mRNA_M-pyrifera_M_contig94114.21728.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig94114.21728.1
Unique NamemRNA_M-pyrifera_M_contig94114.21728.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig94114.21728.1 vs. uniprot
Match: A0A6I6A7A4_9PLAN (Uncharacterized protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A6I6A7A4_9PLAN)

HSP 1 Score: 264 bits (675), Expect = 2.490e-87
Identity = 134/138 (97.10%), Postives = 135/138 (97.83%), Query Frame = 1
Query:  184 KDHDEGWSTKQVITLVMIGIAMFGWACAAAAYAHAKEGWRSNEVERFAEEHGEELESDLRSTRRAAARSAMIKTAGRALMDFIGNAFKQLPNCLAVIAFTFSERLWLIILFAVLEAGALGLGFVMEKVGEGFVETPRY 597
            KDHDEGWSTKQVI LVMIGIAMFGWACAAAAYAHAKEGWRSNEVERFAEEHG+ELESD RSTRRAAARSAMIKTA RALMDFIGNAFKQLPNCLAVIAFTFSERLWLIILFAVLEAGALGLGFVMEKVGEGFVETPRY
Sbjct:   62 KDHDEGWSTKQVIMLVMIGIAMFGWACAAAAYAHAKEGWRSNEVERFAEEHGDELESDFRSTRRAAARSAMIKTAARALMDFIGNAFKQLPNCLAVIAFTFSERLWLIILFAVLEAGALGLGFVMEKVGEGFVETPRY 199          
BLAST of mRNA_M-pyrifera_M_contig94114.21728.1 vs. uniprot
Match: A0A517V9B8_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A517V9B8_9PLAN)

HSP 1 Score: 205 bits (522), Expect = 2.730e-64
Identity = 103/131 (78.63%), Postives = 116/131 (88.55%), Query Frame = 1
Query:  205 STKQVITLVMIGIAMFGWACAAAAYAHAKEGWRSNEVERFAEEHGEELESDLRSTRRAAARSAMIKTAGRALMDFIGNAFKQLPNCLAVIAFTFSERLWLIILFAVLEAGALGLGFVMEKVGEGFVETPRY 597
            ST ++I LVM+GIA+FGWACAAAAYAHAKEGWRSNE ERFA E+G ELESDL  TRR AARSAMIKTA  ALMDFIGN F+Q+PN  AV+AFTFSERLWL+ILFAVLE GA+GLG++MEKVGEGFV+TP Y
Sbjct:   53 STHKLIALVMLGIALFGWACAAAAYAHAKEGWRSNETERFAAENGGELESDLHLTRRRAARSAMIKTAFVALMDFIGNTFRQIPNFFAVVAFTFSERLWLVILFAVLEGGAVGLGYIMEKVGEGFVDTPEY 183          
BLAST of mRNA_M-pyrifera_M_contig94114.21728.1 vs. uniprot
Match: A0A2E2C9W3_9PLAN (Uncharacterized protein n=3 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C9W3_9PLAN)

HSP 1 Score: 205 bits (521), Expect = 3.750e-64
Identity = 103/135 (76.30%), Postives = 118/135 (87.41%), Query Frame = 1
Query:  193 DEGWSTKQVITLVMIGIAMFGWACAAAAYAHAKEGWRSNEVERFAEEHGEELESDLRSTRRAAARSAMIKTAGRALMDFIGNAFKQLPNCLAVIAFTFSERLWLIILFAVLEAGALGLGFVMEKVGEGFVETPRY 597
            D+  ST ++I LVM+GIA+FGWACAAAAYAHAKEGWRSNE ERFA E+G ELESD RSTRR AA +AM KTA  +LMDFIGNAF+Q+PN  AVIAFTFSERLWL+ILFAVLE GALGLG+VMEKVGEGF++ P+Y
Sbjct:   48 DDEPSTHKLIALVMLGIALFGWACAAAAYAHAKEGWRSNETERFAAENGGELESDFRSTRRRAAGAAMFKTAFNSLMDFIGNAFRQIPNVFAVIAFTFSERLWLVILFAVLEGGALGLGYVMEKVGEGFIDPPQY 182          
BLAST of mRNA_M-pyrifera_M_contig94114.21728.1 vs. uniprot
Match: A6CFK1_9PLAN (Uncharacterized protein n=3 Tax=Gimesia maris TaxID=122 RepID=A6CFK1_9PLAN)

