mRNA_M-pyrifera_M_contig94206.21755.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig94206.21755.1
Unique NamemRNA_M-pyrifera_M_contig94206.21755.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig94206.21755.1 vs. uniprot
Match: A0A328C7V9_9DELT (Uncharacterized protein n=2 Tax=Lujinxingia litoralis TaxID=2211119 RepID=A0A328C7V9_9DELT)

HSP 1 Score: 62.0 bits (149), Expect = 1.560e-11
Identity = 32/47 (68.09%), Postives = 34/47 (72.34%), Query Frame = 2 
Query:   29 VVPRQRADYPRVTHPSAAVLATEVTFSLDLHVLSLPLTFALSQDQTL 169
            V+P  +  Y RVTHP AAVL TEV FSLDLHVL  P  F LSQDQTL
Sbjct:    2 VIPHLKVRYSRVTHPFAAVLRTEVPFSLDLHVLGTPPAFILSQDQTL 48
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BLAST of mRNA_M-pyrifera_M_contig94206.21755.1 vs. uniprot
Match: B0TIG3_HELMI (Conserved domain protein n=1 Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) TaxID=498761 RepID=B0TIG3_HELMI)

HSP 1 Score: 52.8 bits (125), Expect = 7.950e-8
Identity = 26/41 (63.41%), Postives = 26/41 (63.41%), Query Frame = -3 
Query:    2 MQVERERHFGG*-YSGGRVSNTWIICPLAGDNSSKGLLIPH 121
            MQVER         SGGRVSN WI C   GDNS KGLLIPH
Sbjct:    1 MQVERRAEVSAEALSGGRVSNAWITCLRVGDNSPKGLLIPH 41
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BLAST of mRNA_M-pyrifera_M_contig94206.21755.1 vs. uniprot
Match: E6MKI1_9FIRM (Uncharacterized protein (Fragment) n=1 Tax=Pseudoramibacter alactolyticus ATCC 23263 TaxID=887929 RepID=E6MKI1_9FIRM)

HSP 1 Score: 49.7 bits (117), Expect = 1.000e-6
Identity = 28/51 (54.90%), Postives = 31/51 (60.78%), Query Frame = 2 
Query:   20 FRAVVPRQRADYPRVTHPSAAVLATEV-TFSLDLHVLSLPLTFALSQDQTL 169
            F  V+P+ RA Y RVTHP A     +   F  DLHVLS P  F LSQDQTL
Sbjct:    2 FPEVIPKSRAGYSRVTHPFATRAPHKSRAFPFDLHVLSTPPAFVLSQDQTL 52
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BLAST of mRNA_M-pyrifera_M_contig94206.21755.1 vs. uniprot
Match: A0A854PNY7_9BURK (Uncharacterized protein n=1 Tax=Achromobacter sp. KAs 3-5 TaxID=1915388 RepID=A0A854PNY7_9BURK)

HSP 1 Score: 48.5 bits (114), Expect = 4.180e-6
Identity = 31/58 (53.45%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:    1 YAVLATLSSCCPPPKGRLSTCYSPVRRCTSHRSDVLA--RLACVKPPANVRSEPGSNS 168
            YAVLATLS   PP  G       P    T H+++V A  RLACV+ PA+V+SEPGSNS
Sbjct:   11 YAVLATLSRSYPPLLGTFRYITHPFA--TRHQTEVRAAVRLACVRHPASVQSEPGSNS 66
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BLAST of mRNA_M-pyrifera_M_contig94206.21755.1 vs. uniprot
Match: A0A0N4ZCW5_PARTI (Uncharacterized protein n=1 Tax=Parastrongyloides trichosuri TaxID=131310 RepID=A0A0N4ZCW5_PARTI)

HSP 1 Score: 46.2 bits (108), Expect = 2.610e-5
Identity = 27/56 (48.21%), Postives = 33/56 (58.93%), Query Frame = 1 
Query:    1 YAVLATLSSCCPPPKGRLSTCYSPVRRCTSHRSDVLARLACVKPPANVRSEPGSNS 168
            Y VLA +S C    +GR      P    ++  S+   RLACVKP A+VRSEPGSNS
Sbjct:    3 YPVLAHVSMCYSEEQGRFPRVTHP----SATNSEEFVRLACVKPAASVRSEPGSNS 54
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BLAST of mRNA_M-pyrifera_M_contig94206.21755.1 vs. uniprot
Match: A0A2Z4HGD5_9EUKA (Uncharacterized protein n=1 Tax=Cyanophora sudae TaxID=1522369 RepID=A0A2Z4HGD5_9EUKA)

