mRNA_M-pyrifera_M_contig94482.21811.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig94482.21811.1 vs. uniprot
Match: A0A7X5WTH9_9ACTN (Transcription termination/antitermination protein NusG n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A7X5WTH9_9ACTN) HSP 1 Score: 386 bits (992), Expect = 7.370e-135 Identity = 196/217 (90.32%), Postives = 203/217 (93.55%), Query Frame = 1 Query: 10 GDAPEDAAPADVVVDEDQLLEEPEVEA----YVSPYDRPGRWFVLHTQSGYEKKVKQNLEARIASMNMEERIYEVVIPTREIPEFKNGKKVMTEKKLFPGYLLCRTSLDDDAWYVIRNTPGVTGFVNQGGKPSPMRRKDVENFLGVEADRTQEATKKSKPMFEYDLGETVRVKEGPFADFSGEIIEINEDQLKVKVLVNIFGRETPVELEFAQVARL 648 GDA E+A D V+ ED+LL E E E YVSPYDRPGRWFVLHTQSGYEKKVKQNLEARIASMNME+RIYEVVIPTREIPEFKNGKKVMTEKKLFPGYLLCRTSLDDDAWYVIRNTPGVTGFVNQGGKPSPMRR+DVENFLGVEADRTQEATKK+KPMFEY+LGETVRVKEGPFADFSGEIIEINEDQLKVKVLVNIFGRETPVELEFAQVARL Sbjct: 13 GDAAEEAVVDDTVLSEDELLREGEGEVEEEPYVSPYDRPGRWFVLHTQSGYEKKVKQNLEARIASMNMEDRIYEVVIPTREIPEFKNGKKVMTEKKLFPGYLLCRTSLDDDAWYVIRNTPGVTGFVNQGGKPSPMRRRDVENFLGVEADRTQEATKKAKPMFEYELGETVRVKEGPFADFSGEIIEINEDQLKVKVLVNIFGRETPVELEFAQVARL 229
BLAST of mRNA_M-pyrifera_M_contig94482.21811.1 vs. uniprot
Match: A0A358A212_9ACTN (Transcription termination/antitermination protein NusG n=9 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A358A212_9ACTN) HSP 1 Score: 370 bits (949), Expect = 9.360e-128 Identity = 191/231 (82.68%), Postives = 204/231 (88.31%), Query Frame = 1 Query: 1 WTGGDA----PE-------DAAPADV-VVDEDQLLE---EPEVEAYVSPYDRPGRWFVLHTQSGYEKKVKQNLEARIASMNMEERIYEVVIPTREIPEFKNGKKVMTEKKLFPGYLLCRTSLDDDAWYVIRNTPGVTGFVNQGGKPSPMRRKDVENFLGVEADRTQEATKKSKPMFEYDLGETVRVKEGPFADFSGEIIEINEDQLKVKVLVNIFGRETPVELEFAQVARL 648 WTGG+A PE + ADV V+DED LLE + + E Y+SP+DRPG+WFVLHTQSGYEKKVKQNLEARIASMNME RI+EVVIPTRE+PEFKNGKKVMTEKKLFPGYLLCRT LDDDAWYVIRNTPGVTGFVNQGGKPSPMRRKDVENFLG+EADR QE +KKSKPMFEY +GETVRVKEGPFADFSGEIIEINEDQLKVKVLVNIFGRETPVELEFAQVARL Sbjct: 35 WTGGEAMSGRPETETGSATETGSADVEVLDEDALLEAGEDADEERYISPFDRPGKWFVLHTQSGYEKKVKQNLEARIASMNMENRIHEVVIPTREVPEFKNGKKVMTEKKLFPGYLLCRTVLDDDAWYVIRNTPGVTGFVNQGGKPSPMRRKDVENFLGIEADRKQEQSKKSKPMFEYSMGETVRVKEGPFADFSGEIIEINEDQLKVKVLVNIFGRETPVELEFAQVARL 265
BLAST of mRNA_M-pyrifera_M_contig94482.21811.1 vs. uniprot
