mRNA_M-pyrifera_M_contig94626.21832.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig94626.21832.1
Unique NamemRNA_M-pyrifera_M_contig94626.21832.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig94626.21832.1 vs. uniprot
Match: A0A0H5QQE7_9EUKA (PhoLip_ATPase_N domain-containing protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5QQE7_9EUKA)

HSP 1 Score: 157 bits (396), Expect = 5.430e-43
Identity = 83/166 (50.00%), Postives = 120/166 (72.29%), Query Frame = 1
Query:    1 HRLLANTVRTARYTAVTFLFVALWEQLRRAANLYFLLISILQVTTDLSPTNRFSTLIPLIGVLAVSIIKEGVEDWSRHQADRKVNAQVARVA-RGGKWVNVRWDAVRPGDVVLLEADEEAPADMVLFSSSDQSQGLAFVETAALDGETNLKVKRACKPTARVKETA 495
            +R   NTV T++YT + F+   L+EQ RRAAN+YFL+IS+LQV T+LSPT++++T++PL+GV++V++IKE +ED+ RH ADR VN+ + +V  R G  + V W  VR GD++ L   +E   D VL SS    QGLA+VET+ LDGETNLKV+ +C  T+R++  A
Sbjct:  147 NRFCDNTVTTSKYTMLNFVPKCLFEQFRRAANVYFLIISLLQVGTNLSPTSKYATIVPLMGVVSVTMIKEAIEDYQRHLADRAVNSNMTKVVDRNGGLLEVSWRDVRVGDILELTDGDEVCCDGVLLSSCTD-QGLAYVETSCLDGETNLKVRESCHQTSRLRAPA 311          
BLAST of mRNA_M-pyrifera_M_contig94626.21832.1 vs. uniprot
Match: A0A7S3DDP0_9EUKA (Phospholipid-transporting ATPase n=2 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DDP0_9EUKA)

HSP 1 Score: 159 bits (402), Expect = 4.290e-42
Identity = 78/156 (50.00%), Postives = 112/156 (71.79%), Query Frame = 1
Query:   16 NTVRTARYTAVTFLFVALWEQLRRAANLYFLLISILQVTTDLSPTNRFSTLIPLIGVLAVSIIKEGVEDWSRHQADRKVNAQVARVARGGKWVNVRWDAVRPGDVVLLEADEEAPADMVLFSSSDQSQGLAFVETAALDGETNLKVKRACKPTARV 483
            NTV TA+YT V F+F  L+EQ +R AN YFL+IS+LQ+ TD SPT++FST  PL  VLA ++ KE  ED++RH++D +VN + A V R G W  V+W  +  GD+V   ++ E PAD+VL +SS+  QG+ ++ETA LDGETNLK+++A + T+ +
Sbjct:   36 NTVVTAKYTKVNFIFKGLFEQFKRVANCYFLVISLLQIFTDFSPTSKFSTAAPLAAVLAATLTKEAFEDYARHKSDNEVNNRPAHVLRNGAWTEVKWRDIVVGDIVKCISEHEFPADLVLLASSED-QGMCYIETANLDGETNLKIRQALEATSHL 190          
BLAST of mRNA_M-pyrifera_M_contig94626.21832.1 vs. uniprot
Match: UPI00051B1BA3 (phospholipid-transporting ATPase IB-like n=1 Tax=Fulmarus glacialis TaxID=30455 RepID=UPI00051B1BA3)

HSP 1 Score: 144 bits (364), Expect = 5.460e-41
Identity = 71/148 (47.97%), Postives = 104/148 (70.27%), Query Frame = 1
Query:   16 NTVRTARYTAVTFLFVALWEQLRRAANLYFLLISILQVTTDLSPTNRFSTLIPLIGVLAVSIIKEGVEDWSRHQADRKVNAQVARVARGGKWVNVRWDAVRPGDVVLLEADEEAPADMVLFSSSDQSQGLAFVETAALDGETNLKVKR 459
            N V TA+Y+ VTFL   L+EQ+R+AAN +FL I++LQ   D+SPT R++TL+PL+ +L ++ IKE +ED+ RH+AD  VN +   V R G W N+ W  V  GD+V +   +  PADM++ SSS+  Q + ++ETA LDGETNLK+++
Sbjct:   31 NWVSTAKYSVVTFLPRFLYEQIRKAANAFFLFIALLQQIPDVSPTGRYTTLVPLLFILTIAGIKEIIEDYKRHKADSAVNKKKTIVLRNGMWQNIMWKEVAVGDIVKVTNGQHLPADMIILSSSEP-QAMCYIETANLDGETNLKIRQ 177          
BLAST of mRNA_M-pyrifera_M_contig94626.21832.1 vs. uniprot
Match: A0A0G4J8I5_PLABS (Phospholipid-transporting ATPase n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J8I5_PLABS)

