mRNA_M-pyrifera_M_contig94119.21729.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig94119.21729.1
Unique NamemRNA_M-pyrifera_M_contig94119.21729.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig94119.21729.1 vs. uniprot
Match: A0A2D6IL10_9BACT (Uncharacterized protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A2D6IL10_9BACT)

HSP 1 Score: 79.3 bits (194), Expect = 1.160e-16
Identity = 41/81 (50.62%), Postives = 62/81 (76.54%), Query Frame = 1 
Query:  103 KVAEEDIQHMLRMKEERMEVEKERFEVRVLADKDKEVAAIKDEYRDKMESELKTQIERSNHMYAELLGRLPNINVEMRGNV 345
            KV+EEDI+HM+RMKEE++ +E ++ E+     K+KE+AAIKD+YRDK+E  L+ +  R+  MY E+L RLPN+NV+++G  
Sbjct:   44 KVSEEDIKHMVRMKEEKLALEYDKKEIDWFKAKEKEIAAIKDQYRDKIEKNLEKESARTQEMYNEILKRLPNVNVKLQGTT 124
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig94119.21729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2D6IL10_9BACT1.160e-1650.62Uncharacterized protein n=1 Tax=bacterium TaxID=18... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig94119contigM-pyrifera_M_contig94119:6..362 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size357
Cds size357
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816854.888688-CDS-M-pyrifera_M_contig94119:5..3621622816854.888688-CDS-M-pyrifera_M_contig94119:5..362Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94119 6..362 +
1692278218.065084-CDS-M-pyrifera_M_contig94119:5..3621692278218.065084-CDS-M-pyrifera_M_contig94119:5..362Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94119 6..362 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig94119.21729.1prot_M-pyrifera_M_contig94119.21729.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig94119 6..362 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig94119.21729.1

>prot_M-pyrifera_M_contig94119.21729.1 ID=prot_M-pyrifera_M_contig94119.21729.1|Name=mRNA_M-pyrifera_M_contig94119.21729.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
EKIQLQDQLAAVMRQMETDTASAVAKLEAVQQKHKVAEEDIQHMLRMKEE
RMEVEKERFEVRVLADKDKEVAAIKDEYRDKMESELKTQIERSNHMYAEL
LGRLPNINVEMRGNVGGS*
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mRNA from alignment at M-pyrifera_M_contig94119:6..362+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig94119.21729.1 ID=mRNA_M-pyrifera_M_contig94119.21729.1|Name=mRNA_M-pyrifera_M_contig94119.21729.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=357bp|location=Sequence derived from alignment at M-pyrifera_M_contig94119:6..362+ (Macrocystis pyrifera P11B4 male)
GAGAAAATCCAGCTACAAGACCAGCTTGCGGCGGTCATGCGGCAGATGGA
AACCGATACCGCCTCGGCGGTCGCGAAACTTGAAGCGGTTCAGCAGAAAC
ACAAAGTCGCGGAAGAAGATATCCAGCACATGCTTCGAATGAAAGAAGAA
CGCATGGAGGTGGAAAAAGAACGCTTCGAGGTCCGCGTGCTGGCAGACAA
GGATAAGGAAGTCGCCGCGATCAAGGACGAGTACCGCGACAAAATGGAAT
CCGAGCTGAAAACGCAGATCGAGCGGTCGAACCACATGTACGCAGAGCTG
CTGGGACGACTGCCAAACATCAACGTCGAGATGCGAGGGAATGTCGGTGG
CTCTTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig94119:6..362+

>mRNA_M-pyrifera_M_contig94119.21729.1 ID=mRNA_M-pyrifera_M_contig94119.21729.1|Name=mRNA_M-pyrifera_M_contig94119.21729.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig94119:6..362+ (Macrocystis pyrifera P11B4 male)
GAGAAAATCCAGCTACAAGACCAGCTTGCGGCGGTCATGCGGCAGATGGA
AACCGATACCGCCTCGGCGGTCGCGAAACTTGAAGCGGTTCAGCAGAAAC
ACAAAGTCGCGGAAGAAGATATCCAGCACATGCTTCGAATGAAAGAAGAA
CGCATGGAGGTGGAAAAAGAACGCTTCGAGGTCCGCGTGCTGGCAGACAA
GGATAAGGAAGTCGCCGCGATCAAGGACGAGTACCGCGACAAAATGGAAT
CCGAGCTGAAAACGCAGATCGAGCGGTCGAACCACATGTACGCAGAGCTG
CTGGGACGACTGCCAAACATCAACGTCGAGATGCGAGGGAATGTCGGTGG
CTCTTAGGAGAAAATCCAGCTACAAGACCAGCTTGCGGCGGTCATGCGGC
AGATGGAAACCGATACCGCCTCGGCGGTCGCGAAACTTGAAGCGGTTCAG
CAGAAACACAAAGTCGCGGAAGAAGATATCCAGCACATGCTTCGAATGAA
AGAAGAACGCATGGAGGTGGAAAAAGAACGCTTCGAGGTCCGCGTGCTGG
CAGACAAGGATAAGGAAGTCGCCGCGATCAAGGACGAGTACCGCGACAAA
ATGGAATCCGAGCTGAAAACGCAGATCGAGCGGTCGAACCACATGTACGC
AGAGCTGCTGGGACGACTGCCAAACATCAACGTCGAGATGCGAGGGAATG
TCGGTGGCTCTTAG
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