae bacterium SCGC AG-212-F19 TaxID=1799658 RepID=A0A177QVY4_9PLAN)

HSP 1 Score: 78.2 bits (191), Expect = 2.650e-15
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 1
Query:    1 VQYSILDQRPGKRMAGLCEERGVKLLCYGTVLGGLLSEKWMGRPQPTRADFTTVSEMKVIYSCVCW 198
            VQYS++DQRP  RM   C++RG+ LL YGTV GGLLSE+++G+P+P R + TT S  K       W
Sbjct:  179 VQYSLIDQRPEVRMVPFCQQRGITLLTYGTVCGGLLSERYLGKPEPGRHELTTASLQKYKQMIDAW 244          
BLAST of mRNA_M-pyrifera_M_contig94682.21843.1 vs. uniprot
Match: A0A0A7V1E6_9ARCH (Aldo/keto reductase n=3 Tax=Thaumarchaeota TaxID=651137 RepID=A0A0A7V1E6_9ARCH)

HSP 1 Score: 77.4 bits (189), Expect = 4.970e-15
Identity = 33/66 (50.00%), Postives = 45/66 (68.18%), Query Frame = 1
Query:    1 VQYSILDQRPGKRMAGLCEERGVKLLCYGTVLGGLLSEKWMGRPQPTRADFTTVSEMKVIYSCVCW 198
            VQYSI+DQRP  +MA  C+   +K+L YGT+LGGLL+EK++G P+PT+ D  T S  K +     W
Sbjct:  177 VQYSIIDQRPNVKMASFCKNHNMKILAYGTLLGGLLTEKYLGGPKPTQTDLDTYSLQKYMNMIDAW 242          
BLAST of mRNA_M-pyrifera_M_contig94682.21843.1 vs. uniprot
Match: A0A370HIK4_9HYPH (Aryl-alcohol dehydrogenase-like predicted oxidoreductase n=1 Tax=Microvirga subterranea TaxID=186651 RepID=A0A370HIK4_9HYPH)

HSP 1 Score: 77.4 bits (189), Expect = 5.420e-15
Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 1
Query:    1 VQYSILDQRPGKRMAGLCEERGVKLLCYGTVLGGLLSEKWMGRPQP 138
            VQYS+LDQRP   +  LC+ERG+KLLCYGTV GG LSE+W+G P+P
Sbjct:  179 VQYSLLDQRPENGLVALCQERGMKLLCYGTVAGGFLSERWLGAPEP 224          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig94682.21843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTT4_ECTSI1.640e-2582.76Aldo/keto reductase n=1 Tax=Ectocarpus siliculosus... [more]
A0A836CKF2_9STRA3.090e-1856.06Aldo/keto reductase n=1 Tax=Tribonema minus TaxID=... [more]
UPI00101C1DDB5.220e-1762.07aldo/keto reductase n=1 Tax=Candidatus Chloroploca... [more]
A0A522XRY1_9ARCH2.620e-1660.34Aldo/keto reductase n=1 Tax=Candidatus Nitrosotenu... [more]
A0A3M1PPA6_9CYAN5.190e-1658.62Aldo/keto reductase n=1 Tax=Cyanobacteria bacteriu... [more]
A0A835X930_9ARCH1.330e-1549.38Aryl-alcohol dehydrogenase-like predicted oxidored... [more]
A0A537S9S6_9PROT2.490e-1555.17Aldo/keto reductase (Fragment) n=2 Tax=Alphaproteo... [more]
A0A177QVY4_9PLAN2.650e-1551.52Aldo/keto reductase n=1 Tax=Planctomycetaceae bact... [more]
A0A0A7V1E6_9ARCH4.970e-1550.00Aldo/keto reductase n=3 Tax=Thaumarchaeota TaxID=6... [more]
A0A370HIK4_9HYPH5.420e-1567.39Aryl-alcohol dehydrogenase-like predicted oxidored... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig94682contigM-pyrifera_M_contig94682:91..330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.5
Seed ortholog evalue1.1e-20
Seed eggNOG ortholog2880.D7FTT4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.oxidoreductase activity
EggNOG OGsCOG0667@1,KOG1575@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816860.1746786-CDS-M-pyrifera_M_contig94682:90..3301622816860.1746786-CDS-M-pyrifera_M_contig94682:90..330Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94682 91..330 -
1692278221.007435-CDS-M-pyrifera_M_contig94682:90..3301692278221.007435-CDS-M-pyrifera_M_contig94682:90..330Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94682 91..330 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig94682.21843.1prot_M-pyrifera_M_contig94682.21843.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig94682 91..330 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig94682.21843.1

>prot_M-pyrifera_M_contig94682.21843.1 ID=prot_M-pyrifera_M_contig94682.21843.1|Name=mRNA_M-pyrifera_M_contig94682.21843.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=80bp
VQYSILDQRPGKRMAGLCEERGVKLLCYGTVLGGLLSEKWMGRPQPTRAD
FTTVSEMKVIYSCVCWFSSLEAVLLVLVDN
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mRNA from alignment at M-pyrifera_M_contig94682:91..330-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig94682.21843.1 ID=mRNA_M-pyrifera_M_contig94682.21843.1|Name=mRNA_M-pyrifera_M_contig94682.21843.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig94682:91..330- (Macrocystis pyrifera P11B4 male)
GTTCAGTACAGCATCCTCGACCAGCGCCCCGGGAAGCGGATGGCGGGGCT GTGCGAAGAGCGGGGAGTGAAGCTCCTCTGCTACGGGACGGTGCTGGGAG GGCTGCTATCGGAGAAGTGGATGGGCCGCCCGCAGCCAACAAGAGCGGAC TTTACCACAGTGTCCGAGATGAAGGTGATATATAGTTGTGTGTGTTGGTT TTCCAGTTTGGAGGCGGTTTTACTTGTTTTGGTAGACAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig94682:91..330-

>mRNA_M-pyrifera_M_contig94682.21843.1 ID=mRNA_M-pyrifera_M_contig94682.21843.1|Name=mRNA_M-pyrifera_M_contig94682.21843.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig94682:91..330- (Macrocystis pyrifera P11B4 male)
GTTCAGTACAGCATCCTCGACCAGCGCCCCGGGAAGCGGATGGCGGGGCT
GTGCGAAGAGCGGGGAGTGAAGCTCCTCTGCTACGGGACGGTGCTGGGAG
GGCTGCTATCGGAGAAGTGGATGGGCCGCCCGCAGCCAACAAGAGCGGAC
TTTACCACAGTGTCCGAGATGAAGGTGATATATAGTTGTGTGTGTTGGTT
TTCCAGTTTGGAGGCGGTTTTACTTGTTTTGGTAGACAACGTTCAGTACA
GCATCCTCGACCAGCGCCCCGGGAAGCGGATGGCGGGGCTGTGCGAAGAG
CGGGGAGTGAAGCTCCTCTGCTACGGGACGGTGCTGGGAGGGCTGCTATC
GGAGAAGTGGATGGGCCGCCCGCAGCCAACAAGAGCGGACTTTACCACAG
TGTCCGAGATGAAGGTGATATATAGTTGTGTGTGTTGGTTTTCCAGTTTG
GAGGCGGTTTTACTTGTTTTGGTAGACAAC
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