HSP 1 Score: 155 bits (392), Expect = 9.610e-41
Identity = 81/160 (50.62%), Postives = 118/160 (73.75%), Query Frame = 1
Query:   16 NTVRTARYTAVTFLFVALWEQLRRAANLYFLLISILQVTTDLSPTNRFSTLIPLIGVLAVSIIKEGVEDWSRHQADRKVNAQVARVA-RGGKWVNVRWDAVRPGDVVLLEADEEAPADMVLFSSSDQSQGLAFVETAALDGETNLKVKRACKPTARVKET 492
            NT+ T++YTA  FL   L+EQ RR AN+YFL+IS+LQV T+LSPT++++T++PL+GV+ V++IKE +ED+ RH AD+ VN   +RV  R G  ++V W  VR GD+V L   +   AD VL SS+   QGL +VET+ALDGETNLK++++C+ T+ ++ T
Sbjct:  123 NTIVTSKYTAWNFLPKCLFEQFRRIANVYFLVISVLQVGTNLSPTSKYATILPLMGVVGVTMIKEAIEDYQRHVADKAVNTNTSRVVDRKGALLDVPWSDVRVGDIVELSDGDGVCADGVLLSSTTD-QGLVYVETSALDGETNLKIRQSCRATSSMRST 281          
BLAST of mRNA_M-pyrifera_M_contig94626.21832.1 vs. uniprot
Match: UPI000528E83D (probable phospholipid-transporting ATPase IA n=1 Tax=Mesitornis unicolor TaxID=54374 RepID=UPI000528E83D)

HSP 1 Score: 146 bits (369), Expect = 9.920e-41
Identity = 74/158 (46.84%), Postives = 108/158 (68.35%), Query Frame = 1
Query:   16 NTVRTARYTAVTFLFVALWEQLRRAANLYFLLISILQVTTDLSPTNRFSTLIPLIGVLAVSIIKEGVEDWSRHQADRKVNAQVARVARGGKWVNVRWDAVRPGDVVLLEADEEAPADMVLFSSSDQSQGLAFVETAALDGETNLKVKRACKPTARVKE 489
            N V TA+Y  +TFL   L+ Q RRAAN +FL I++LQ   D+SPT R++TL+PL+ +LAV+ +KE +ED  RH+AD  VN +  +V R G W  V W+ V  GD+V+++  E  PAD VL SSS+  Q + ++ET+ LDGETNLK+++    T+ +K+
Sbjct:   71 NHVSTAKYNIITFLPRFLYSQFRRAANAFFLFIALLQQIPDVSPTGRYTTLVPLLFILAVAAVKEIIEDVKRHKADNAVNKKQTQVLRNGAWEIVHWEKVDVGDIVIIKGKEYIPADTVLLSSSEP-QAMCYIETSNLDGETNLKIRQGLPLTSEIKD 227          
BLAST of mRNA_M-pyrifera_M_contig94626.21832.1 vs. uniprot
Match: UPI000C204243 (probable phospholipid-transporting ATPase IA isoform X1 n=2 Tax=Onthophagus taurus TaxID=166361 RepID=UPI000C204243)

HSP 1 Score: 154 bits (390), Expect = 1.760e-40
Identity = 76/156 (48.72%), Postives = 116/156 (74.36%), Query Frame = 1
Query:   16 NTVRTARYTAVTFLFVALWEQLRRAANLYFLLISILQVTTDLSPTNRFSTLIPLIGVLAVSIIKEGVEDWSRHQADRKVNAQVARVARGGKWVNVRWDAVRPGDVVLLEADEEAPADMVLFSSSDQSQGLAFVETAALDGETNLKVKRACKPTARV 483
            N V TA+Y+ + FL + L+EQ RR AN++FL+I++LQ   D+SPT R++TL+PL+ +L+VS IKE +EDW RH+AD + N ++  V R G+WVN++W  V  GD+V +  +   PAD++L SSS+  QG++F+ETA LDGETNLK+++A + T+ +
Sbjct:   60 NRVTTAKYSFLRFLPLFLFEQFRRWANIFFLMIALLQQIPDVSPTGRYTTLVPLVFILSVSAIKEIIEDWKRHKADEETNHRMVEVFRDGQWVNLKWMNVGVGDIVKVYNNNFFPADLLLLSSSEP-QGISFIETANLDGETNLKIRQALQVTSNI 214          
BLAST of mRNA_M-pyrifera_M_contig94626.21832.1 vs. uniprot
Match: UPI000529A447 (phospholipid-transporting ATPase IB-like n=1 Tax=Colius striatus TaxID=57412 RepID=UPI000529A447)