Match: A0A7K1ZD23_9ACTN (Transcription termination/antitermination protein NusG n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1ZD23_9ACTN) HSP 1 Score: 364 bits (935), Expect = 2.300e-125 Identity = 181/201 (90.05%), Postives = 190/201 (94.53%), Query Frame = 1 Query: 46 VVDEDQLLEEPEVEAYVSPYDRPGRWFVLHTQSGYEKKVKQNLEARIASMNMEERIYEVVIPTREIPEFKNGKKVMTEKKLFPGYLLCRTSLDDDAWYVIRNTPGVTGFVNQGGKPSPMRRKDVENFLGVEADRTQEATKKSKPMFEYDLGETVRVKEGPFADFSGEIIEINEDQLKVKVLVNIFGRETPVELEFAQVARL 648 V+ ED +L E E YVSPYDRPGRWFVLHTQSGYEKKVKQNL+ARIASMNMEERIYEVVIPTRE PEFKNGKKV+TEKKLFPGYLLCRT LDDD+WYVIRNTPGVTGFVNQGGKPSPMRRKDVENFLGVEADRTQEA K+SKPMFEY +GETVRV+EGPFADFSGEIIEINEDQL+VKVLVNIFGRETPVELEFAQVARL Sbjct: 83 VLSEDDILAEEEP-PYVSPYDRPGRWFVLHTQSGYEKKVKQNLQARIASMNMEERIYEVVIPTRETPEFKNGKKVITEKKLFPGYLLCRTRLDDDSWYVIRNTPGVTGFVNQGGKPSPMRRKDVENFLGVEADRTQEAAKRSKPMFEYGMGETVRVREGPFADFSGEIIEINEDQLRVKVLVNIFGRETPVELEFAQVARL 282
BLAST of mRNA_M-pyrifera_M_contig94482.21811.1 vs. uniprot
Match: A0A3M2H0D3_ACTSX (Transcription termination/antitermination protein NusG n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2H0D3_ACTSX) HSP 1 Score: 330 bits (846), Expect = 4.940e-112 Identity = 165/208 (79.33%), Postives = 181/208 (87.02%), Query Frame = 1 Query: 25 DAAPADVVVDEDQLLEEPEVEAYVSPYDRPGRWFVLHTQSGYEKKVKQNLEARIASMNMEERIYEVVIPTREIPEFKNGKKVMTEKKLFPGYLLCRTSLDDDAWYVIRNTPGVTGFVNQGGKPSPMRRKDVENFLGVEADRTQEATKKSKPMFEYDLGETVRVKEGPFADFSGEIIEINEDQLKVKVLVNIFGRETPVELEFAQVARL 648 DAA A V+DED LLE SPYD PGRWFV+HTQSGYEKKVKQNLEARIASM ME RI+EVVIPT E+PEFKNGKKV+TEKKLFPGYLL R +LDDDAWYVIRNTPGVTGFVNQGGKP+P+RR+DVE FLG A+ E KK+KP+F +D+GETVRVKEGPFADFSGEIIEINEDQLKVKVLV+IFGRETPVELEF+QVARL Sbjct: 61 DAADAVEVLDEDALLETDTTARAPSPYDLPGRWFVVHTQSGYEKKVKQNLEARIASMGMEGRIHEVVIPTHEVPEFKNGKKVITEKKLFPGYLLVRCALDDDAWYVIRNTPGVTGFVNQGGKPTPLRRRDVEKFLGTGAEEAAETVKKAKPLFAFDVGETVRVKEGPFADFSGEIIEINEDQLKVKVLVDIFGRETPVELEFSQVARL 268
BLAST of mRNA_M-pyrifera_M_contig94482.21811.1 vs. uniprot