HSP 1 Score: 46.2 bits (108), Expect = 5.300e-5
Identity = 25/46 (54.35%), Postives = 29/46 (63.04%), Query Frame = 2 
Query:   35 PRQRADYPRVTHPSAAVLATEVTFSLDLHVLSLPLTFALSQDQTLH 172
            P  +  + RVTHPSA  +      S DLHVLS+P  F LSQDQTLH
Sbjct:   46 PPPKGRFSRVTHPSATKILRS---SFDLHVLSIPPAFILSQDQTLH 88
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig94206.21755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A328C7V9_9DELT1.560e-1168.09Uncharacterized protein n=2 Tax=Lujinxingia litora... [more]
B0TIG3_HELMI7.950e-863.41Conserved domain protein n=1 Tax=Heliobacterium mo... [more]
E6MKI1_9FIRM1.000e-654.90Uncharacterized protein (Fragment) n=1 Tax=Pseudor... [more]
A0A854PNY7_9BURK4.180e-653.45Uncharacterized protein n=1 Tax=Achromobacter sp. ... [more]
A0A0N4ZCW5_PARTI2.610e-548.21Uncharacterized protein n=1 Tax=Parastrongyloides ... [more]
A0A2Z4HGD5_9EUKA5.300e-554.35Uncharacterized protein n=1 Tax=Cyanophora sudae T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig94206contigM-pyrifera_M_contig94206:566..743 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size178
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816856.1402926-CDS-M-pyrifera_M_contig94206:566..7431622816856.1402926-CDS-M-pyrifera_M_contig94206:566..743Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94206 567..743 -
1692278218.7712836-CDS-M-pyrifera_M_contig94206:566..7431692278218.7712836-CDS-M-pyrifera_M_contig94206:566..743Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94206 567..743 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig94206.21755.1prot_M-pyrifera_M_contig94206.21755.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig94206 567..743 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig94206.21755.1

>prot_M-pyrifera_M_contig94206.21755.1 ID=prot_M-pyrifera_M_contig94206.21755.1|Name=mRNA_M-pyrifera_M_contig94206.21755.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=59bp
YAVLATLSSCCPPPKGRLSTCYSPVRRCTSHRSDVLARLACVKPPANVRS
EPGSNSPLK
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mRNA from alignment at M-pyrifera_M_contig94206:566..743-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig94206.21755.1 ID=mRNA_M-pyrifera_M_contig94206.21755.1|Name=mRNA_M-pyrifera_M_contig94206.21755.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=178bp|location=Sequence derived from alignment at M-pyrifera_M_contig94206:566..743- (Macrocystis pyrifera P11B4 male)
TATGCGGTATTAGCAACCCTTTCGAGCTGTTGTCCCCCGCCAAAGGGCAG
ATTATCCACGTGTTACTCACCCGTCCGCCGCTGTACTAGCCACCGAAGTG
ACGTTCTCGCTCGACTTGCATGTGTTAAGCCTCCCGCTAACGTTCGCTCT
GAGCCAGGATCAAACTCTCCACTTAAAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig94206:566..743-

>mRNA_M-pyrifera_M_contig94206.21755.1 ID=mRNA_M-pyrifera_M_contig94206.21755.1|Name=mRNA_M-pyrifera_M_contig94206.21755.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig94206:566..743- (Macrocystis pyrifera P11B4 male)
TATGCGGTATTAGCAACCCTTTCGAGCTGTTGTCCCCCGCCAAAGGGCAG
ATTATCCACGTGTTACTCACCCGTCCGCCGCTGTACTAGCCACCGAAGTG
ACGTTCTCGCTCGACTTGCATGTGTTAAGCCTCCCGCTAACGTTCGCTCT
GAGCCAGGATCAAACTCTCCACTTAAATATGCGGTATTAGCAACCCTTTC
GAGCTGTTGTCCCCCGCCAAAGGGCAGATTATCCACGTGTTACTCACCCG
TCCGCCGCTGTACTAGCCACCGAAGTGACGTTCTCGCTCGACTTGCATGT
GTTAAGCCTCCCGCTAACGTTCGCTCTGAGCCAGGATCAAACTCTCCACT
TAAA
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