HSP 1 Score: 143 bits (360), Expect = 2.780e-40
Identity = 72/150 (48.00%), Postives = 104/150 (69.33%), Query Frame = 1
Query:   28 TARYTAVTFLFVALWEQLRRAANLYFLLISILQVTTDLSPTNRFSTLIPLIGVLAVSIIKEGVEDWSRHQADRKVNAQVARVARGGKWVNVRWDAVRPGDVVLLEADEEAPADMVLFSSSDQSQGLAFVETAALDGETNLKVKRACKPTA 477
            TA+Y+ VTFL   L+EQ+R+AAN +FL I++LQ   D+SPT R++TL+PL+ +L V+ IKE +ED+ RH+AD  VN +   V R G W N+ W  V  GD+V +   +  PADM++ SSS+  Q + ++ETA LDGETNLK+++    TA
Sbjct:    1 TAKYSVVTFLPRFLYEQIRKAANAFFLFIALLQQIPDVSPTGRYTTLVPLLFILTVAGIKEIIEDYKRHKADSAVNKKKTIVLRNGMWQNIMWKEVAVGDIVKVTNGQHLPADMIIISSSEP-QAMCYIETANLDGETNLKIRQGLSQTA 149          
BLAST of mRNA_M-pyrifera_M_contig94626.21832.1 vs. uniprot
Match: A0A1A6G046_NEOLE (PhoLip_ATPase_N domain-containing protein (Fragment) n=1 Tax=Neotoma lepida TaxID=56216 RepID=A0A1A6G046_NEOLE)

HSP 1 Score: 150 bits (378), Expect = 3.220e-40
Identity = 79/151 (52.32%), Postives = 107/151 (70.86%), Query Frame = 1
Query:   28 TARYTAVTFLFVALWEQLRRAANLYFLLISILQVTTDLSPTNRFSTLIPLIGVLAVSIIKEGVEDWSRHQADRKVNAQVARVARGGKWVNVRWDAVRPGDVVLLEADEEAPADMVLFSSSDQSQGLAFVETAALDGETNLKVKRACKPTAR 480
            TA+Y+ +TFL   L+EQ+RRAAN +FL I++LQ   D+SPT R++TL+PLI +L ++ IKE VED+ RH+AD  VN +   V R G W  + W  V  GD+V +   +  PADMVLFSSS+  QG+ +VETA LDGETNLK+++ C P AR
Sbjct:    1 TAKYSVLTFLPRFLYEQIRRAANAFFLFIALLQQIPDVSPTGRYTTLVPLIIILTIAGIKEIVEDFKRHKADSAVNKKKTIVLRNGMWHTIMWKEVAVGDIVKVLNGQYLPADMVLFSSSEP-QGMCYVETANLDGETNLKIRQLCCPRAR 150          
BLAST of mRNA_M-pyrifera_M_contig94626.21832.1 vs. uniprot
Match: A0A8K0C910_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0C910_9COLE)

HSP 1 Score: 152 bits (385), Expect = 8.290e-40
Identity = 80/164 (48.78%), Postives = 118/164 (71.95%), Query Frame = 1
Query:    1 HRLLANTVRTARYTAVTFLFVALWEQLRRAANLYFLLISILQVTTDLSPTNRFSTLIPLIGVLAVSIIKEGVEDWSRHQADRKVNAQVARVARGGKWVNVRWDAVRPGDVVLLEADEEAPADMVLFSSSDQSQGLAFVETAALDGETNLKVKRACKPTARVKET 492
            H+ + N + TA+Y+ + F+ + L+EQ RR AN++FLLI++LQ   D+SPT R++TL+PLI +L+VS IKE +ED  RH+AD + N +   V R   W+ VRW  V  GD+V ++ ++  PAD+VL SSS+  QG++F+ETA LDGETNLKV+RA + TA++  T
Sbjct:   60 HKFVNNRISTAKYSVLRFVPLFLFEQFRRWANIFFLLIALLQQIPDVSPTGRYTTLVPLIFILSVSAIKEIIEDIKRHRADDETNHRTIEVFREDMWIRVRWLNVIVGDIVKVQNNDFFPADLVLLSSSEP-QGMSFIETANLDGETNLKVRRALQCTAKLTTT 222          
BLAST of mRNA_M-pyrifera_M_contig94626.21832.1 vs. uniprot
Match: A0A0K8U0E8_BACLA (Putative phospholipid-transporting ATPase IA (Fragment) n=18 Tax=Tephritidae TaxID=7211 RepID=A0A0K8U0E8_BACLA)