HSP 1 Score: 199 bits (506), Expect = 7.100e-62
Identity = 97/131 (74.05%), Postives = 117/131 (89.31%), Query Frame = 1
Query:  205 STKQVITLVMIGIAMFGWACAAAAYAHAKEGWRSNEVERFAEEHGEELESDLRSTRRAAARSAMIKTAGRALMDFIGNAFKQLPNCLAVIAFTFSERLWLIILFAVLEAGALGLGFVMEKVGEGFVETPRY 597
            ST ++I LVM+GIA+FGWACAAAAYAH KEGWR+NE ERFA E+G +LES+L +TRR AARSAM+KTA  +LMDFIGNAF+Q+PN  +V+AFTFSERLWL+ILFAVLE GA+GLG++MEKVGEGFV+TP Y
Sbjct:   52 STHKLIALVMLGIAVFGWACAAAAYAHVKEGWRNNETERFAAENGGDLESELHTTRRRAARSAMLKTAFVSLMDFIGNAFRQIPNFFSVVAFTFSERLWLVILFAVLEGGAVGLGYIMEKVGEGFVDTPEY 182          
BLAST of mRNA_M-pyrifera_M_contig94114.21728.1 vs. uniprot
Match: A0A518FKP3_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518FKP3_9PLAN)

HSP 1 Score: 197 bits (502), Expect = 4.950e-61
Identity = 98/117 (83.76%), Postives = 109/117 (93.16%), Query Frame = 1
Query:  247 MFGWACAAAAYAHAKEGWRSNEVERFAEEHGEELESDLRSTRRAAARSAMIKTAGRALMDFIGNAFKQLPNCLAVIAFTFSERLWLIILFAVLEAGALGLGFVMEKVGEGFVETPRY 597
            +FGWAC+AAAYAHAKEGWRSNE ERFA E+G++LESD R TRR AA++AMIKTA  ALMDFIGNAFKQLPNC+AVIAFTFSERLWL+ILFAVLEAGA+GLG+VMEKVGE FVETPRY
Sbjct:   84 LFGWACSAAAYAHAKEGWRSNEAERFAAENGDDLESDSRLTRRRAAKTAMIKTAFHALMDFIGNAFKQLPNCVAVIAFTFSERLWLVILFAVLEAGAVGLGYVMEKVGESFVETPRY 200          
BLAST of mRNA_M-pyrifera_M_contig94114.21728.1 vs. uniprot
Match: A0A518A512_9PLAN (Uncharacterized protein n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A512_9PLAN)

HSP 1 Score: 197 bits (502), Expect = 4.950e-61
Identity = 120/200 (60.00%), Postives = 134/200 (67.00%), Query Frame = 1
Query:    1 MTEDPRPRRKRXXPPESAGDSVSRXXXXXXXX-RKVARAEEDAPPVRKNKATKSGXXXXXXXKDHDEGWSTKQVITLVMIGIAMFGWACAAAAYAHAKEGWRSNEVERFAEEHGEELESDLRSTRRAAARSAMIKTAGRALMDFIGNAFKQLPNCLAVIAFTFSERLWLIILFAVLEAGALGLGFVMEKVGEGFVETPRY 597
            MT++PRPRRKRX  P S G++            RK   +++   PV+K   TKSG  XXXXX                               YAHAKEGWRSNEVERFA E+G +LESD R TRRAAA+SAMIKTA RA MDFIGNAFKQ+PNC AVIAFTFSERLWL+ILFAVLEAGALGLGF+MEKVGE FVETPRY
Sbjct:    1 MTDEPRPRRKRXRRPASEGEAAGNSPRRRKPATRKTPHSQDSEVPVKKKSGTKSGKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYAHAKEGWRSNEVERFAAENGGDLESDSRLTRRAAAKSAMIKTAVRAQMDFIGNAFKQIPNCFAVIAFTFSERLWLVILFAVLEAGALGLGFIMEKVGESFVETPRY 200          
BLAST of mRNA_M-pyrifera_M_contig94114.21728.1 vs. uniprot
Match: A0A517VYW0_9PLAN (Uncharacterized protein n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VYW0_9PLAN)

