mRNA_M-pyrifera_M_contig942.21749.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig942.21749.1
Unique NamemRNA_M-pyrifera_M_contig942.21749.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig942.21749.1 vs. uniprot
Match: Q8QNQ6_ESV1K (EsV-1-3 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNQ6_ESV1K)

HSP 1 Score: 94.0 bits (232), Expect = 1.090e-19
Identity = 63/147 (42.86%), Postives = 86/147 (58.50%), Query Frame = 1 
Query:    4 ATMGLNATKPLLPPVHKLGIVYLKEPLTDAEEHLHTARLALKKLEEAQEDRNLDEEVVYRLKMRLYEAMEQLQEKEQGYFARRYISHSKP-VVHGWQNRVTLMIQNFYKTSEHDARYVQQVSAEFHQDAVHSINLLHIMTTTIRDMN 441
            A +GLN +KPLLPPVH L ++YLKEPLTDAE+ LH AR+ALK LE A  D N         +  LY+AM +LQ KE  YFA RYI   KP ++ GW+     +     K  E   + V + ++  HQDA+ + +  +     +RDM+
Sbjct:   30 AGIGLNPSKPLLPPVHNLRMIYLKEPLTDAEKDLHAARVALKLLETADNDVN---------RKALYKAMAKLQGKEAQYFATRYIGRGKPQILRGWKTHYFSV-----KVGELLHKSVMRHTST-HQDAIDAADGTYYAAEDLRDMD 161
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BLAST of mRNA_M-pyrifera_M_contig942.21749.1 vs. uniprot
Match: Q8QNQ5_ESV1K (EsV-1-4 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNQ5_ESV1K)

HSP 1 Score: 93.2 bits (230), Expect = 4.690e-19
Identity = 73/236 (30.93%), Postives = 111/236 (47.03%), Query Frame = 1 
Query:    4 ATMGLNATKPLLPPVHKLGIVYLKEPLTDAEEHLHTARLALKKLEEAQEDRNLDEEVVYRLKMRLYEAMEQLQEKEQGYFARRYISHSKPVVHGWQ-NRVTLMIQNFYKTSEHDARYVQQVSAEFHQDAVH------SINLLHIMTTTIRDMNNLCYDAVTGARLKELPLPTLRREQEELVENLHDMHTLYRNIKQLPDNDPAKEKSLDEVEQRYHAAAIIVRIADNMIRNEWDLP 690
            A +GLN +KPLLPPVH L ++YLKEP  DAE HLH AR+ALK ++       L            Y AM +L+  E+ YFARRY    K ++ GW   +    I+    T+ +    +        Q   H      +I+  +  ++ + +MN+  Y ++ G RL   P  T   +   L   +  +    R +  LPD+D  K+ SL  ++     A I  R+A  +  +  DLP
Sbjct:   54 AGIGLNPSKPLLPPVHNLRMIYLKEPFGDAEIHLHDARVALKSVQNGGPTAPL------------YAAMAKLEVAERDYFARRYFDGDKAILKGWNAEKFKQKIEELINTAANKLTAITVPGTTNTQPGYHISARGAAISAANA-SSRLNNMNDKWYFSIGGNRLPTKP-STFSTDLTALERAIKTIKNHLRVVLTLPDSDTTKQASLTSIKASLRHAEICQRLARLVEDDRCDLP 275
[Close]
BLAST of mRNA_M-pyrifera_M_contig942.21749.1 vs. uniprot
Match: Q8QNQ4_ESV1K (EsV-1-5 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNQ4_ESV1K)

