mRNA_M-pyrifera_M_contig94302.21777.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig94302.21777.1
Unique NamemRNA_M-pyrifera_M_contig94302.21777.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig94302.21777.1 vs. uniprot
Match: A0A518IKE7_9PLAN (LVIVD repeat protein n=4 Tax=Gimesia TaxID=1649453 RepID=A0A518IKE7_9PLAN)

HSP 1 Score: 492 bits (1266), Expect = 2.510e-169
Identity = 238/247 (96.36%), Postives = 246/247 (99.60%), Query Frame = 1
Query:    1 PLDGYGDGGCLRGNYCFAATGHHSRGSRDDGQGHGLEIFNVADPEQPTFVSRVKFPASYHISNDMWTARVAGDHCVVADTWNGLFVVNIHDIKQPRIVAHAVLPPKSKSDNTPDPVGGIALGQGVIYAAGIFTGLYVVPAPGLATPVIPEQDRAPELKPAQGKTGDPRFLTYQPGGQVRSATVVGDIAWAACGSAGIHAVRLGKTLEPVSVTQGKGEVMHLAVSGSRLYAAENDAGLAIYDIGPEWK 741
            PLDGYGDGGCLRGNYCFAATGHHSRGSRDDG+GHGLEIFNVADPE+PTFVSRVKFPASYHI+NDMWTARVAGDHCVVADTWNGLFVVNIHDIKQPRIVAHAVLPP+SKSDNTPDPVGGIALG+GVIYAAGIFTGLYVVPAPGLATPVIPEQDRAPELK AQGKTGDPRFLTYQPGGQVRSATVVGDIAWAACGSAGIHAV+LGKTLEPVSVT+GKGEVMHLAVSGSRLYAAENDAGLAIYDIGPE+K
Sbjct:  217 PLDGYGDGGCLRGNYCFAATGHHSRGSRDDGKGHGLEIFNVADPEKPTFVSRVKFPASYHITNDMWTARVAGDHCVVADTWNGLFVVNIHDIKQPRIVAHAVLPPRSKSDNTPDPVGGIALGKGVIYAAGIFTGLYVVPAPGLATPVIPEQDRAPELKAAQGKTGDPRFLTYQPGGQVRSATVVGDIAWAACGSAGIHAVKLGKTLEPVSVTKGKGEVMHLAVSGSRLYAAENDAGLAIYDIGPEFK 463          
BLAST of mRNA_M-pyrifera_M_contig94302.21777.1 vs. uniprot
Match: A6C134_9PLAN (Uncharacterized protein n=1 Tax=Gimesia maris DSM 8797 TaxID=344747 RepID=A6C134_9PLAN)

HSP 1 Score: 479 bits (1234), Expect = 9.350e-165
Identity = 230/247 (93.12%), Postives = 243/247 (98.38%), Query Frame = 1
Query:    1 PLDGYGDGGCLRGNYCFAATGHHSRGSRDDGQGHGLEIFNVADPEQPTFVSRVKFPASYHISNDMWTARVAGDHCVVADTWNGLFVVNIHDIKQPRIVAHAVLPPKSKSDNTPDPVGGIALGQGVIYAAGIFTGLYVVPAPGLATPVIPEQDRAPELKPAQGKTGDPRFLTYQPGGQVRSATVVGDIAWAACGSAGIHAVRLGKTLEPVSVTQGKGEVMHLAVSGSRLYAAENDAGLAIYDIGPEWK 741
            PLDG+GDGGCLRGNYCFAATGHHSRGSRDDG+GHGLEIFNVADPE+PTFVSRVKFPASYHI+NDMWTARVAGDHCVVADTWNGLFVVNIHDIKQPRIVAH++LPP+SKSD+TPDPVGGIALG+GVIYAAGIFTGLYVVPAPGLATPV+PEQD+APEL  AQGKTGDPRFLTYQPGGQVRSATVVGDIAWAACGSAGIHAV+LGKTLEPVSVT GKGEVMHLAVSGSRLYAAENDAGLAIYDIGP+ K
Sbjct:  219 PLDGFGDGGCLRGNYCFAATGHHSRGSRDDGKGHGLEIFNVADPEKPTFVSRVKFPASYHITNDMWTARVAGDHCVVADTWNGLFVVNIHDIKQPRIVAHSILPPRSKSDHTPDPVGGIALGKGVIYAAGIFTGLYVVPAPGLATPVVPEQDKAPELTAAQGKTGDPRFLTYQPGGQVRSATVVGDIAWAACGSAGIHAVQLGKTLEPVSVTPGKGEVMHLAVSGSRLYAAENDAGLAIYDIGPDLK 465          
BLAST of mRNA_M-pyrifera_M_contig94302.21777.1 vs. uniprot
Match: A0A6I6ACK7_9PLAN (Uncharacterized protein n=13 Tax=Gimesia TaxID=1649453 RepID=A0A6I6ACK7_9PLAN)