HSP 1 Score: 142 bits (358), Expect = 8.870e-40
Identity = 74/155 (47.74%), Postives = 109/155 (70.32%), Query Frame = 1
Query:   16 NTVRTARYTAVTFLFVALWEQLRRAANLYFLLISILQVTTDLSPTNRFSTLIPLIGVLAVSIIKEGVEDWSRHQADRKVNAQVARVARGGKWVNVRWDAVRPGDVVLLEADEEAPADMVLFSSSDQSQGLAFVETAALDGETNLKVKRACKPTAR 480
            N + TA+Y+ ++FL   L+EQ RR +N +FLLI++LQ   D+SPT R++TL+PLI +L+VS IKE VED  RH+AD ++N ++  V R G W +VRW  +  GD+V +  +   PAD++L SSS+  Q + F+ETA LDGETNLK+++    TA+
Sbjct:   48 NHISTAKYSFISFLPSFLFEQFRRYSNCFFLLIALLQQIPDVSPTGRYTTLVPLIFILSVSGIKEIVEDIKRHRADNEINHRMVEVLRDGAWTSVRWRDIGVGDIVKIPNNIFFPADILLLSSSEP-QAMCFIETANLDGETNLKIRQGVPATAK 201          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig94626.21832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0H5QQE7_9EUKA5.430e-4350.00PhoLip_ATPase_N domain-containing protein (Fragmen... [more]
A0A7S3DDP0_9EUKA4.290e-4250.00Phospholipid-transporting ATPase n=2 Tax=Palpitomo... [more]
UPI00051B1BA35.460e-4147.97phospholipid-transporting ATPase IB-like n=1 Tax=F... [more]
A0A0G4J8I5_PLABS9.610e-4150.63Phospholipid-transporting ATPase n=1 Tax=Plasmodio... [more]
UPI000528E83D9.920e-4146.84probable phospholipid-transporting ATPase IA n=1 T... [more]
UPI000C2042431.760e-4048.72probable phospholipid-transporting ATPase IA isofo... [more]
UPI000529A4472.780e-4048.00phospholipid-transporting ATPase IB-like n=1 Tax=C... [more]
A0A1A6G046_NEOLE3.220e-4052.32PhoLip_ATPase_N domain-containing protein (Fragmen... [more]
A0A8K0C910_9COLE8.290e-4048.78Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]
A0A0K8U0E8_BACLA8.870e-4047.74Putative phospholipid-transporting ATPase IA (Frag... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig94626contigM-pyrifera_M_contig94626:239..733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeNematoda
Seed ortholog score148.7
Seed ortholog evalue2.4e-33
Seed eggNOG ortholog6334.EFV50629
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily
EggNOG OGs38BZ2@33154,3BDVG@33208,3CTIG@33213,40B8B@6231,COG0474@1,KOG0206@2759
COG Functional cat.P
Best tax levelNematoda
Best eggNOG OGNA|NA|NA
Exons1
Model size495
Cds size495
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816859.795523-CDS-M-pyrifera_M_contig94626:238..7331622816859.795523-CDS-M-pyrifera_M_contig94626:238..733Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94626 239..733 +
1692278220.8540723-CDS-M-pyrifera_M_contig94626:238..7331692278220.8540723-CDS-M-pyrifera_M_contig94626:238..733Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94626 239..733 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig94626.21832.1prot_M-pyrifera_M_contig94626.21832.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig94626 239..733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig94626.21832.1

