mRNA_M-pyrifera_M_contig94555.21821.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig94555.21821.1
Unique NamemRNA_M-pyrifera_M_contig94555.21821.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig94555.21821.1 vs. uniprot
Match: A0A1Y2CSM3_9FUNG (PseudoU_synth_2 domain-containing protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2CSM3_9FUNG)

HSP 1 Score: 60.5 bits (145), Expect = 2.170e-9
Identity = 30/49 (61.22%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    1 LWFVHRLERLTSGLMVLATKHETVSQMATALSDRAVCKTYLARVLGRFP 147
            L+ V+RL+RLTSG+++LA   E  SQ+AT LSDR V KTYL+RV G+FP
Sbjct:  173 LYPVNRLDRLTSGILLLALTKEKASQLATELSDRNVSKTYLSRVRGKFP 221
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BLAST of mRNA_M-pyrifera_M_contig94555.21821.1 vs. uniprot
Match: A0A485KXJ1_9STRA (Aste57867_13100 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KXJ1_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 5.160e-8
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 LWFVHRLERLTSGLMVLATKHETVSQMATALSDRAVCKTYLARVLGRFPGS 153
            L  VHRL+RLTSG+++LA        ++T ++DR   KTYLARVLG FP +
Sbjct:  159 LHIVHRLDRLTSGVVILAKNSTKARDLSTTIADRTASKTYLARVLGMFPAA 209
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BLAST of mRNA_M-pyrifera_M_contig94555.21821.1 vs. uniprot
Match: A0A024UVZ1_9STRA (PseudoU_synth_2 domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UVZ1_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 9.680e-8
Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    1 LWFVHRLERLTSGLMVLATKHETVSQMATALSDRAVCKTYLARVLGRFP 147
            L  VHRL+RLTSG+++LA    T   ++T ++DR   KTYLARV G FP
Sbjct:  163 LHIVHRLDRLTSGVVILAKNPSTARTLSTCIADRTASKTYLARVRGAFP 211
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BLAST of mRNA_M-pyrifera_M_contig94555.21821.1 vs. uniprot
Match: A0A6G0XGG3_9STRA (PseudoU_synth_2 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XGG3_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.810e-7
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    1 LWFVHRLERLTSGLMVLATKHETVSQMATALSDRAVCKTYLARVLGRFP 147
            L  VHRL+RLTSG+++LA    T  +++  ++DR   KTYLARV G FP
Sbjct:  158 LHIVHRLDRLTSGVVILAKNSNTARKLSACIADRTASKTYLARVRGTFP 206
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BLAST of mRNA_M-pyrifera_M_contig94555.21821.1 vs. uniprot
Match: A0A024U1M2_9STRA (PseudoU_synth_2 domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U1M2_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.810e-7
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:   10 VHRLERLTSGLMVLATKHETVSQMATALSDRAVCKTYLARVLGRFP 147
            VHRL+RLTSGL+VLA   E  + ++T L DR+V K Y A+VLG FP
Sbjct:  199 VHRLDRLTSGLLVLAKSAEVAADLSTQLIDRSVQKYYFAKVLGVFP 244
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BLAST of mRNA_M-pyrifera_M_contig94555.21821.1 vs. uniprot
Match: A0A1Y2CR01_9FUNG (Pseudouridine synthase n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2CR01_9FUNG)

HSP 1 Score: 54.7 bits (130), Expect = 2.480e-7
Identity = 25/49 (51.02%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 LWFVHRLERLTSGLMVLATKHETVSQMATALSDRAVCKTYLARVLGRFP 147
            L+ V+R++RLTSG+++LA   +  +Q+AT L++R V KTYL RV G+FP
Sbjct:  173 LFSVNRIDRLTSGILLLALTKDKATQLATELAERNVSKTYLCRVRGKFP 221
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BLAST of mRNA_M-pyrifera_M_contig94555.21821.1 vs. uniprot
Match: A0A507EIL0_9FUNG (Pseudouridine synthase n=2 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507EIL0_9FUNG)