HSP 1 Score: 473 bits (1218), Expect = 3.150e-162
Identity = 228/247 (92.31%), Postives = 240/247 (97.17%), Query Frame = 1
Query:    1 PLDGYGDGGCLRGNYCFAATGHHSRGSRDDGQGHGLEIFNVADPEQPTFVSRVKFPASYHISNDMWTARVAGDHCVVADTWNGLFVVNIHDIKQPRIVAHAVLPPKSKSDNTPDPVGGIALGQGVIYAAGIFTGLYVVPAPGLATPVIPEQDRAPELKPAQGKTGDPRFLTYQPGGQVRSATVVGDIAWAACGSAGIHAVRLGKTLEPVSVTQGKGEVMHLAVSGSRLYAAENDAGLAIYDIGPEWK 741
            PLDG+GDGGCLRGNYCFAATGHHSRGSRDDGQGHGLEIFNVADP+QPTFVSRVKFPASYHI+NDMWTARVAGDHCVVADTWNGLFVVNIHDIKQPRIVAHA+LPP+SKSDNTPDPVGGIALG+ VIYAAGIFTGLYVVPAPGLA+PV+ EQDRAPELKPA  + GDPRFLTYQPGGQVRSATVVGDIAWAACGSAGIHAV+LGK+L+PVSVT GKGEVMHLAVSGSRLYAAENDAGLAIYDIGPE K
Sbjct:  205 PLDGFGDGGCLRGNYCFAATGHHSRGSRDDGQGHGLEIFNVADPKQPTFVSRVKFPASYHITNDMWTARVAGDHCVVADTWNGLFVVNIHDIKQPRIVAHAILPPRSKSDNTPDPVGGIALGKDVIYAAGIFTGLYVVPAPGLASPVVSEQDRAPELKPASDQAGDPRFLTYQPGGQVRSATVVGDIAWAACGSAGIHAVQLGKSLKPVSVTPGKGEVMHLAVSGSRLYAAENDAGLAIYDIGPELK 451          
BLAST of mRNA_M-pyrifera_M_contig94302.21777.1 vs. uniprot
Match: A0A517VDN2_9PLAN (LVIVD repeat protein n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VDN2_9PLAN)

HSP 1 Score: 456 bits (1172), Expect = 4.310e-155
Identity = 221/247 (89.47%), Postives = 233/247 (94.33%), Query Frame = 1
Query:    1 PLDGYGDGGCLRGNYCFAATGHHSRGSRDDGQGHGLEIFNVADPEQPTFVSRVKFPASYHISNDMWTARVAGDHCVVADTWNGLFVVNIHDIKQPRIVAHAVLPPKSKSDNTPDPVGGIALGQGVIYAAGIFTGLYVVPAPGLATPVIPEQDRAPELKPAQGKTGDPRFLTYQPGGQVRSATVVGDIAWAACGSAGIHAVRLGKTLEPVSVTQGKGEVMHLAVSGSRLYAAENDAGLAIYDIGPEWK 741
            PLDGYGDGGCLRGNYCFAATGHHSR +  DG+GHGLEIFNV DPE+P FVSRVKFPASYHISNDMWTARVAGDHCVVADTWNGLFVVNIHDI+QPRIVAHAVLPPKSKSDNTPDPVGGIALG+ VIYAAGI TGLYVVPAPGLA+PV+ E+DRAPE+K AQ K  DPRFLTYQPGGQVRSATVVGDIAWAACGSAGIHAV+LGKTL+PVSVT GKGEVMHLAVSGSRLYAAENDAGLAIYDIGP+ K
Sbjct:  219 PLDGYGDGGCLRGNYCFAATGHHSRANPKDGKGHGLEIFNVVDPEKPMFVSRVKFPASYHISNDMWTARVAGDHCVVADTWNGLFVVNIHDIQQPRIVAHAVLPPKSKSDNTPDPVGGIALGKDVIYAAGILTGLYVVPAPGLASPVVREEDRAPEIKAAQDKNSDPRFLTYQPGGQVRSATVVGDIAWAACGSAGIHAVQLGKTLKPVSVTPGKGEVMHLAVSGSRLYAAENDAGLAIYDIGPDLK 465          
BLAST of mRNA_M-pyrifera_M_contig94302.21777.1 vs. uniprot
Match: A0A350KB05_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A350KB05_9PLAN)

