mRNA_M-pyrifera_M_contig94607.21827.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig94607.21827.1
Unique NamemRNA_M-pyrifera_M_contig94607.21827.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig94607.21827.1 vs. uniprot
Match: UPI0010BD6A76 (syntaxin-binding protein 5 n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI0010BD6A76)

HSP 1 Score: 66.6 bits (161), Expect = 1.540e-11
Identity = 27/50 (54.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 RPKMFNLRATLHHGVPGNPVAMAFDPVQRLLAVGTQQGLVKVFGKPGVEV 150
            R ++FN+  T  HG P NP A+A+DP+QRL+A+GT  G +K+ G+PGVEV
Sbjct:   46 RKELFNVAKTSRHGFPHNPSAVAYDPIQRLIAIGTHNGSIKILGRPGVEV 95
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BLAST of mRNA_M-pyrifera_M_contig94607.21827.1 vs. uniprot
Match: A0A6J0B4M3_NEOLC (syntaxin-binding protein 5 isoform X4 n=2 Tax=Neodiprion lecontei TaxID=441921 RepID=A0A6J0B4M3_NEOLC)

HSP 1 Score: 66.2 bits (160), Expect = 2.100e-11
Identity = 27/50 (54.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 RPKMFNLRATLHHGVPGNPVAMAFDPVQRLLAVGTQQGLVKVFGKPGVEV 150
            RP  FN++ T  HG P  P A+AFDP+QRLLA+GT+ G +++ G+PGV+V
Sbjct:   32 RPDHFNVKKTFRHGFPFQPTAIAFDPIQRLLAIGTKTGSLRILGRPGVDV 81
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BLAST of mRNA_M-pyrifera_M_contig94607.21827.1 vs. uniprot
Match: A0A6J0B744_NEOLC (syntaxin-binding protein 5 isoform X1 n=29 Tax=Diprioninae TaxID=410274 RepID=A0A6J0B744_NEOLC)

HSP 1 Score: 66.2 bits (160), Expect = 2.100e-11
Identity = 27/50 (54.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 RPKMFNLRATLHHGVPGNPVAMAFDPVQRLLAVGTQQGLVKVFGKPGVEV 150
            RP  FN++ T  HG P  P A+AFDP+QRLLA+GT+ G +++ G+PGV+V
Sbjct:   32 RPDHFNVKKTFRHGFPFQPTAIAFDPIQRLLAIGTKTGSLRILGRPGVDV 81
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BLAST of mRNA_M-pyrifera_M_contig94607.21827.1 vs. uniprot
Match: UPI0017471739 (syntaxin-binding protein 5 isoform X5 n=2 Tax=Monomorium pharaonis TaxID=307658 RepID=UPI0017471739)

HSP 1 Score: 66.2 bits (160), Expect = 2.100e-11
Identity = 27/50 (54.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 RPKMFNLRATLHHGVPGNPVAMAFDPVQRLLAVGTQQGLVKVFGKPGVEV 150
            RP+ F ++ T  HG P  P A+AFDPVQRLLA+GT+ G +++ G+PGV+V
Sbjct:   32 RPEHFQVKKTFRHGFPHQPTALAFDPVQRLLAIGTKSGSLRILGRPGVDV 81
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BLAST of mRNA_M-pyrifera_M_contig94607.21827.1 vs. uniprot
Match: UPI000625657C (syntaxin-binding protein 5 isoform X1 n=5 Tax=Athalia rosae TaxID=37344 RepID=UPI000625657C)

HSP 1 Score: 66.2 bits (160), Expect = 2.100e-11
Identity = 27/50 (54.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 RPKMFNLRATLHHGVPGNPVAMAFDPVQRLLAVGTQQGLVKVFGKPGVEV 150
            RP  FN++ T  HG P  P A+AFDP+QRLLA+GT+ G +++ G+PGV+V
Sbjct:   32 RPDHFNVKKTFRHGFPFQPTAIAFDPIQRLLAIGTKTGSLRILGRPGVDV 81
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BLAST of mRNA_M-pyrifera_M_contig94607.21827.1 vs. uniprot
Match: A0A8J5AMZ0_9DIPT (Uncharacterized protein n=1 Tax=Bradysia odoriphaga TaxID=1564500 RepID=A0A8J5AMZ0_9DIPT)