HSP 1 Score: 87.0 bits (214), Expect = 1.310e-16
Identity = 48/98 (48.98%), Postives = 64/98 (65.31%), Query Frame = 1 
Query:   10 MGLNATKPLLPPVHKLGIVYLKEPLTDAEEHLHTARLALKKLEEAQEDRNLDEEVVYRLKMRLYEAMEQLQEKEQGYFARRYISHSKPVVHGWQNRVT 303
            +G+N    LLPPVH +G++ L+E LTDAE  LH AR+ALK LEEA    +  +         LY AM +LQ+KEQ YFARRY+  +K V+ GW N+V+
Sbjct:   10 IGINPANTLLPPVHNVGMIILREELTDAENDLHAARVALKTLEEAGASGDTSD---------LYTAMWKLQKKEQAYFARRYLQTNKAVLRGWHNQVS 98
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig942.21749.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Q8QNQ6_ESV1K1.090e-1942.86EsV-1-3 n=1 Tax=Ectocarpus siliculosus virus 1 (is... [more]
Q8QNQ5_ESV1K4.690e-1930.93EsV-1-4 n=1 Tax=Ectocarpus siliculosus virus 1 (is... [more]
Q8QNQ4_ESV1K1.310e-1648.98EsV-1-5 n=1 Tax=Ectocarpus siliculosus virus 1 (is... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig942contigM-pyrifera_M_contig942:25753..26466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size714
Cds size714
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816855.9311373-CDS-M-pyrifera_M_contig942:25752..264661622816855.9311373-CDS-M-pyrifera_M_contig942:25752..26466Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig942 25753..26466 +
1692278218.6685174-CDS-M-pyrifera_M_contig942:25752..264661692278218.6685174-CDS-M-pyrifera_M_contig942:25752..26466Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig942 25753..26466 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig942.21749.1prot_M-pyrifera_M_contig942.21749.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig942 25753..26466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig942.21749.1

>prot_M-pyrifera_M_contig942.21749.1 ID=prot_M-pyrifera_M_contig942.21749.1|Name=mRNA_M-pyrifera_M_contig942.21749.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=238bp
MATMGLNATKPLLPPVHKLGIVYLKEPLTDAEEHLHTARLALKKLEEAQE
DRNLDEEVVYRLKMRLYEAMEQLQEKEQGYFARRYISHSKPVVHGWQNRV
TLMIQNFYKTSEHDARYVQQVSAEFHQDAVHSINLLHIMTTTIRDMNNLC
YDAVTGARLKELPLPTLRREQEELVENLHDMHTLYRNIKQLPDNDPAKEK
SLDEVEQRYHAAAIIVRIADNMIRNEWDLPSSHLPPM*
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mRNA from alignment at M-pyrifera_M_contig942:25753..26466+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig942.21749.1 ID=mRNA_M-pyrifera_M_contig942.21749.1|Name=mRNA_M-pyrifera_M_contig942.21749.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig942:25753..26466+ (Macrocystis pyrifera P11B4 male)
ATGGCCACCATGGGCCTCAATGCCACCAAACCTCTCTTGCCACCCGTCCA
CAAATTGGGCATTGTCTATCTCAAAGAGCCACTGACCGACGCAGAGGAAC
ACTTGCACACTGCGCGATTGGCACTCAAAAAGCTGGAGGAAGCCCAAGAA
GACCGAAACCTGGATGAAGAAGTTGTATACCGGCTAAAAATGCGGCTTTA
CGAGGCAATGGAACAACTCCAGGAAAAGGAGCAGGGGTATTTCGCACGAC
GATACATCTCTCACAGCAAGCCCGTGGTACACGGTTGGCAAAACCGTGTC
ACCCTAATGATCCAAAATTTTTACAAAACTTCCGAACATGATGCTCGATA
TGTCCAGCAAGTCAGCGCAGAATTCCACCAAGACGCCGTACATTCCATTA
ATTTGTTACACATCATGACCACGACTATTCGTGATATGAACAACCTGTGC
TACGACGCTGTCACCGGTGCACGCCTGAAAGAGCTTCCCCTACCAACACT
TCGTCGGGAACAAGAAGAACTAGTGGAAAACCTTCACGATATGCACACGC
TCTACCGTAACATTAAACAGCTTCCCGACAACGATCCCGCAAAAGAAAAA
AGCCTCGATGAGGTCGAGCAACGCTACCATGCCGCCGCCATAATCGTCCG
CATTGCCGACAATATGATCAGGAATGAATGGGATCTGCCATCTTCACATT
TGCCCCCCATGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig942:25753..26466+