HSP 1 Score: 171 bits (434), Expect = 5.150e-51
Identity = 85/131 (64.89%), Postives = 106/131 (80.92%), Query Frame = 1
Query:  205 STKQVITLVMIGIAMFGWACAAAAYAHAKEGWRSNEVERFAEEHGEELESDLRSTRRAAARSAMIKTAGRALMDFIGNAFKQLPNCLAVIAFTFSERLWLIILFAVLEAGALGLGFVMEKVGEGFVETPRY 597
            ST +VI ++M+ IA+FGWACAAAAYAHAKEGWRSNE E+F EE+  E  ++ R  RR+ AR AMIK    +L DF+ NAF+Q+PN  +VIAFTF+ERLWLIILFA LE GA+ LG++MEKVGEGFV+TP+Y
Sbjct:   49 STHKVIAMLMVAIALFGWACAAAAYAHAKEGWRSNEAEKFIEENSAEDPNETRFGRRSRARGAMIKNVFVSLKDFVFNAFRQIPNVFSVIAFTFTERLWLIILFACLEGGAVFLGYIMEKVGEGFVDTPKY 179          
BLAST of mRNA_M-pyrifera_M_contig94114.21728.1 vs. uniprot
Match: A0A518IB93_9PLAN (Uncharacterized protein n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IB93_9PLAN)

HSP 1 Score: 160 bits (405), Expect = 1.190e-46
Identity = 79/131 (60.31%), Postives = 98/131 (74.81%), Query Frame = 1
Query:  205 STKQVITLVMIGIAMFGWACAAAAYAHAKEGWRSNEVERFAEEHGEELESDLRSTRRAAARSAMIKTAGRALMDFIGNAFKQLPNCLAVIAFTFSERLWLIILFAVLEAGALGLGFVMEKVGEGFVETPRY 597
            ST +VI ++M+ IA+FGWACAAAAYAHA+EGWR+NE ERF EE+  +   + R  RR   R AM+KT   AL DF+ NAF+Q+PN  +VIAF F  RLWLIILF  LE  A+GLG++MEKVGE F ETP+Y
Sbjct:   47 STHKVIGMLMVAIALFGWACAAAAYAHAEEGWRANEAERFIEENSTDDLDETRFARRNRVRGAMVKTVFVALKDFVWNAFRQIPNAFSVIAFNFKHRLWLIILFGCLEGAAVGLGYLMEKVGESFTETPKY 177          
BLAST of mRNA_M-pyrifera_M_contig94114.21728.1 vs. uniprot
Match: A0A3D3RBF3_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A3D3RBF3_9PLAN)

HSP 1 Score: 119 bits (299), Expect = 2.180e-31
Identity = 64/129 (49.61%), Postives = 84/129 (65.12%), Query Frame = 1
Query:  226 LVMIGIAMFGWACAAAAYAHAKEGWRSN-----EVERFAEEHGEELESDLRSTRRAAARSAMIKTAGRALMDFIGNAFKQLPNCLAVIAFTFSERLWLIILFAVLEAGALGLGFVMEKVGEGFVETPRY 597
            ++M+ IA FGWA AAAAYAH KEGWR       E +R+  ++ +  E      R+  A          +  DFI NA +Q+PN ++VI+F F  RLWL+ILFAVLE GA+GLG++MEKVGEGFV+TP Y
Sbjct:    1 MLMLAIAAFGWAFAAAAYAHEKEGWRQESSNLTETDRYGVQYDKRFEEAGNFRRQFRA----------SWKDFIWNAIRQIPNAVSVISFNFQHRLWLVILFAVLEGGAVGLGYIMEKVGEGFVDTPEY 119          
BLAST of mRNA_M-pyrifera_M_contig94114.21728.1 vs. uniprot
Match: A0A517REA3_9PLAN (Uncharacterized protein n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517REA3_9PLAN)