HSP 1 Score: 62.4 bits (150), Expect = 2.410e-11
Identity = 24/47 (51.06%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    7 KMFNLRATLHHGVPGNPVAMAFDPVQRLLAVGTQQGLVKVFGKPGVE 147
            ++F  R T+ HG P  P A+A+DP  +L+A+GTQ G +K+FG+PGVE
Sbjct:   22 ELFAFRKTVQHGFPHKPTALAYDPKDKLMAIGTQSGAIKIFGRPGVE 68
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BLAST of mRNA_M-pyrifera_M_contig94607.21827.1 vs. uniprot
Match: A0A7F5R274_AGRPL (syntaxin-binding protein 5 n=1 Tax=Agrilus planipennis TaxID=224129 RepID=A0A7F5R274_AGRPL)

HSP 1 Score: 65.9 bits (159), Expect = 2.870e-11
Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 RPKMFNLRATLHHGVPGNPVAMAFDPVQRLLAVGTQQGLVKVFGKPGVEV 150
            RP+ F ++ T  HG P  P AMAFDPVQRLLA+GT+ G +++ G+PGV+V
Sbjct:   32 RPEHFQVKRTFRHGFPFQPTAMAFDPVQRLLAIGTKGGSLRILGQPGVDV 81
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BLAST of mRNA_M-pyrifera_M_contig94607.21827.1 vs. uniprot
Match: A0A7R8D729_LEPSM (STXBP5 n=1 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A7R8D729_LEPSM)

HSP 1 Score: 63.5 bits (153), Expect = 2.900e-11
Identity = 24/48 (50.00%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    4 PKMFNLRATLHHGVPGNPVAMAFDPVQRLLAVGTQQGLVKVFGKPGVE 147
            P+ F L+ TL HG P  P++MA+D VQ+L+A+G + G+VK++GKPG++
Sbjct:   48 PEQFTLQPTLRHGFPFKPLSMAYDSVQKLMAIGNRSGVVKIYGKPGID 95
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BLAST of mRNA_M-pyrifera_M_contig94607.21827.1 vs. uniprot
Match: UPI0006D8FA1A (syntaxin-binding protein 5-like n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=UPI0006D8FA1A)

HSP 1 Score: 62.0 bits (149), Expect = 4.120e-11
Identity = 27/45 (60.00%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:   13 FNLRATLHHGVPGNPVAMAFDPVQRLLAVGTQQGLVKVFGKPGVE 147
            F L  T+ HG P  P AMAFDPVQ++LA+GTQ G +++FG+PGVE
Sbjct:   44 FQLCKTVRHGFPYQPSAMAFDPVQKILAIGTQIGALRLFGRPGVE 88
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BLAST of mRNA_M-pyrifera_M_contig94607.21827.1 vs. uniprot
Match: L7LZ29_RHIPC (V-SNARE coiled-coil homology domain-containing protein n=37 Tax=Ixodidae TaxID=6939 RepID=L7LZ29_RHIPC)