HSP 1 Score: 355 bits (911), Expect = 3.720e-122
Identity = 174/192 (90.62%), Postives = 185/192 (96.35%), Query Frame = 1
Query:  166 PASYHISNDMWTARVAGDHCVVADTWNGLFVVNIHDIKQPRIVAHAVLPPKSKSDNTPDPVGGIALGQGVIYAAGIFTGLYVVPAPGLATPVIPEQDRAPELKPAQGKTGDPRFLTYQPGGQVRSATVVGDIAWAACGSAGIHAVRLGKTLEPVSVTQGKGEVMHLAVSGSRLYAAENDAGLAIYDIGPEWK 741
            PASYHISNDMWTARVAGDHCVVADTWNGLFVVNIHD+KQPRIVAHA+LPP+SKSD+TPDPVGGIALG+GVIYAAGIFTGLYVVPAPGLATPV+ EQDRAPEL   Q + GDPRFLTYQPGGQVRSATVVGDIAWAACGSAGIHAVRLGKTLEPVSVT+GKGEVMHLAVSGSRL+AAENDAGLAIYDI PE++
Sbjct:    1 PASYHISNDMWTARVAGDHCVVADTWNGLFVVNIHDMKQPRIVAHAILPPRSKSDHTPDPVGGIALGKGVIYAAGIFTGLYVVPAPGLATPVVREQDRAPELTANQDQAGDPRFLTYQPGGQVRSATVVGDIAWAACGSAGIHAVRLGKTLEPVSVTKGKGEVMHLAVSGSRLHAAENDAGLAIYDISPEYE 192          
BLAST of mRNA_M-pyrifera_M_contig94302.21777.1 vs. uniprot
Match: A0A352VTU2_9SPIR (Uncharacterized protein (Fragment) n=1 Tax=Spirochaetia bacterium TaxID=2053615 RepID=A0A352VTU2_9SPIR)

HSP 1 Score: 208 bits (529), Expect = 1.260e-60
Identity = 113/249 (45.38%), Postives = 164/249 (65.86%), Query Frame = 1
Query:    1 PLDGYGDGGCLRGNYCFAATGHHSR-----GSRDD--GQGHGLEIFNVADPEQPTFVSRVKFPASYHISNDMWTARVAGDHCVVADTWNGLFVVNIHDIKQPRIVAHAVLPPKSKSDNTPDPVGGIALGQGVIYAAGIFTGLYVVPAPGLATPVIPEQDRAPELKPAQGKTGDPRFLTYQPGGQVRSATVVGDIAWAACGSAGIHAVRLGKTLEPVSVTQGKGEVMHLAVSGSRLYAAENDAGLAIYDI 726
            PLDG+GDG  ++G YCFAATG HSR       RD   G GHGLEIF++++P++P F +R+K P  Y   +D W   V+GD+  VADT+NG+FVV+I DI +P    H  LP   +S+  PD V GIALG+GVIY +G +T L+V+ AP +A PV PE D+ P + P Q    + +F  Y+P GQV +A  +GDIA AACGSAG+HAV+L   ++ ++  + +   + + V+ + +Y AE++ GL+I+ +
Sbjct:  120 PLDGFGDGVFVQGKYCFAATGSHSRKMKERNERDPEYGGGHGLEIFDISNPKKPKFAARIKMPRLYRRQSDFWNVIVSGDYAFVADTYNGVFVVDISDINKPCFAGHQQLP-WVESEKVPDSVSGIALGKGVIYTSGRWTDLHVINAP-MARPVTPEPDKPPVIPPEQTVLNE-KFNIYKPDGQVWAAAFIGDIALAACGSAGLHAVQLLPEIKKLAEYKTESFAVDVKVNKNLVYVAESEGGLSIWKV 365          
BLAST of mRNA_M-pyrifera_M_contig94302.21777.1 vs. uniprot
Match: A0A1G3NYY2_9SPIR (Uncharacterized protein n=1 Tax=Spirochaetes bacterium GWF1_41_5 TaxID=1802188 RepID=A0A1G3NYY2_9SPIR)