HSP 1 Score: 106 bits (265), Expect = 3.480e-26
Identity = 65/133 (48.87%), Postives = 84/133 (63.16%), Query Frame = 1
Query:  184 KDHDEGWSTKQVITLVMIGIAMFGWACAAAAYAHAKEGWR-----SNEVERFAEEHGEELESDLRSTRRAAARSAMIKTAGRALMDFIGNAFKQLPNCLAVIAFTFSERLWLIILFAVLEAGALGLGFVMEKV 567
            K+ D   ST +VI ++M+ IA FGWA  AAAYAH++EGWR     +N  +  A    E +E D  + RRA   S         L DFI NAF Q+PN ++VI+F F+ RLWL+ILFA LEAGALGLG+ M K+
Sbjct:    4 KNTDGEASTTKVIVMLMLAIAFFGWAFFAAAYAHSEEGWRQADSSTNVADPTAVGQDERME-DAGNIRRAKKSS---------LRDFIWNAFSQIPNVVSVISFNFANRLWLVILFACLEAGALGLGYAMSKI 126          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig94114.21728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6I6A7A4_9PLAN2.490e-8797.10Uncharacterized protein n=6 Tax=Gimesia TaxID=1649... [more]
A0A517V9B8_9PLAN2.730e-6478.63Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
A0A2E2C9W3_9PLAN3.750e-6476.30Uncharacterized protein n=3 Tax=Planctomycetaceae ... [more]
A6CFK1_9PLAN7.100e-6274.05Uncharacterized protein n=3 Tax=Gimesia maris TaxI... [more]
A0A518FKP3_9PLAN4.950e-6183.76Uncharacterized protein n=1 Tax=Gimesia panareensi... [more]
A0A518A512_9PLAN4.950e-6160.00Uncharacterized protein n=2 Tax=Gimesia panareensi... [more]
A0A517VYW0_9PLAN5.150e-5164.89Uncharacterized protein n=1 Tax=Gimesia aquarii Ta... [more]
A0A518IB93_9PLAN1.190e-4660.31Uncharacterized protein n=1 Tax=Gimesia fumaroli T... [more]
A0A3D3RBF3_9PLAN2.180e-3149.61Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A0A517REA3_9PLAN3.480e-2648.87Uncharacterized protein n=1 Tax=Gimesia alba TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig94114contigM-pyrifera_M_contig94114:48..647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size600
Cds size600
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816854.85009-CDS-M-pyrifera_M_contig94114:47..6471622816854.85009-CDS-M-pyrifera_M_contig94114:47..647Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94114 48..647 +
1692278218.05473-CDS-M-pyrifera_M_contig94114:47..6471692278218.05473-CDS-M-pyrifera_M_contig94114:47..647Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94114 48..647 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig94114.21728.1prot_M-pyrifera_M_contig94114.21728.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig94114 48..647 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig94114.21728.1

>prot_M-pyrifera_M_contig94114.21728.1 ID=prot_M-pyrifera_M_contig94114.21728.1|Name=mRNA_M-pyrifera_M_contig94114.21728.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=200bp
MTEDPRPRRKRRRPPESAGDSVSRKPRRRPASRKVARAEEDAPPVRKNKA
TKSGRKKKKKRKDHDEGWSTKQVITLVMIGIAMFGWACAAAAYAHAKEGW
RSNEVERFAEEHGEELESDLRSTRRAAARSAMIKTAGRALMDFIGNAFKQ
LPNCLAVIAFTFSERLWLIILFAVLEAGALGLGFVMEKVGEGFVETPRY*
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mRNA from alignment at M-pyrifera_M_contig94114:48..647+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig94114.21728.1 ID=mRNA_M-pyrifera_M_contig94114.21728.1|Name=mRNA_M-pyrifera_M_contig94114.21728.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig94114:48..647+ (Macrocystis pyrifera P11B4 male)
ATGACCGAAGACCCCCGTCCTCGTCGTAAACGCAGGCGTCCTCCCGAGAG TGCGGGAGACTCTGTCAGTCGCAAACCCCGACGCCGGCCTGCCAGCCGAA AAGTAGCACGAGCCGAAGAGGATGCGCCGCCGGTACGGAAAAATAAGGCG ACGAAATCCGGTCGCAAGAAGAAAAAGAAACGAAAAGACCACGATGAGGG CTGGTCGACCAAGCAGGTGATCACACTGGTGATGATCGGCATTGCGATGT TCGGCTGGGCCTGTGCTGCCGCCGCGTATGCGCATGCGAAAGAGGGCTGG CGGTCTAATGAAGTGGAACGTTTCGCTGAGGAGCATGGCGAAGAACTGGA GTCAGACCTCCGTTCGACCAGGCGAGCGGCTGCCCGCAGTGCGATGATCA AAACCGCGGGACGTGCCTTGATGGATTTCATCGGAAACGCGTTTAAACAG CTTCCCAACTGCCTGGCGGTGATCGCCTTCACGTTTTCGGAAAGGCTGTG GCTGATTATTCTGTTTGCCGTACTGGAAGCCGGCGCGTTGGGCCTGGGCT TTGTAATGGAAAAGGTAGGGGAAGGTTTCGTGGAGACGCCGCGATATTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig94114:48..647+

