mRNA_M-pyrifera_M_contig94468.21807.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig94468.21807.1
Unique NamemRNA_M-pyrifera_M_contig94468.21807.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig94468.21807.1 vs. uniprot
Match: A0A024TF71_9STRA (Fibronectin type-III domain-containing protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TF71_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.970e-16
Identity = 54/135 (40.00%), Postives = 72/135 (53.33%), Query Frame = 1 
Query:   76 WESHVSPRKFDVRAELVASIPLTGMRPNRGKAENAARFRRRIVLFERGGNVPLSHKVRQAMEEGALAVVIFDNTGRCDNDK-----FNQACVPGSDISNDDGFAALDPIAAWKGLDRIPTLLISRASGESLLAKL 465
            W  H SP+ + V AE+VA+ P+   RP     EN  R R   +   R G +PL +KV  A   GALAVVI D  G CD+D      F+  C  GS+ +  +GF A D  A W  + RIP +L+ R    +LLA+L
Sbjct:  750 WPGHFSPKTYSVVAEIVAASPVLADRP----LENDVRDR---IALVRRGKLPLFNKVLHAQNAGALAVVIVDADGLCDDDSGTGGTFDHHCSVGSNHAFGEGFGAQDDAAVWSAI-RIPHVLLLRGDAAALLARL 876
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig94468.21807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A024TF71_9STRA1.970e-1640.00Fibronectin type-III domain-containing protein n=3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig94468contigM-pyrifera_M_contig94468:96..563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue1.2e-16
Seed eggNOG ortholog4792.ETI44164
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Fibronectin type 3 domain
EggNOG OGs29K29@1,2RTB6@2759,3QBDI@4776
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size468
Cds size468
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816858.4880176-CDS-M-pyrifera_M_contig94468:95..5631622816858.4880176-CDS-M-pyrifera_M_contig94468:95..563Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94468 96..563 -
1692278220.0116954-CDS-M-pyrifera_M_contig94468:95..5631692278220.0116954-CDS-M-pyrifera_M_contig94468:95..563Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94468 96..563 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig94468.21807.1prot_M-pyrifera_M_contig94468.21807.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig94468 96..563 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig94468.21807.1

>prot_M-pyrifera_M_contig94468.21807.1 ID=prot_M-pyrifera_M_contig94468.21807.1|Name=mRNA_M-pyrifera_M_contig94468.21807.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=156bp
PVAVVSDTLRRVSLLSESATVRVAGWESHVSPRKFDVRAELVASIPLTGM
RPNRGKAENAARFRRRIVLFERGGNVPLSHKVRQAMEEGALAVVIFDNTG
RCDNDKFNQACVPGSDISNDDGFAALDPIAAWKGLDRIPTLLISRASGES
LLAKLG
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mRNA from alignment at M-pyrifera_M_contig94468:96..563-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig94468.21807.1 ID=mRNA_M-pyrifera_M_contig94468.21807.1|Name=mRNA_M-pyrifera_M_contig94468.21807.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig94468:96..563- (Macrocystis pyrifera P11B4 male)
CCAGTGGCAGTTGTCTCTGACACGTTGCGTCGCGTGTCCTTGCTGAGCGA
ATCCGCTACGGTCCGTGTTGCCGGTTGGGAAAGTCACGTGAGTCCCCGAA
AGTTTGACGTCCGCGCCGAACTGGTCGCCAGCATCCCTCTCACGGGCATG
CGTCCCAACCGCGGCAAGGCTGAGAATGCCGCTCGATTTCGGCGTCGAAT
TGTGCTCTTTGAACGAGGAGGAAATGTCCCACTCTCCCACAAGGTGCGGC
AAGCCATGGAAGAAGGCGCGCTTGCAGTCGTGATCTTTGACAACACGGGT
CGCTGCGACAATGACAAGTTCAACCAAGCTTGCGTCCCAGGGAGCGACAT
TTCCAACGACGATGGCTTTGCAGCCCTCGACCCCATTGCCGCCTGGAAAG
GTCTCGATCGCATCCCAACCCTCCTCATCTCCAGAGCCTCCGGAGAATCC
CTCCTCGCCAAACTCGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig94468:96..563-

>mRNA_M-pyrifera_M_contig94468.21807.1 ID=mRNA_M-pyrifera_M_contig94468.21807.1|Name=mRNA_M-pyrifera_M_contig94468.21807.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=936bp|location=Sequence derived from alignment at M-pyrifera_M_contig94468:96..563- (Macrocystis pyrifera P11B4 male)
CCAGTGGCAGTTGTCTCTGACACGTTGCGTCGCGTGTCCTTGCTGAGCGA
ATCCGCTACGGTCCGTGTTGCCGGTTGGGAAAGTCACGTGAGTCCCCGAA
AGTTTGACGTCCGCGCCGAACTGGTCGCCAGCATCCCTCTCACGGGCATG
CGTCCCAACCGCGGCAAGGCTGAGAATGCCGCTCGATTTCGGCGTCGAAT
TGTGCTCTTTGAACGAGGAGGAAATGTCCCACTCTCCCACAAGGTGCGGC
AAGCCATGGAAGAAGGCGCGCTTGCAGTCGTGATCTTTGACAACACGGGT
CGCTGCGACAATGACAAGTTCAACCAAGCTTGCGTCCCAGGGAGCGACAT
TTCCAACGACGATGGCTTTGCAGCCCTCGACCCCATTGCCGCCTGGAAAG
GTCTCGATCGCATCCCAACCCTCCTCATCTCCAGAGCCTCCGGAGAATCC
CTCCTCGCCAAACTCGGACCAGTGGCAGTTGTCTCTGACACGTTGCGTCG
CGTGTCCTTGCTGAGCGAATCCGCTACGGTCCGTGTTGCCGGTTGGGAAA
GTCACGTGAGTCCCCGAAAGTTTGACGTCCGCGCCGAACTGGTCGCCAGC
ATCCCTCTCACGGGCATGCGTCCCAACCGCGGCAAGGCTGAGAATGCCGC
TCGATTTCGGCGTCGAATTGTGCTCTTTGAACGAGGAGGAAATGTCCCAC
TCTCCCACAAGGTGCGGCAAGCCATGGAAGAAGGCGCGCTTGCAGTCGTG
ATCTTTGACAACACGGGTCGCTGCGACAATGACAAGTTCAACCAAGCTTG
CGTCCCAGGGAGCGACATTTCCAACGACGATGGCTTTGCAGCCCTCGACC
CCATTGCCGCCTGGAAAGGTCTCGATCGCATCCCAACCCTCCTCATCTCC
AGAGCCTCCGGAGAATCCCTCCTCGCCAAACTCGGA
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