>prot_M-pyrifera_M_contig94626.21832.1 ID=prot_M-pyrifera_M_contig94626.21832.1|Name=mRNA_M-pyrifera_M_contig94626.21832.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=165bp
HRLLANTVRTARYTAVTFLFVALWEQLRRAANLYFLLISILQVTTDLSPT
NRFSTLIPLIGVLAVSIIKEGVEDWSRHQADRKVNAQVARVARGGKWVNV
RWDAVRPGDVVLLEADEEAPADMVLFSSSDQSQGLAFVETAALDGETNLK
VKRACKPTARVKETA
back to top

mRNA from alignment at M-pyrifera_M_contig94626:239..733+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig94626.21832.1 ID=mRNA_M-pyrifera_M_contig94626.21832.1|Name=mRNA_M-pyrifera_M_contig94626.21832.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=495bp|location=Sequence derived from alignment at M-pyrifera_M_contig94626:239..733+ (Macrocystis pyrifera P11B4 male)
CACAGATTACTTGCAAACACGGTGCGCACGGCACGGTACACTGCAGTGAC CTTCTTGTTCGTAGCTCTGTGGGAGCAGCTGAGAAGGGCGGCCAATCTGT ACTTCCTGCTCATCTCCATCCTTCAGGTGACCACAGACCTGTCCCCTACC AACCGGTTTTCGACACTCATTCCATTAATTGGCGTGTTGGCAGTGTCAAT CATCAAGGAGGGCGTGGAGGACTGGTCGCGTCATCAGGCAGACCGCAAAG TGAATGCGCAGGTGGCAAGGGTTGCTCGAGGTGGCAAATGGGTGAATGTA CGCTGGGATGCAGTGCGCCCAGGCGACGTTGTGCTGCTGGAAGCGGACGA GGAGGCTCCCGCTGATATGGTGTTGTTTTCAAGCTCAGATCAGAGCCAAG GACTGGCTTTTGTGGAGACGGCTGCTCTGGATGGAGAGACCAACCTCAAG GTGAAGCGAGCATGCAAGCCCACTGCCCGAGTAAAGGAAACTGCC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig94626:239..733+

>mRNA_M-pyrifera_M_contig94626.21832.1 ID=mRNA_M-pyrifera_M_contig94626.21832.1|Name=mRNA_M-pyrifera_M_contig94626.21832.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=990bp|location=Sequence derived from alignment at M-pyrifera_M_contig94626:239..733+ (Macrocystis pyrifera P11B4 male)
CACAGATTACTTGCAAACACGGTGCGCACGGCACGGTACACTGCAGTGAC
CTTCTTGTTCGTAGCTCTGTGGGAGCAGCTGAGAAGGGCGGCCAATCTGT
ACTTCCTGCTCATCTCCATCCTTCAGGTGACCACAGACCTGTCCCCTACC
AACCGGTTTTCGACACTCATTCCATTAATTGGCGTGTTGGCAGTGTCAAT
CATCAAGGAGGGCGTGGAGGACTGGTCGCGTCATCAGGCAGACCGCAAAG
TGAATGCGCAGGTGGCAAGGGTTGCTCGAGGTGGCAAATGGGTGAATGTA
CGCTGGGATGCAGTGCGCCCAGGCGACGTTGTGCTGCTGGAAGCGGACGA
GGAGGCTCCCGCTGATATGGTGTTGTTTTCAAGCTCAGATCAGAGCCAAG
GACTGGCTTTTGTGGAGACGGCTGCTCTGGATGGAGAGACCAACCTCAAG
GTGAAGCGAGCATGCAAGCCCACTGCCCGAGTAAAGGAAACTGCCCACAG
ATTACTTGCAAACACGGTGCGCACGGCACGGTACACTGCAGTGACCTTCT
TGTTCGTAGCTCTGTGGGAGCAGCTGAGAAGGGCGGCCAATCTGTACTTC
CTGCTCATCTCCATCCTTCAGGTGACCACAGACCTGTCCCCTACCAACCG
GTTTTCGACACTCATTCCATTAATTGGCGTGTTGGCAGTGTCAATCATCA
AGGAGGGCGTGGAGGACTGGTCGCGTCATCAGGCAGACCGCAAAGTGAAT
GCGCAGGTGGCAAGGGTTGCTCGAGGTGGCAAATGGGTGAATGTACGCTG
GGATGCAGTGCGCCCAGGCGACGTTGTGCTGCTGGAAGCGGACGAGGAGG
CTCCCGCTGATATGGTGTTGTTTTCAAGCTCAGATCAGAGCCAAGGACTG
GCTTTTGTGGAGACGGCTGCTCTGGATGGAGAGACCAACCTCAAGGTGAA
GCGAGCATGCAAGCCCACTGCCCGAGTAAAGGAAACTGCC
back to top