mRNA_M-pyrifera_M_contig942.21743.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig942.21743.1
Unique NamemRNA_M-pyrifera_M_contig942.21743.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig942.21743.1 vs. uniprot
Match: Q8QNG8_ESV1K (EsV-1-110 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNG8_ESV1K)

HSP 1 Score: 186 bits (471), Expect = 1.010e-56
Identity = 113/197 (57.36%), Postives = 127/197 (64.47%), Query Frame = 1 
Query:    1 MAIRSVDEIINLSDSSKNPEKLAFKDLIKHIDPRIRDRASRHTSLHFNIPGILWGQPVFDAKRVEKMITRHYRSIGFTCVRLAPREILIKWGDASDDEDSQAGSHPDXXXXXXXXXXXXXXXXXXXXXXXXXXTASSDEAHGAHGAADSSETXXXXXXXXXXXXXXXDASKTKCVTVEQLPLSKRLSIINNQLHQDM 591
            MAIRSVDEIINLSDSSKNPEKLA+KDL++HIDPRIR RA RH+SLHF IPGILWGQPVFDA RVEKMI  HY+ +GF CVRLA REILI+WG+     D + G H                            T SSD              XXXXXXXXXX       + TKCVTVEQ+PLSKRLS +NNQL Q++
Sbjct:    1 MAIRSVDEIINLSDSSKNPEKLAYKDLVQHIDPRIRGRAPRHSSLHFKIPGILWGQPVFDADRVEKMIVHHYKRMGFQCVRLAKREILIQWGEGGQ-RDEEVGRHDSTEDS----------------------TESSDTDSAXXXXXXXXXXXXXXXXXXXXDGEDSRENNTKCVTVEQIPLSKRLSAVNNQLQQNL 174
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BLAST of mRNA_M-pyrifera_M_contig942.21743.1 vs. uniprot
Match: D8LPD9_ECTSI (EsV-1-110 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPD9_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 9.860e-52
Identity = 122/196 (62.24%), Postives = 135/196 (68.88%), Query Frame = 1 
Query:    1 MAIRSVDEIINLSDSSKNPEKLAFKDLIKHIDPRIRDRASRHTSLHFNIPGILWGQPVFDAKRVEKMITRHYRSIGFTCVRLAPREILIKWGDASDDEDSQAGSHPDXXXXXXXXXXXXXXXXXXXXXXXXXXTASSDEAHGAHGAADSSETXXXXXXXXXXXXXXXDASKTKCVTVEQLPLSKRLSIINNQLHQD 588
            MAIRSVDEI+NLSDSSKNPEKLAFKDL++HIDPRIR RA RH SLHF IPG+LWG PVFDA RVEKMI  HY+ +GF C RLA REILI+WG+              XXXXXXXXXXXXXXXXXXXXXXXXXX         +H                         +KTKCVTVEQ+PLSKRLSI+NNQL Q+
Sbjct:    1 MAIRSVDEIVNLSDSSKNPEKLAFKDLVQHIDPRIRVRAPRHNSLHFKIPGMLWGHPVFDADRVEKMIVHHYKRMGFQCARLAKREILIQWGEGGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSH------------------------ENKTKCVTVEQIPLSKRLSIVNNQLQQN 172
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BLAST of mRNA_M-pyrifera_M_contig942.21743.1 vs. uniprot
Match: Q6XM08_9PHYC (FirrV-1-B28 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM08_9PHYC)

HSP 1 Score: 73.6 bits (179), Expect = 5.370e-13
Identity = 45/108 (41.67%), Postives = 59/108 (54.63%), Query Frame = 1 
Query:    7 IRSVDEIINLSDSSKNPEKLAFKDLIKHIDPRIRDRA-SRHTSLHFNIPGILWGQPVFDAKRVEKMITRHYRSIGFTCVRLAPREILIKWG-----DASDDEDSQAGS 312
            IRSV+EI+ +S+S K P+K+ ++ LIK ID  IR RA  +    HF IP I+  +P F+  RV K I  HY  IGF  V L      + WG     D    EDS+  S
Sbjct:    5 IRSVEEIVGISESGKTPDKMVYRYLIKQIDRLIRSRALEQRYDAHFEIPAIVMFKPHFNRLRVAKKICAHYTKIGFI-VELTGFHARLAWGKGTQTDKKKTEDSKHSS 111
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BLAST of mRNA_M-pyrifera_M_contig942.21743.1 vs. uniprot
Match: B5LWC4_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWC4_9PHYC)

HSP 1 Score: 72.4 bits (176), Expect = 1.350e-12
Identity = 32/91 (35.16%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:    7 IRSVDEIINLSDSSKNPEKLAFKDLIKHIDPRIRDRA-SRHTSLHFNIPGILWGQPVFDAKRVEKMITRHYRSIGFTCVRLAPREILIKWG 276
            IRSV+EI++LS+S + P+K+A+K L++ +D  +R RA  +     F +P ++  QP F+ ++V + + +HY +IGF C +++   + ++WG
Sbjct:    5 IRSVEEIVSLSESGRTPDKMAYKYLVQQVDRLLRARALDQQHDASFEVPAMVLFQPHFNREKVAQRLFKHYENIGFAC-KMSGYNVNLEWG 94
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig942.21743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Q8QNG8_ESV1K1.010e-5657.36EsV-1-110 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPD9_ECTSI9.860e-5262.24EsV-1-110 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Q6XM08_9PHYC5.370e-1341.67FirrV-1-B28 n=1 Tax=Feldmannia irregularis virus a... [more]
B5LWC4_9PHYC1.350e-1235.16Uncharacterized protein n=1 Tax=Feldmannia species... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig942contigM-pyrifera_M_contig942:16563..17156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-110
Ec32 orthologEc-06_005720.1
Exons1
Model size594
Cds size594
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816855.730332-CDS-M-pyrifera_M_contig942:16562..171561622816855.730332-CDS-M-pyrifera_M_contig942:16562..17156Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig942 16563..17156 +
1692278218.5540268-CDS-M-pyrifera_M_contig942:16562..171561692278218.5540268-CDS-M-pyrifera_M_contig942:16562..17156Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig942 16563..17156 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig942.21743.1prot_M-pyrifera_M_contig942.21743.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig942 16563..17156 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig942.21743.1