Match: A0A6B1EB44_9ACTN (Transcription termination/antitermination protein NusG n=7 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1EB44_9ACTN) HSP 1 Score: 317 bits (813), Expect = 1.500e-107 Identity = 160/214 (74.77%), Postives = 183/214 (85.51%), Query Frame = 1 Query: 25 DAAPAD-VVVDEDQLLEEP-----EVEAYVSPYDRPGRWFVLHTQSGYEKKVKQNLEARIASMNMEERIYEVVIPTREIPEFKNGKKVMTEKKLFPGYLLCRTSLDDDAWYVIRNTPGVTGFVNQGGKPSPMRRKDVENFLGVEADRTQEATKKSKPMFEYDLGETVRVKEGPFADFSGEIIEINEDQLKVKVLVNIFGRETPVELEFAQVARL 648 D AP D V+ ED L + E A VSPYD+PG+WFV+HTQSGYEKKVKQNLEAR ASMNME RI+EVVIP R++PEFKNGKKV++ K+LFPGY+ R LDD+ W VIR+TP VTGFVNQGG PSP+RR+DVE FLGVEADR++EA+K++KPMFEY +GETVRVK+GPFADFSGEIIEINEDQLKVKVLVNIFGRETPVELEFAQVARL Sbjct: 19 DPAPGDGTVLTEDDLFDATADAGAEAPAPVSPYDKPGKWFVVHTQSGYEKKVKQNLEARTASMNMEGRIHEVVIPLRDVPEFKNGKKVISSKRLFPGYVFVRCELDDEVWPVIRDTPNVTGFVNQGGSPSPLRRRDVEAFLGVEADRSREASKRAKPMFEYGMGETVRVKDGPFADFSGEIIEINEDQLKVKVLVNIFGRETPVELEFAQVARL 232
BLAST of mRNA_M-pyrifera_M_contig94482.21811.1 vs. uniprot
Match: UPI001F392166 (transcription termination/antitermination protein NusG n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001F392166) HSP 1 Score: 308 bits (790), Expect = 9.100e-104 Identity = 157/216 (72.69%), Postives = 184/216 (85.19%), Query Frame = 1 Query: 7 GGDAPEDAAPADV-VVDEDQLL-EEPEVEAYVSPYDRPGRWFVLHTQSGYEKKVKQNLEARIASMNMEERIYEVVIPTREIPEFKNGKKVMTEKKLFPGYLLCRTSLDDDAWYVIRNTPGVTGFVNQGGKPSPMRRKDVENFLGVEADRTQEATKKSKPMFEYDLGETVRVKEGPFADFSGEIIEINEDQLKVKVLVNIFGRETPVELEFAQVARL 648 GG A + +A D V+ ED+LL EEP VE SPYDRPG+WFV+HTQSGYEKKVKQNLEARI+SMNMEERI+EVVIP ++ EFKNGKK + +KK+FPGYLL R LDDD+WYVIRNTPGVTGFV QG KPSP+ R+DVE+FL V+A+ +EA K+ KP EY++GETVR+KEGPFADFSG I+EINEDQLKVKVLVNIFGRETPVELEF+QVA+L Sbjct: 39 GGAAADASALDDTEVIGEDELLAEEPRVE---SPYDRPGQWFVVHTQSGYEKKVKQNLEARISSMNMEERIHEVVIPMEDVVEFKNGKKQVVQKKMFPGYLLVRCELDDDSWYVIRNTPGVTGFVGQGAKPSPLPRRDVESFLQVKAEGAEEAPKRGKPRLEYEMGETVRIKEGPFADFSGVIVEINEDQLKVKVLVNIFGRETPVELEFSQVAKL 251
BLAST of mRNA_M-pyrifera_M_contig94482.21811.1 vs. uniprot
Match: UPI001E2A557E (transcription termination/antitermination protein NusG n=1 Tax=Rhabdothermincola sp. EGI L10124 TaxID=2903142 RepID=UPI001E2A557E) HSP 1 Score: 301 bits (772), Expect = 4.970e-101 Identity = 152/209 (72.73%), Postives = 176/209 (84.21%), Query Frame = 1 Query: 22 EDAAPADVVVDEDQLLEEPEVEAYVSPYDRPGRWFVLHTQSGYEKKVKQNLEARIASMNMEERIYEVVIPTREIPEFKNGKKVMTEKKLFPGYLLCRTSLDDDAWYVIRNTPGVTGFVNQGGKPSPMRRKDVENFLGVEADRTQEATKKSKPMFEYDLGETVRVKEGPFADFSGEIIEINEDQLKVKVLVNIFGRETPVELEFAQVARL 648 ED A VVD D