HSP 1 Score: 208 bits (529), Expect = 1.690e-60
Identity = 113/249 (45.38%), Postives = 164/249 (65.86%), Query Frame = 1
Query:    1 PLDGYGDGGCLRGNYCFAATGHHSR-----GSRDD--GQGHGLEIFNVADPEQPTFVSRVKFPASYHISNDMWTARVAGDHCVVADTWNGLFVVNIHDIKQPRIVAHAVLPPKSKSDNTPDPVGGIALGQGVIYAAGIFTGLYVVPAPGLATPVIPEQDRAPELKPAQGKTGDPRFLTYQPGGQVRSATVVGDIAWAACGSAGIHAVRLGKTLEPVSVTQGKGEVMHLAVSGSRLYAAENDAGLAIYDI 726
            PLDG+GDG  ++G YCFAATG HSR       RD   G GHGLEIF++++P++P F +R+K P  Y   +D W   V+GD+  VADT+NG+FVV+I DI +P    H  LP   +S+  PD V GIALG+GVIY +G +T L+V+ AP +A PV PE D+ P + P Q    + +F  Y+P GQV +A  +GDIA AACGSAG+HAV+L   ++ ++  + +   + + V+ + +Y AE++ GL+I+ +
Sbjct:   61 PLDGFGDGVFVQGKYCFAATGSHSRKMKERNERDPEYGGGHGLEIFDISNPKKPKFAARIKMPRLYRRQSDFWNVIVSGDYAFVADTYNGVFVVDISDINKPCFAGHQQLP-WVESEKVPDSVSGIALGKGVIYTSGRWTDLHVINAP-MARPVTPEPDKPPVIPPEQTVLNE-KFNIYKPDGQVWAAAFIGDIALAACGSAGLHAVQLLPEIKKLAEYKTESFAVDVKVNKNLVYVAESEGGLSIWKV 306          
BLAST of mRNA_M-pyrifera_M_contig94302.21777.1 vs. uniprot
Match: A0A2E0R476_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2E0R476_9BACT)

HSP 1 Score: 205 bits (522), Expect = 5.450e-57
Identity = 115/255 (45.10%), Postives = 155/255 (60.78%), Query Frame = 1
Query:    1 PLDGYGDGGCLRGNYCFAATGHHSR------GSRDDGQGHGLEIFNVADPEQPTFVSRVKFPASYHISNDMWTARVAGDHCVVADTWNGLFVVNIHDIKQPRIVAHAVLP-PKSKSDNTPDPVGGIALGQGVIYAAGIFTGLYVVPAPGLATPVIPEQDRAPELKPAQGKTGDPRFLTYQPGGQVRSATVVGDIAWA--ACGSAGIHAVRLGK-TLEPVSVTQGKGEVMHLAVSGSRLYAAENDAGLAIYDIGPE 735
            PLDGYGDG C+     +AATGHHSR      G    G+GHGLEIF+++DP +PTFVSRVKFP  Y I  DMW   V   H  VADT NG+FVV++ D K P IV    L  P+ K +  P   GG+A+G G+IY AG +T L+++ AP +A+P+  E  + P + P      +     Y+P GQV S  +  D+ +A  ACGSAGIH VR+G+ TLEPVSV         + + G  ++AAE   G++I+D+ P+
Sbjct:  625 PLDGYGDGLCVHDGMLYAATGHHSREPHREEGDPGYGRGHGLEIFDLSDPAKPTFVSRVKFPKFYAIGFDMWDVSVVNGHAFVADTHNGIFVVDVRDPKAPAIVGRTQLDIPEGKDE--PALFGGLAVGDGIIYGAGGWTDLHLIDAPEIASPIAKEPGKLPVIGPEVEPDNERILAAYRPEGQVWSVAMADDLPYAVAACGSAGIHVVRVGEGTLEPVSVVPTDDFTTCVCIQGRTVFAAEGTGGMSIWDLSPD 877          
BLAST of mRNA_M-pyrifera_M_contig94302.21777.1 vs. uniprot
Match: A0A7X7NBV3_9BACT (Uncharacterized protein n=1 Tax=Lentisphaerae bacterium TaxID=1932692 RepID=A0A7X7NBV3_9BACT)