HSP 1 Score: 54.3 bits (129), Expect = 3.390e-7
Identity = 24/49 (48.98%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    1 LWFVHRLERLTSGLMVLATKHETVSQMATALSDRAVCKTYLARVLGRFP 147
            L+ V+R++RLTSG++++A + +  +++A  L+DR V KTYL+RV GRFP
Sbjct:  170 LFSVNRIDRLTSGILLVALRKDKAAELAAQLADRTVEKTYLSRVKGRFP 218
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BLAST of mRNA_M-pyrifera_M_contig94555.21821.1 vs. uniprot
Match: A0A396ZMT5_9STRA (PseudoU_synth_2 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A396ZMT5_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 3.760e-7
Identity = 25/46 (54.35%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   10 VHRLERLTSGLMVLATKHETVSQMATALSDRAVCKTYLARVLGRFP 147
            VHRL+RLTSGL+VLA   +  ++++  L +R+V K Y A+VLGRFP
Sbjct:  175 VHRLDRLTSGLLVLAKSADKAAELSAQLVERSVQKFYFAKVLGRFP 220
[Close]
BLAST of mRNA_M-pyrifera_M_contig94555.21821.1 vs. uniprot
Match: W4GIG4_9STRA (PseudoU_synth_2 domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GIG4_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 4.490e-7
Identity = 25/46 (54.35%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   10 VHRLERLTSGLMVLATKHETVSQMATALSDRAVCKTYLARVLGRFP 147
            VHRL+RLTSGL+VLA   +  ++++  L +R+V K Y A+VLGRFP
Sbjct:  199 VHRLDRLTSGLLVLAKSADKAAELSAQLVERSVQKFYFAKVLGRFP 244
[Close]
BLAST of mRNA_M-pyrifera_M_contig94555.21821.1 vs. uniprot
Match: A0A1V9YKI9_9STRA (PseudoU_synth_2 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YKI9_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 4.630e-7
Identity = 26/46 (56.52%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:   10 VHRLERLTSGLMVLATKHETVSQMATALSDRAVCKTYLARVLGRFP 147
            VHRL+RLTSGL+VLA   E    M+  L DR++ K Y+A+V GRFP
Sbjct:  197 VHRLDRLTSGLLVLAKTPEKAQTMSAQLVDRSMLKYYVAKVAGRFP 242
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig94555.21821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y2CSM3_9FUNG2.170e-961.22PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A485KXJ1_9STRA5.160e-850.98Aste57867_13100 protein n=1 Tax=Aphanomyces stella... [more]
A0A024UVZ1_9STRA9.680e-853.06PseudoU_synth_2 domain-containing protein n=2 Tax=... [more]
A0A6G0XGG3_9STRA1.810e-751.02PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A024U1M2_9STRA1.810e-758.70PseudoU_synth_2 domain-containing protein n=2 Tax=... [more]
A0A1Y2CR01_9FUNG2.480e-751.02Pseudouridine synthase n=1 Tax=Rhizoclosmatium glo... [more]
A0A507EIL0_9FUNG3.390e-748.98Pseudouridine synthase n=2 Tax=Chytriomyces confer... [more]
A0A396ZMT5_9STRA3.760e-754.35PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
W4GIG4_9STRA4.490e-754.35PseudoU_synth_2 domain-containing protein n=2 Tax=... [more]
A0A1V9YKI9_9STRA4.630e-756.52PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig94555contigM-pyrifera_M_contig94555:14..166 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816859.0590503-CDS-M-pyrifera_M_contig94555:13..1661622816859.0590503-CDS-M-pyrifera_M_contig94555:13..166Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94555 14..166 +
1692278220.2795053-CDS-M-pyrifera_M_contig94555:13..1661692278220.2795053-CDS-M-pyrifera_M_contig94555:13..166Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94555 14..166 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig94555.21821.1prot_M-pyrifera_M_contig94555.21821.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig94555 14..166 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig94555.21821.1

>prot_M-pyrifera_M_contig94555.21821.1 ID=prot_M-pyrifera_M_contig94555.21821.1|Name=mRNA_M-pyrifera_M_contig94555.21821.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=51bp
LWFVHRLERLTSGLMVLATKHETVSQMATALSDRAVCKTYLARVLGRFPG
S
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mRNA from alignment at M-pyrifera_M_contig94555:14..166+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig94555.21821.1 ID=mRNA_M-pyrifera_M_contig94555.21821.1|Name=mRNA_M-pyrifera_M_contig94555.21821.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=153bp|location=Sequence derived from alignment at M-pyrifera_M_contig94555:14..166+ (Macrocystis pyrifera P11B4 male)
TTATGGTTTGTGCACCGCTTAGAACGTCTCACATCTGGTTTGATGGTCTT
GGCTACAAAGCATGAGACAGTTTCACAAATGGCAACAGCCTTATCTGATC
GCGCTGTTTGTAAAACGTACCTAGCACGTGTTCTTGGTCGTTTTCCTGGC
TCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig94555:14..166+

>mRNA_M-pyrifera_M_contig94555.21821.1 ID=mRNA_M-pyrifera_M_contig94555.21821.1|Name=mRNA_M-pyrifera_M_contig94555.21821.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig94555:14..166+ (Macrocystis pyrifera P11B4 male)
TTATGGTTTGTGCACCGCTTAGAACGTCTCACATCTGGTTTGATGGTCTT
GGCTACAAAGCATGAGACAGTTTCACAAATGGCAACAGCCTTATCTGATC
GCGCTGTTTGTAAAACGTACCTAGCACGTGTTCTTGGTCGTTTTCCTGGC
TCCTTATGGTTTGTGCACCGCTTAGAACGTCTCACATCTGGTTTGATGGT
CTTGGCTACAAAGCATGAGACAGTTTCACAAATGGCAACAGCCTTATCTG
ATCGCGCTGTTTGTAAAACGTACCTAGCACGTGTTCTTGGTCGTTTTCCT
GGCTCC
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