LLEE E A S YDRPG+WFV+HTQSGYEKKVKQNLEARI+SMNMEERI+EVVIP ++ EFKNGKK + +KK+FPGYLL R L+DD+WYV+RNTPGVTGFV QG KPSP++R+DVE FL V+ + + A +SKP EY++GETVRVKEGPFADFSGEI+EINEDQLKVKVLVNIFGRETPVELEF+QVA+L Sbjct: 44 EDTADEVEVVDPDGLLEE-ERPAPQSAYDRPGQWFVVHTQSGYEKKVKQNLEARISSMNMEERIHEVVIPMEDVVEFKNGKKQVVQKKVFPGYLLVRCELEDDSWYVVRNTPGVTGFVGQGPKPSPLKRRDVETFLPVKVEGEEAAPARSKPRLEYEMGETVRVKEGPFADFSGEIVEINEDQLKVKVLVNIFGRETPVELEFSQVAKL 251
BLAST of mRNA_M-pyrifera_M_contig94482.21811.1 vs. uniprot
Match: A0A7V8WZ34_9ACTN (Transcription termination/antitermination protein NusG n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V8WZ34_9ACTN) HSP 1 Score: 300 bits (769), Expect = 1.370e-100 Identity = 147/217 (67.74%), Postives = 180/217 (82.95%), Query Frame = 1 Query: 13 DAPE---DAAPADVVVDEDQLLEEPE--VEAYVSPYDRPGRWFVLHTQSGYEKKVKQNLEARIASMNMEERIYEVVIPTREIPEFKNGKKVMTEKKLFPGYLLCRTSLDDDAWYVIRNTPGVTGFVNQGGKPSPMRRKDVENFLGVEADRTQEATKKSKPMFEYDLGETVRVKEGPFADFSGEIIEINEDQLKVKVLVNIFGRETPVELEFAQVARL 648 +APE DAA + V+D + LL+E + +E +SPYDRPG+W+V+HTQSGYEKKVK NLEAR +SMNMEERI+EVVIP ++ EFKNGKKV+ +KK+FPGYLL R LDDD+WYVIRNTPGVTGFV QG KPSP+RR+DVE FL V+ D + T++ KP EY++GETVRVKEGPFADFSGE++ I+E+ LKV VLVNIFGRETPVEL+FAQVA+L Sbjct: 34 EAPEAEADAAESPAVIDPEDLLDEEDRDLEPAISPYDRPGKWYVVHTQSGYEKKVKSNLEARTSSMNMEERIHEVVIPLEDVVEFKNGKKVVVQKKVFPGYLLVRCELDDDSWYVIRNTPGVTGFVGQGAKPSPLRRRDVETFLAVKNDEVEAVTRRGKPKLEYEVGETVRVKEGPFADFSGEVVTIDENHLKVTVLVNIFGRETPVELDFAQVAKL 250
BLAST of mRNA_M-pyrifera_M_contig94482.21811.1 vs. uniprot
Match: A0A6J6HPY6_9ZZZZ (Unannotated protein n=2 Tax=root TaxID=1 RepID=A0A6J6HPY6_9ZZZZ) HSP 1 Score: 299 bits (765), Expect = 4.540e-100 Identity = 146/201 (72.64%), Postives = 171/201 (85.07%), Query Frame = 1 Query: 46 VVDEDQLLEEPEVEAYVSPYDRPGRWFVLHTQSGYEKKVKQNLEARIASMNMEERIYEVVIPTREIPEFKNGKKVMTEKKLFPGYLLCRTSLDDDAWYVIRNTPGVTGFVNQGGKPSPMRRKDVENFLGVEADRTQEATKKSKPMFEYDLGETVRVKEGPFADFSGEIIEINEDQLKVKVLVNIFGRETPVELEFAQVARL 648 V+D D LLEE SP+DRPGRWFV+HTQSGYEKKVKQNLEARI+SMNME+ I+EVVIP ++ EFKNGKK + +KK+FPGYLL R ++DD+WYVIRNTPGVTGFV QG KPSP+ R+DVE FL V+ + + ATK+ KP EY++GETVRVKEGPFADFSGEI+EINEDQLKVKVLVNIFGRETPVELEF+QVA+L Sbjct: 45 VIDTDDLLEESRPRPQ-SPFDRPGRWFVVHTQSGYEKKVKQNLEARISSMNMEDNIHEVVIPMEDVVEFKNGKKQVVQKKVFPGYLLVRCDMEDDSWYVIRNTPGVTGFVGQGAKPSPLPRRDVETFLQVKEEGDEIATKRGKPRLEYEMGETVRVKEGPFADFSGEIVEINEDQLKVKVLVNIFGRETPVELEFSQVAKL 244