>prot_M-pyrifera_M_contig942.21743.1 ID=prot_M-pyrifera_M_contig942.21743.1|Name=mRNA_M-pyrifera_M_contig942.21743.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=198bp
MAIRSVDEIINLSDSSKNPEKLAFKDLIKHIDPRIRDRASRHTSLHFNIP
GILWGQPVFDAKRVEKMITRHYRSIGFTCVRLAPREILIKWGDASDDEDS
QAGSHPDDDSDGDTDTDGDTGTDADTDGDTGTETASSDEAHGAHGAADSS
ETETSSSGTTDSDGDGDDASKTKCVTVEQLPLSKRLSIINNQLHQDM*
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mRNA from alignment at M-pyrifera_M_contig942:16563..17156+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig942.21743.1 ID=mRNA_M-pyrifera_M_contig942.21743.1|Name=mRNA_M-pyrifera_M_contig942.21743.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig942:16563..17156+ (Macrocystis pyrifera P11B4 male)
ATGGCCATACGATCTGTCGATGAGATTATTAACCTTTCAGATTCCTCAAA
AAACCCGGAAAAACTTGCATTCAAAGACCTCATCAAACATATAGACCCTC
GCATTAGAGACCGCGCGTCGAGACACACCAGCCTGCACTTCAACATACCC
GGAATCCTATGGGGCCAACCGGTTTTCGACGCCAAACGCGTGGAGAAAAT
GATTACCCGCCACTACAGGAGCATCGGGTTCACATGTGTCAGGCTGGCCC
CGAGAGAAATCCTCATCAAATGGGGCGACGCCTCCGACGACGAGGACAGC
CAAGCTGGCAGCCACCCCGACGACGATTCAGACGGCGACACTGACACCGA
CGGCGACACTGGAACAGACGCCGACACCGACGGCGACACTGGGACCGAAA
CGGCCTCTTCCGATGAGGCGCATGGAGCACACGGAGCCGCCGATTCATCC
GAGACAGAGACAAGCAGCTCCGGTACCACAGACTCCGACGGAGACGGCGA
TGATGCAAGCAAAACCAAGTGCGTCACCGTCGAACAACTCCCCCTGAGCA
AGAGGCTCTCAATCATCAACAATCAGCTGCATCAAGACATGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig942:16563..17156+

>mRNA_M-pyrifera_M_contig942.21743.1 ID=mRNA_M-pyrifera_M_contig942.21743.1|Name=mRNA_M-pyrifera_M_contig942.21743.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1188bp|location=Sequence derived from alignment at M-pyrifera_M_contig942:16563..17156+ (Macrocystis pyrifera P11B4 male)
ATGGCCATACGATCTGTCGATGAGATTATTAACCTTTCAGATTCCTCAAA
AAACCCGGAAAAACTTGCATTCAAAGACCTCATCAAACATATAGACCCTC
GCATTAGAGACCGCGCGTCGAGACACACCAGCCTGCACTTCAACATACCC
GGAATCCTATGGGGCCAACCGGTTTTCGACGCCAAACGCGTGGAGAAAAT
GATTACCCGCCACTACAGGAGCATCGGGTTCACATGTGTCAGGCTGGCCC
CGAGAGAAATCCTCATCAAATGGGGCGACGCCTCCGACGACGAGGACAGC
CAAGCTGGCAGCCACCCCGACGACGATTCAGACGGCGACACTGACACCGA
CGGCGACACTGGAACAGACGCCGACACCGACGGCGACACTGGGACCGAAA
CGGCCTCTTCCGATGAGGCGCATGGAGCACACGGAGCCGCCGATTCATCC
GAGACAGAGACAAGCAGCTCCGGTACCACAGACTCCGACGGAGACGGCGA
TGATGCAAGCAAAACCAAGTGCGTCACCGTCGAACAACTCCCCCTGAGCA
AGAGGCTCTCAATCATCAACAATCAGCTGCATCAAGACATGTGAATGGCC
ATACGATCTGTCGATGAGATTATTAACCTTTCAGATTCCTCAAAAAACCC
GGAAAAACTTGCATTCAAAGACCTCATCAAACATATAGACCCTCGCATTA
GAGACCGCGCGTCGAGACACACCAGCCTGCACTTCAACATACCCGGAATC
CTATGGGGCCAACCGGTTTTCGACGCCAAACGCGTGGAGAAAATGATTAC
CCGCCACTACAGGAGCATCGGGTTCACATGTGTCAGGCTGGCCCCGAGAG
AAATCCTCATCAAATGGGGCGACGCCTCCGACGACGAGGACAGCCAAGCT
GGCAGCCACCCCGACGACGATTCAGACGGCGACACTGACACCGACGGCGA
CACTGGAACAGACGCCGACACCGACGGCGACACTGGGACCGAAACGGCCT
CTTCCGATGAGGCGCATGGAGCACACGGAGCCGCCGATTCATCCGAGACA
GAGACAAGCAGCTCCGGTACCACAGACTCCGACGGAGACGGCGATGATGC
AAGCAAAACCAAGTGCGTCACCGTCGAACAACTCCCCCTGAGCAAGAGGC
TCTCAATCATCAACAATCAGCTGCATCAAGACATGTGA
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