HSP 1 Score: 197 bits (501), Expect = 2.970e-55
Identity = 101/210 (48.10%), Postives = 131/210 (62.38%), Query Frame = 1
Query:    4 LDGYGDGGCLRGNYCFAATGHHSRGSRDD---GQGHGLEIFNVADPEQPTFVSRVKFPASYHISNDMWTARVAGDHCVVADTWNGLFVVNIHDIKQPRIVAHAVLP------PKSKSDNTPDPVGGIALGQGVIYAAGIFTGLYVVPAPGLATPVIPEQDRAPELKPAQGKTGDPRFLTYQPGGQVRSATVVGDIAWAACGSAGIHAVRL 606
            LDGYGDG  LRGN CFAATGHH++   +D   G+GHG+EIF+++D   P  ++ VKFP  Y+   D WT R    H  VADT NG+FV++I     PR + H  LP         K+   PD V GIA+G GV+Y AG  TGLYVV  PG+A P+ P     P++ PA   + DP F+ Y+P GQVR A + GD+AW ACG AG+H ++L
Sbjct:  212 LDGYGDGIDLRGNLCFAATGHHAKSGTEDERFGRGHGVEIFDISDATNPRKIAGVKFPQLYNRYRDFWTPRATAKHLFVADTHNGVFVLDISTPSSPRFIGHLRLPLAKALYDYKKTTQLPDSVMGIAVGNGVLYVAGSQTGLYVVRMPGIAVPLPPLSSAPPKITPAPPLSPDPNFICYRPDGQVRGALIEGDLAWVACGRAGLHLLKL 421          
BLAST of mRNA_M-pyrifera_M_contig94302.21777.1 vs. uniprot
Match: A0A2D6SWK8_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D6SWK8_9PLAN)

HSP 1 Score: 192 bits (487), Expect = 3.010e-52
Identity = 108/249 (43.37%), Postives = 146/249 (58.63%), Query Frame = 1
Query:    1 PLDGYGDGGCLRGNYCFAATGHHSR-------GSRDDGQGHGLEIFNVADPEQPTFVSRVKFPASYHISNDMWTARVAGDHCVVADTWNGLFVVNIHDIKQPRIVAHAVLPPKSKSDNTPDPVGGIALGQGVIYAAGIFTGLYVVPAPGLATPVIPEQDRAPELKPAQGKTGDPRFLTYQPGGQVRSATVVGDIAWAACGSAGIHAVRLGKTLEPVSVTQGKGEVMHLAVSGSRLYAAENDAGLAIYDI 726
            PLDG+GDG  L G Y +AATGHHSR       G    G+GHGLE+F+V+DP  P  VSRVK PA Y I  DMW+  VA  H  VADT NG+FV+N+ +  +PR V     P +  SD+    +GG+      +Y AG  T L+V+  P +A  V+PE D+   + PA+ +    R+  Y+  GQV +   +GD A  ACG AG+H VRLG  L+ VS  + +     ++VSG  +YAAE   GL +YD+
Sbjct:  648 PLDGFGDGLDLDGRYLYAATGHHSRETPRRNPGDAGYGRGHGLEVFDVSDPAVPKCVSRVKLPAMYDIHADMWSVTVANAHAFVADTRNGVFVLNVENPARPRFVGRWQAP-RVGSDDQFGYIGGLVPVDDHVYVAGGATDLHVLAVPNVARAVVPEADKPLRIPPARPEEAGGRYRVYRTSGQVYAVDFLGDNAILACGGAGLHVVRLGAELQVVSTLETEDLATDVSVSGDLVYAAEGAGGLGVYDL 895          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig94302.21777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A518IKE7_9PLAN2.510e-16996.36LVIVD repeat protein n=4 Tax=Gimesia TaxID=1649453... [more]
A6C134_9PLAN9.350e-16593.12Uncharacterized protein n=1 Tax=Gimesia maris DSM ... [more]
A0A6I6ACK7_9PLAN3.150e-16292.31Uncharacterized protein n=13 Tax=Gimesia TaxID=164... [more]
A0A517VDN2_9PLAN4.310e-15589.47LVIVD repeat protein n=1 Tax=Gimesia algae TaxID=2... [more]
A0A350KB05_9PLAN3.720e-12290.63Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
A0A352VTU2_9SPIR1.260e-6045.38Uncharacterized protein (Fragment) n=1 Tax=Spiroch... [more]
A0A1G3NYY2_9SPIR1.690e-6045.38Uncharacterized protein n=1 Tax=Spirochaetes bacte... [more]
A0A2E0R476_9BACT5.450e-5745.10Uncharacterized protein n=1 Tax=Verrucomicrobiales... [more]
A0A7X7NBV3_9BACT2.970e-5548.10Uncharacterized protein n=1 Tax=Lentisphaerae bact... [more]
A0A2D6SWK8_9PLAN3.010e-5243.37Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig94302contigM-pyrifera_M_contig94302:3..743 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score484.2
Seed ortholog evalue3.7e-134
Seed eggNOG ortholog344747.PM8797T_05630
Hectar predicted targeting categoryother localisation
EggNOG free text desc.LVIVD repeat
EggNOG OGs2J4EG@203682,COG5276@1,COG5276@2
COG Functional cat.S
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size741
Cds size741
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816857.1462886-CDS-M-pyrifera_M_contig94302:2..7431622816857.1462886-CDS-M-pyrifera_M_contig94302:2..743Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94302 3..743 -
1692278219.2803946-CDS-M-pyrifera_M_contig94302:2..7431692278219.2803946-CDS-M-pyrifera_M_contig94302:2..743Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94302 3..743 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig94302.21777.1prot_M-pyrifera_M_contig94302.21777.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig94302 3..743 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig94302.21777.1

