mRNA_M-pyrifera_M_contig9457.21822.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9457.21822.1
Unique NamemRNA_M-pyrifera_M_contig9457.21822.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9457.21822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9457contigM-pyrifera_M_contig9457:7612..9534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size249
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816859.0914876-CDS-M-pyrifera_M_contig9457:7612..77561622816859.0914876-CDS-M-pyrifera_M_contig9457:7612..7756Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9457 7613..7756 -
1692278220.2892551-CDS-M-pyrifera_M_contig9457:7612..77561692278220.2892551-CDS-M-pyrifera_M_contig9457:7612..7756Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9457 7613..7756 -
1622816859.1029391-CDS-M-pyrifera_M_contig9457:9432..95341622816859.1029391-CDS-M-pyrifera_M_contig9457:9432..9534Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9457 9433..9534 -
1692278220.2993152-CDS-M-pyrifera_M_contig9457:9432..95341692278220.2993152-CDS-M-pyrifera_M_contig9457:9432..9534Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9457 9433..9534 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9457.21822.1prot_M-pyrifera_M_contig9457.21822.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9457 7613..9534 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9457.21822.1

>prot_M-pyrifera_M_contig9457.21822.1 ID=prot_M-pyrifera_M_contig9457.21822.1|Name=mRNA_M-pyrifera_M_contig9457.21822.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=82bp
VVRRQKAIVEKEEVTREKAKAADERKRKALAKKKAEQEDRKRKLEQEANA
ASQNLAGASVPGADGVVEIGKDGAFDVDQTPM
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mRNA from alignment at M-pyrifera_M_contig9457:7612..9534-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9457.21822.1 ID=mRNA_M-pyrifera_M_contig9457.21822.1|Name=mRNA_M-pyrifera_M_contig9457.21822.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1923bp|location=Sequence derived from alignment at M-pyrifera_M_contig9457:7612..9534- (Macrocystis pyrifera P11B4 male)
GTGGTGCGTCGCCAAAAAGCGATCGTGGAAAAGGAAGAGGTGACGAGGGA
GAAGGCCAAAGCGGCGGATGAGCGCAAGCGCAAGGCCTTGGCAAAGAAGA
AGGTGAAAGGAGTTTCGATCGTGCGTACCGGCGTTTTGGCTGCACCTATC
GTTCGTTTTGGGGACTAACTACTCGTAATTAGACGAGGATCGTTTTACAT
GCAGACGGAAAAGCGCAAGGCCCTCGCAAAGGTTAGAGGTACTTCGATGG
TGCATCCGGCGTTAAAGCTGCCCCTAGTGTTCGTTTCAGGGATAAGCTGC
TTGGAATTCGGGTGAAATGGTTTTAAAAGCGAGCCCGAAAGCGCTCATGG