>mRNA_M-pyrifera_M_contig94114.21728.1 ID=mRNA_M-pyrifera_M_contig94114.21728.1|Name=mRNA_M-pyrifera_M_contig94114.21728.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1200bp|location=Sequence derived from alignment at M-pyrifera_M_contig94114:48..647+ (Macrocystis pyrifera P11B4 male)
ATGACCGAAGACCCCCGTCCTCGTCGTAAACGCAGGCGTCCTCCCGAGAG
TGCGGGAGACTCTGTCAGTCGCAAACCCCGACGCCGGCCTGCCAGCCGAA
AAGTAGCACGAGCCGAAGAGGATGCGCCGCCGGTACGGAAAAATAAGGCG
ACGAAATCCGGTCGCAAGAAGAAAAAGAAACGAAAAGACCACGATGAGGG
CTGGTCGACCAAGCAGGTGATCACACTGGTGATGATCGGCATTGCGATGT
TCGGCTGGGCCTGTGCTGCCGCCGCGTATGCGCATGCGAAAGAGGGCTGG
CGGTCTAATGAAGTGGAACGTTTCGCTGAGGAGCATGGCGAAGAACTGGA
GTCAGACCTCCGTTCGACCAGGCGAGCGGCTGCCCGCAGTGCGATGATCA
AAACCGCGGGACGTGCCTTGATGGATTTCATCGGAAACGCGTTTAAACAG
CTTCCCAACTGCCTGGCGGTGATCGCCTTCACGTTTTCGGAAAGGCTGTG
GCTGATTATTCTGTTTGCCGTACTGGAAGCCGGCGCGTTGGGCCTGGGCT
TTGTAATGGAAAAGGTAGGGGAAGGTTTCGTGGAGACGCCGCGATATTGA
ATGACCGAAGACCCCCGTCCTCGTCGTAAACGCAGGCGTCCTCCCGAGAG
TGCGGGAGACTCTGTCAGTCGCAAACCCCGACGCCGGCCTGCCAGCCGAA
AAGTAGCACGAGCCGAAGAGGATGCGCCGCCGGTACGGAAAAATAAGGCG
ACGAAATCCGGTCGCAAGAAGAAAAAGAAACGAAAAGACCACGATGAGGG
CTGGTCGACCAAGCAGGTGATCACACTGGTGATGATCGGCATTGCGATGT
TCGGCTGGGCCTGTGCTGCCGCCGCGTATGCGCATGCGAAAGAGGGCTGG
CGGTCTAATGAAGTGGAACGTTTCGCTGAGGAGCATGGCGAAGAACTGGA
GTCAGACCTCCGTTCGACCAGGCGAGCGGCTGCCCGCAGTGCGATGATCA
AAACCGCGGGACGTGCCTTGATGGATTTCATCGGAAACGCGTTTAAACAG
CTTCCCAACTGCCTGGCGGTGATCGCCTTCACGTTTTCGGAAAGGCTGTG
GCTGATTATTCTGTTTGCCGTACTGGAAGCCGGCGCGTTGGGCCTGGGCT
TTGTAATGGAAAAGGTAGGGGAAGGTTTCGTGGAGACGCCGCGATATTGA
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