>prot_M-pyrifera_M_contig94302.21777.1 ID=prot_M-pyrifera_M_contig94302.21777.1|Name=mRNA_M-pyrifera_M_contig94302.21777.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=247bp
PLDGYGDGGCLRGNYCFAATGHHSRGSRDDGQGHGLEIFNVADPEQPTFV
SRVKFPASYHISNDMWTARVAGDHCVVADTWNGLFVVNIHDIKQPRIVAH
AVLPPKSKSDNTPDPVGGIALGQGVIYAAGIFTGLYVVPAPGLATPVIPE
QDRAPELKPAQGKTGDPRFLTYQPGGQVRSATVVGDIAWAACGSAGIHAV
RLGKTLEPVSVTQGKGEVMHLAVSGSRLYAAENDAGLAIYDIGPEWK
back to top

mRNA from alignment at M-pyrifera_M_contig94302:3..743-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig94302.21777.1 ID=mRNA_M-pyrifera_M_contig94302.21777.1|Name=mRNA_M-pyrifera_M_contig94302.21777.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=741bp|location=Sequence derived from alignment at M-pyrifera_M_contig94302:3..743- (Macrocystis pyrifera P11B4 male)
CCGTTAGACGGTTATGGTGATGGCGGCTGCCTGCGCGGCAACTATTGCTT CGCCGCCACCGGACACCATTCACGGGGGAGCCGCGATGACGGCCAAGGGC ACGGACTCGAAATCTTCAATGTCGCCGATCCCGAACAGCCGACCTTCGTC TCCCGCGTCAAGTTCCCGGCCTCCTATCACATCTCGAACGACATGTGGAC CGCCCGCGTCGCCGGTGATCACTGTGTCGTCGCCGACACCTGGAACGGAC TCTTCGTCGTCAACATTCACGACATCAAGCAACCGCGGATCGTCGCCCAC GCCGTCCTGCCACCCAAGTCAAAGAGTGACAACACCCCCGACCCCGTCGG CGGCATCGCCCTCGGCCAGGGAGTGATCTACGCTGCCGGCATCTTCACCG GACTCTACGTCGTCCCCGCGCCCGGCCTCGCCACTCCGGTCATCCCCGAA CAGGACCGGGCACCCGAACTGAAACCCGCCCAAGGAAAGACCGGCGATCC CCGTTTCCTCACCTACCAGCCCGGCGGTCAGGTCCGCTCTGCCACCGTTG TAGGCGACATCGCCTGGGCCGCCTGCGGCAGTGCCGGAATTCATGCGGTG CGGCTCGGCAAAACCCTGGAGCCGGTCAGCGTGACCCAAGGCAAAGGCGA GGTCATGCACCTGGCCGTCTCCGGCTCGCGACTCTACGCTGCCGAGAACG ACGCCGGGCTCGCCATCTACGACATCGGCCCCGAATGGAAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig94302:3..743-