HSP 1 Score: 65.1 bits (157), Expect = 5.360e-11
Identity = 26/49 (53.06%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 RPKMFNLRATLHHGVPGNPVAMAFDPVQRLLAVGTQQGLVKVFGKPGVE 147
            RP+ F +  T+ HG P  P A+AFDPVQR+LA+GT+ G +++FG+PGV+
Sbjct:   38 RPEHFKVSRTIRHGFPFQPTALAFDPVQRILAIGTKNGSLRLFGRPGVD 86
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig94607.21827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0010BD6A761.540e-1154.00syntaxin-binding protein 5 n=1 Tax=Galendromus occ... [more]
A0A6J0B4M3_NEOLC2.100e-1154.00syntaxin-binding protein 5 isoform X4 n=2 Tax=Neod... [more]
A0A6J0B744_NEOLC2.100e-1154.00syntaxin-binding protein 5 isoform X1 n=29 Tax=Dip... [more]
UPI00174717392.100e-1154.00syntaxin-binding protein 5 isoform X5 n=2 Tax=Mono... [more]
UPI000625657C2.100e-1154.00syntaxin-binding protein 5 isoform X1 n=5 Tax=Atha... [more]
A0A8J5AMZ0_9DIPT2.410e-1151.06Uncharacterized protein n=1 Tax=Bradysia odoriphag... [more]
A0A7F5R274_AGRPL2.870e-1156.00syntaxin-binding protein 5 n=1 Tax=Agrilus planipe... [more]
A0A7R8D729_LEPSM2.900e-1150.00STXBP5 n=1 Tax=Lepeophtheirus salmonis TaxID=72036... [more]
UPI0006D8FA1A4.120e-1160.00syntaxin-binding protein 5-like n=1 Tax=Latimeria ... [more]
L7LZ29_RHIPC5.360e-1153.06V-SNARE coiled-coil homology domain-containing pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig94607contigM-pyrifera_M_contig94607:22..174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score64.3
Seed ortholog evalue1.8e-08
Seed eggNOG ortholog7370.XP_005180338.1
Preferred namel(2)gl
KEGG koko:K06094
KEGG Pathwayko04390,ko04391,ko04530,ko05165,map04390,map04391,map04530,map05165
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000132,GO:0000149,GO:0000226,GO:0000278,GO:0000578,GO:0001505,GO:0001700,GO:0001709,GO:0001738,GO:0001932,GO:0001933,GO:0002009,GO:0002164,GO:0002165,GO:0002168,GO:0002791,GO:0003002,GO:0003006,GO:0003674,GO:0004857,GO:0004860,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005918,GO:0005920,GO:0005938,GO:0006469,GO:0006810,GO:0006836,GO:0006887,GO:0006996,GO:0007010,GO:0007017,GO:0007043,GO:0007049,GO:0007154,GO:0007163,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0007179,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007308,GO:0007309,GO:0007314,GO:0007350,GO:0007351,GO:0007389,GO:0007391,GO:0007399,GO:0007405,GO:0007406,GO:0007423,GO:0007431,GO:0007435,GO:0007444,GO:0007552,GO:0007560,GO:0007591,GO:0008021,GO:0008047,GO:0008092,GO:0008104,GO:0008150,GO:0008219,GO:0008283,GO:0008285,GO:0008356,GO:0008358,GO:0008360,GO:0008363,GO:0008544,GO:0008593,GO:0008595,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009791,GO:0009792,GO:0009798,GO:0009880,GO:0009886,GO:0009887,GO:0009888,GO:0009892,GO:0009948,GO:0009952,GO:0009966,GO:0009968,GO:0009987,GO:0009994,GO:0010033,GO:0010563,GO:0010605,GO:0010623,GO:0010646,GO:0010648,GO:0010721,GO:0010941,GO:0010942,GO:0012501,GO:0012502,GO:0012505,GO:0014070,GO:0016020,GO:0016043,GO:0016079,GO:0016082,GO:0016192,GO:0016323,GO:0016325,GO:0016327,GO:0016331,GO:0016332,GO:0016333,GO:0016334,GO:0016335,GO:0016336,GO:0017016,GO:0017022,GO:0017137,GO:0017145,GO:0017156,GO:0017157,GO:0019207,GO:0019210,GO:0019220,GO:0019222,GO:0019887,GO:0019899,GO:0019905,GO:0019953,GO:0019991,GO:0021700,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0022612,GO:0023051,GO:0023052,GO:0023057,GO:0023061,GO:0030010,GO:0030029,GO:0030036,GO:0030054,GO:0030133,GO:0030154,GO:0030234,GO:0030695,GO:0030863,GO:0030951,GO:0030952,GO:0031012,GO:0031267,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0031410,GO:0031982,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032880,GO:0032940,GO:0033036,GO:0033673,GO:0033993,GO:0034329,GO:0034330,GO:0034613,GO:0034622,GO:0035017,GO:0035070,GO:0035071,GO:0035072,GO:0035075,GO:0035078,GO:0035081,GO:0035088,GO:0035212,GO:0035239,GO:0035272,GO:0035282,GO:0035293,GO:0035295,GO:0036314,GO:0036445,GO:0040001,GO:0040003,GO:0040008,GO:0042127,GO:0042221,GO:0042303,GO:0042325,GO:0042326,GO:0042335,GO:0042337,GO:0043067,GO:0043068,GO:0043085,GO:0043086,GO:0043087,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043296,GO:0043297,GO:0043547,GO:0043549,GO:0043933,GO:0044085,GO:0044092,GO:0044093,GO:0044421,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044456,GO:0044459,GO:0044464,GO:0044703,GO:0045055,GO:0045159,GO:0045165,GO:0045167,GO:0045175,GO:0045176,GO:0045184,GO:0045196,GO:0045197,GO:0045200,GO:0045202,GO:0045216,GO:0045595,GO:0045596,GO:0045746,GO:0045859,GO:0045936,GO:0046903,GO:0046907,GO:0048102,GO:0048103,GO:0048468,GO:0048469,GO:0048477,GO:0048489,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048563,GO:0048569,GO:0048583,GO:0048585,GO:0048598,GO:0048599,GO:0048609,GO:0048699,GO:0048707,GO:0048729,GO:0048730,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050708,GO:0050767,GO:0050768,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051020,GO:0051046,GO:0051049,GO:0051093,GO:0051128,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051223,GO:0051234,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051293,GO:0051294,GO:0051301,GO:0051336,GO:0051338,GO:0051345,GO:0051348,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051653,GO:0051656,GO:0051668,GO:0051704,GO:0051716,GO:0051726,GO:0051960,GO:0051961,GO:0055057,GO:0055059,GO:0060033,GO:0060255,GO:0060284,GO:0060429,GO:0060562,GO:0060589,GO:0060627,GO:0061245,GO:0061351,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070160,GO:0070201,GO:0070382,GO:0070727,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071559,GO:0071560,GO:0071840,GO:0071944,GO:0072089,GO:0072091,GO:0072697,GO:0080090,GO:0090087,GO:0090162,GO:0090163,GO:0097305,GO:0097458,GO:0097479,GO:0097480,GO:0097708,GO:0098590,GO:0098722,GO:0098725,GO:0098772,GO:0098793,GO:0098916,GO:0099003,GO:0099503,GO:0099504,GO:0099536,GO:0099537,GO:0099568,GO:0099643,GO:0140029,GO:1901654,GO:1901700,GO:1902692,GO:1902850,GO:1903047,GO:1903530,GO:1990778,GO:2000026,GO:2000177,GO:2000178,GO:2000647
EggNOG free text desc.Essential for the development of polarized epithelia, for cell polarity associated with asymmetric cell division of neuroblasts during development, and for oocyte polarity formation. Promotes the formation of actin-rich projections at the oocyte cortex and the posterior enrichment of par-1 which is required for oocyte polarization. Regulates the localization of axis-specifying morphogens such as stau and grk
EggNOG OGs38DTG@33154,3BC7M@33208,3CVIR@33213,3SJFV@50557,41V04@6656,450GK@7147,KOG1983@1,KOG1983@2759
COG Functional cat.U
Best tax levelDiptera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size153
Cds size144
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816859.59887-CDS-M-pyrifera_M_contig94607:21..1651622816859.59887-CDS-M-pyrifera_M_contig94607:21..165Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94607 22..165 -
1692278220.7463634-CDS-M-pyrifera_M_contig94607:21..1651692278220.7463634-CDS-M-pyrifera_M_contig94607:21..165Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94607 22..165 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816859.6110387-UTR-M-pyrifera_M_contig94607:165..1741622816859.6110387-UTR-M-pyrifera_M_contig94607:165..174Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig94607 166..174 -
1692278220.7588882-UTR-M-pyrifera_M_contig94607:165..1741692278220.7588882-UTR-M-pyrifera_M_contig94607:165..174Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig94607 166..174 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig94607.21827.1prot_M-pyrifera_M_contig94607.21827.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig94607 22..165 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig94607.21827.1