BLAST of mRNA_M-pyrifera_M_contig94482.21811.1 vs. uniprot
Match: A0A7V9JY93_9ACTN (Transcription termination/antitermination protein NusG n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9JY93_9ACTN) HSP 1 Score: 299 bits (765), Expect = 8.950e-100 Identity = 155/218 (71.10%), Postives = 177/218 (81.19%), Query Frame = 1 Query: 16 APEDAAPADV----VVDEDQLLE---EPEVEAYVSPYDRPGRWFVLHTQSGYEKKVKQNLEARIASMNMEERIYEVVIPTREIPEFKNGKKVMTEKKLFPGYLLCRTSLDDDAWYVIRNTPGVTGFVNQGGKPSPMRRKDVENFLGVEADRTQEATKKSKPMFEYDLGETVRVKEGPFADFSGEIIEINEDQLKVKVLVNIFGRETPVELEFAQVARL 648 AP D AD VVD D LL+ EPE + SPYDRPG+W+V+HTQSGYEKKV+QNL+AR SMNMEERI+EVVIP ++ EFKNGKKV+ +KK+FPGYLL R LDDD+WYVIRNTPGVTGFV QG KPSP+RR+DVENFL V+AD + A K+ KP Y+L ETVRVKEGPFADFSG IIEINED LKVKVLVNIFGRETPVELEF+QVA+L Sbjct: 49 APADDLVADADGSEVVDVDDLLDAALEPEPDE--SPYDRPGKWYVVHTQSGYEKKVQQNLQARTQSMNMEERIHEVVIPMEDVVEFKNGKKVVVQKKVFPGYLLVRCRLDDDSWYVIRNTPGVTGFVGQGAKPSPLRRRDVENFLMVKADDAESAAKRGKPKHGYELNETVRVKEGPFADFSGAIIEINEDHLKVKVLVNIFGRETPVELEFSQVAKL 264 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig94482.21811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig94482.21811.1 >prot_M-pyrifera_M_contig94482.21811.1 ID=prot_M-pyrifera_M_contig94482.21811.1|Name=mRNA_M-pyrifera_M_contig94482.21811.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=217bp WTGGDAPEDAAPADVVVDEDQLLEEPEVEAYVSPYDRPGRWFVLHTQSGYback to top mRNA from alignment at M-pyrifera_M_contig94482:91..741- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig94482.21811.1 ID=mRNA_M-pyrifera_M_contig94482.21811.1|Name=mRNA_M-pyrifera_M_contig94482.21811.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=651bp|location=Sequence derived from alignment at M-pyrifera_M_contig94482:91..741- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig94482:91..741- >mRNA_M-pyrifera_M_contig94482.21811.1 ID=mRNA_M-pyrifera_M_contig94482.21811.1|Name=mRNA_M-pyrifera_M_contig94482.21811.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1302bp|location=Sequence derived from alignment at M-pyrifera_M_contig94482:91..741- (Macrocystis pyrifera P11B4 male)back to top |