>mRNA_M-pyrifera_M_contig94302.21777.1 ID=mRNA_M-pyrifera_M_contig94302.21777.1|Name=mRNA_M-pyrifera_M_contig94302.21777.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1482bp|location=Sequence derived from alignment at M-pyrifera_M_contig94302:3..743- (Macrocystis pyrifera P11B4 male)
CCGTTAGACGGTTATGGTGATGGCGGCTGCCTGCGCGGCAACTATTGCTT
CGCCGCCACCGGACACCATTCACGGGGGAGCCGCGATGACGGCCAAGGGC
ACGGACTCGAAATCTTCAATGTCGCCGATCCCGAACAGCCGACCTTCGTC
TCCCGCGTCAAGTTCCCGGCCTCCTATCACATCTCGAACGACATGTGGAC
CGCCCGCGTCGCCGGTGATCACTGTGTCGTCGCCGACACCTGGAACGGAC
TCTTCGTCGTCAACATTCACGACATCAAGCAACCGCGGATCGTCGCCCAC
GCCGTCCTGCCACCCAAGTCAAAGAGTGACAACACCCCCGACCCCGTCGG
CGGCATCGCCCTCGGCCAGGGAGTGATCTACGCTGCCGGCATCTTCACCG
GACTCTACGTCGTCCCCGCGCCCGGCCTCGCCACTCCGGTCATCCCCGAA
CAGGACCGGGCACCCGAACTGAAACCCGCCCAAGGAAAGACCGGCGATCC
CCGTTTCCTCACCTACCAGCCCGGCGGTCAGGTCCGCTCTGCCACCGTTG
TAGGCGACATCGCCTGGGCCGCCTGCGGCAGTGCCGGAATTCATGCGGTG
CGGCTCGGCAAAACCCTGGAGCCGGTCAGCGTGACCCAAGGCAAAGGCGA
GGTCATGCACCTGGCCGTCTCCGGCTCGCGACTCTACGCTGCCGAGAACG
ACGCCGGGCTCGCCATCTACGACATCGGCCCCGAATGGAAGCCGTTAGAC
GGTTATGGTGATGGCGGCTGCCTGCGCGGCAACTATTGCTTCGCCGCCAC
CGGACACCATTCACGGGGGAGCCGCGATGACGGCCAAGGGCACGGACTCG
AAATCTTCAATGTCGCCGATCCCGAACAGCCGACCTTCGTCTCCCGCGTC
AAGTTCCCGGCCTCCTATCACATCTCGAACGACATGTGGACCGCCCGCGT
CGCCGGTGATCACTGTGTCGTCGCCGACACCTGGAACGGACTCTTCGTCG
TCAACATTCACGACATCAAGCAACCGCGGATCGTCGCCCACGCCGTCCTG
CCACCCAAGTCAAAGAGTGACAACACCCCCGACCCCGTCGGCGGCATCGC
CCTCGGCCAGGGAGTGATCTACGCTGCCGGCATCTTCACCGGACTCTACG
TCGTCCCCGCGCCCGGCCTCGCCACTCCGGTCATCCCCGAACAGGACCGG
GCACCCGAACTGAAACCCGCCCAAGGAAAGACCGGCGATCCCCGTTTCCT
CACCTACCAGCCCGGCGGTCAGGTCCGCTCTGCCACCGTTGTAGGCGACA
TCGCCTGGGCCGCCTGCGGCAGTGCCGGAATTCATGCGGTGCGGCTCGGC
AAAACCCTGGAGCCGGTCAGCGTGACCCAAGGCAAAGGCGAGGTCATGCA
CCTGGCCGTCTCCGGCTCGCGACTCTACGCTGCCGAGAACGACGCCGGGC
TCGCCATCTACGACATCGGCCCCGAATGGAAG
back to top