>prot_M-pyrifera_M_contig94607.21827.1 ID=prot_M-pyrifera_M_contig94607.21827.1|Name=mRNA_M-pyrifera_M_contig94607.21827.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=48bp
MFNLRATLHHGVPGNPVAMAFDPVQRLLAVGTQQGLVKVFGKPGVEVL
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mRNA from alignment at M-pyrifera_M_contig94607:22..174-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig94607.21827.1 ID=mRNA_M-pyrifera_M_contig94607.21827.1|Name=mRNA_M-pyrifera_M_contig94607.21827.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=153bp|location=Sequence derived from alignment at M-pyrifera_M_contig94607:22..174- (Macrocystis pyrifera P11B4 male)
CGGCCGAAGATGTTCAACCTGCGTGCTACACTACACCACGGCGTGCCCGG
CAACCCCGTGGCCATGGCCTTCGACCCCGTGCAGCGCCTGCTGGCCGTGG
GCACGCAGCAGGGCCTCGTAAAGGTGTTCGGCAAGCCCGGCGTGGAGGTG
TTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig94607:22..174-

>mRNA_M-pyrifera_M_contig94607.21827.1 ID=mRNA_M-pyrifera_M_contig94607.21827.1|Name=mRNA_M-pyrifera_M_contig94607.21827.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=288bp|location=Sequence derived from alignment at M-pyrifera_M_contig94607:22..174- (Macrocystis pyrifera P11B4 male)
ATGTTCAACCTGCGTGCTACACTACACCACGGCGTGCCCGGCAACCCCGT
GGCCATGGCCTTCGACCCCGTGCAGCGCCTGCTGGCCGTGGGCACGCAGC
AGGGCCTCGTAAAGGTGTTCGGCAAGCCCGGCGTGGAGGTGTTGATGTTC
AACCTGCGTGCTACACTACACCACGGCGTGCCCGGCAACCCCGTGGCCAT
GGCCTTCGACCCCGTGCAGCGCCTGCTGGCCGTGGGCACGCAGCAGGGCC
TCGTAAAGGTGTTCGGCAAGCCCGGCGTGGAGGTGTTG
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