CCTTGGCAAAGAAGGTGCGAGGGGTTTGATGGTGCATACCGGCGTTTGTT
AGCCGCTTGAGAGCTACAGTAGCTGCACCTATTATTACGGGGGGCCATAG
TAAATAGGACATGCGGTACACAGAAAAACCTTTATATTTACCTATTTTTA
CTAACAATATTTGGTCTTATTTAATATGGTCCCCCGTAATACTAACAATA
TTTGGTCACCCATAGTAAATAGGACCAAATATTGTTAGCAAAATAGGTAA
ATATATAGGTTTTTATGTATGTCATAGGTCCTATTAACTATGGACCCCCA
TAATAGTACGTTGGCATGTTGTACCCCATTCTTCCCGCGGGTGTGAACAT
GGGTGAACACGGGTAGAATCTTGGGCAAGTATCATATAGGTATTTGGCGC
TATACCAAAGGCTACCCGACTAATCGAGTATATTTGTGGAAGTATCATAC
CGGTACTACGCCAATACTACGAAAAGTAGGGTGTTGGGGGGGCGATGTTA
CACTCATGTTGCCGGTATGCTCCAGCCAACAATACCGGCACTATGGCGGT
AACCGGCACTATCTTCTCTGCGCACTACCGCGCTAGTGGTGAATCCCATT
TGTGCCAAGCGATTCCACAAGCACTACAGCGGGCGACCGGCAATATAGAG
GGACCACTAGTGTAGGTGAACATTACCTGGTGGTGGCTTATACCCGAGTA
GGTTTCCCGGGTAATATTACGGGGGACCATAGTTAATAGGACCTACGGTA
GACACAAACATCCATATATTTCCATATTTTTACTAACCGTATTTGGTCCT
ATTTACTGTGGCCCCCCGTTATACCAAACACACATTTAAAAGCATTGAGA
TATGCGTACATACATGACTGCAAACCCTAACTCTATCCCCGGCGCCCCGG
GAAGTTTCTCGGAATGTTCTAGAATGCATTGAGGAGTTAGGGTGGGGTAC
CGACCATTTTGTCGAAGCTGGGCCAAGTCGCAAACACTGCGAGTACACAC
CTCGCGAACAGATCGTCGTATCCCACTCTATGATCTAGATCTTTCGAGGC
AGATCTGTTGTCGGTCTTGTATTATCTACAGTAGCTCGTGTTGGCGGGTG
GGTCCCGTATTATTTGCATGATCTATGATACCAAGGCGTGTTTCCTGGGT
TGGGTGTGATCTATCTGCCCTATAAGGCAGATCCTGCACAAACACCGTCA
CAACGGCAGCTGAGGAGCTAGATCATCTATCTGTAGACAGATCAGATAGA
TCATCAGCTGCCCGCGGTGGGAAACATTCCCCACTCTGGACAAAAATGCA
AGGACCGTTGGGTCGTATATATAAGTACCAAATGCCCCTTGCATTTGCGC
CCCGAAGCTGGTGCTACTCAAGCCGCCCCTCAAGCCGTCCATGACCGACC
CTGTTTCCCTCCCGTTCCAATGATCCAGGCCGAGCAAGAAGACCGAAAGA
GAAAGCTAGAGCAGGAGGCTAACGCCGCCTCACAAAACCTCGCGGGGGCA
AGTGTTCCGGGGGCCGACGGAGTTGTGGAGATTGGGAAGGATGGAGCGTT
CGACGTCGACCAGACACCAATGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9457:7612..9534-

>mRNA_M-pyrifera_M_contig9457.21822.1 ID=mRNA_M-pyrifera_M_contig9457.21822.1|Name=mRNA_M-pyrifera_M_contig9457.21822.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig9457:7612..9534- (Macrocystis pyrifera P11B4 male)
GTGGTGCGTCGCCAAAAAGCGATCGTGGAAAAGGAAGAGGTGACGAGGGA
GAAGGCCAAAGCGGCGGATGAGCGCAAGCGCAAGGCCTTGGCAAAGAAGA
AGGTGGTGCGTCGCCAAAAAGCGATCGTGGAAAAGGAAGAGGTGACGAGG
GAGAAGGCCAAAGCGGCGGATGAGCGCAAGCGCAAGGCCTTGGCAAAGAA
GAAGGCCGAGCAAGAAGACCGAAAGAGAAAGCTAGAGCAGGAGGCTAACG
CCGCCTCACAAAACCTCGCGGGGGCAAGTGTTCCGGGGGCCGACGGAGTT
GTGGAGATTGGGAAGGATGGAGCGTTCGACGTCGACCAGACACCAATGGC
CGAGCAAGAAGACCGAAAGAGAAAGCTAGAGCAGGAGGCTAACGCCGCCT
CACAAAACCTCGCGGGGGCAAGTGTTCCGGGGGCCGACGGAGTTGTGGAG
ATTGGGAAGGATGGAGCGTTCGACGTCGACCAGACACCAATG
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