>mRNA_M-pyrifera_M_contig942.21749.1 ID=mRNA_M-pyrifera_M_contig942.21749.1|Name=mRNA_M-pyrifera_M_contig942.21749.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1428bp|location=Sequence derived from alignment at M-pyrifera_M_contig942:25753..26466+ (Macrocystis pyrifera P11B4 male)
ATGGCCACCATGGGCCTCAATGCCACCAAACCTCTCTTGCCACCCGTCCA
CAAATTGGGCATTGTCTATCTCAAAGAGCCACTGACCGACGCAGAGGAAC
ACTTGCACACTGCGCGATTGGCACTCAAAAAGCTGGAGGAAGCCCAAGAA
GACCGAAACCTGGATGAAGAAGTTGTATACCGGCTAAAAATGCGGCTTTA
CGAGGCAATGGAACAACTCCAGGAAAAGGAGCAGGGGTATTTCGCACGAC
GATACATCTCTCACAGCAAGCCCGTGGTACACGGTTGGCAAAACCGTGTC
ACCCTAATGATCCAAAATTTTTACAAAACTTCCGAACATGATGCTCGATA
TGTCCAGCAAGTCAGCGCAGAATTCCACCAAGACGCCGTACATTCCATTA
ATTTGTTACACATCATGACCACGACTATTCGTGATATGAACAACCTGTGC
TACGACGCTGTCACCGGTGCACGCCTGAAAGAGCTTCCCCTACCAACACT
TCGTCGGGAACAAGAAGAACTAGTGGAAAACCTTCACGATATGCACACGC
TCTACCGTAACATTAAACAGCTTCCCGACAACGATCCCGCAAAAGAAAAA
AGCCTCGATGAGGTCGAGCAACGCTACCATGCCGCCGCCATAATCGTCCG
CATTGCCGACAATATGATCAGGAATGAATGGGATCTGCCATCTTCACATT
TGCCCCCCATGTAGATGGCCACCATGGGCCTCAATGCCACCAAACCTCTC
TTGCCACCCGTCCACAAATTGGGCATTGTCTATCTCAAAGAGCCACTGAC
CGACGCAGAGGAACACTTGCACACTGCGCGATTGGCACTCAAAAAGCTGG
AGGAAGCCCAAGAAGACCGAAACCTGGATGAAGAAGTTGTATACCGGCTA
AAAATGCGGCTTTACGAGGCAATGGAACAACTCCAGGAAAAGGAGCAGGG
GTATTTCGCACGACGATACATCTCTCACAGCAAGCCCGTGGTACACGGTT
GGCAAAACCGTGTCACCCTAATGATCCAAAATTTTTACAAAACTTCCGAA
CATGATGCTCGATATGTCCAGCAAGTCAGCGCAGAATTCCACCAAGACGC
CGTACATTCCATTAATTTGTTACACATCATGACCACGACTATTCGTGATA
TGAACAACCTGTGCTACGACGCTGTCACCGGTGCACGCCTGAAAGAGCTT
CCCCTACCAACACTTCGTCGGGAACAAGAAGAACTAGTGGAAAACCTTCA
CGATATGCACACGCTCTACCGTAACATTAAACAGCTTCCCGACAACGATC
CCGCAAAAGAAAAAAGCCTCGATGAGGTCGAGCAACGCTACCATGCCGCC
GCCATAATCGTCCGCATTGCCGACAATATGATCAGGAATGAATGGGATCT
GCCATCTTCACATTTGCCCCCCATGTAG
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