mRNA_M-pyrifera_M_contig941.21721.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig941.21721.1
Unique NamemRNA_M-pyrifera_M_contig941.21721.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig941.21721.1 vs. uniprot
Match: A0A6H5L731_9PHAE (Glyco_trans_2-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L731_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 2.300e-54
Identity = 78/102 (76.47%), Postives = 90/102 (88.24%), Query Frame = 1
Query:    1 AFCFTGHKFRDMGGFPDIVMMEDFEVVRRIRKEEQAGRGKILVLDQAALCAPRRWEQPGNSPFVNFWRNWFFLFLYTRMGVSPAKIFRMYYGRHPDPVIESD 306
            AFCFT HKF +MGGFPDIVMMEDFEVVRR+RKEE AG G I VLD+AALC PRRWEQPGN+PFVNFWRNW FLFLY+++G SP +IFR+YYGR PDP++ +D
Sbjct:  196 AFCFTAHKFAEMGGFPDIVMMEDFEVVRRLRKEELAGGGHIHVLDEAALCNPRRWEQPGNNPFVNFWRNWMFLFLYSKLGFSPEQIFRLYYGRDPDPIVVAD 297          
BLAST of mRNA_M-pyrifera_M_contig941.21721.1 vs. uniprot
Match: D7FSW3_ECTSI (Glycosyl transferase, group 2 family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSW3_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 6.130e-32
Identity = 60/93 (64.52%), Postives = 69/93 (74.19%), Query Frame = 1
Query:    1 AFCFTGHKFRDMGGFPDIVMMEDFEVVRRIRKEEQAGRGKILVLDQAALCAPRRWEQPGNSPFVNFWRNWFFLFLYTRMGVSPAKIFRMYYGR 279
            AFCFT HKF +MGGFPDIVMMEDFEVVRR+RKEE AG G I VLD+AALC PRRWE+ G   F +  +N  F  LY    +S  +IFR+YYGR
Sbjct:   77 AFCFTAHKFAEMGGFPDIVMMEDFEVVRRLRKEELAGGGHIHVLDEAALCNPRRWEKQG--VFRSSLQNICFALLYVVGNLSADQIFRLYYGR 167          
BLAST of mRNA_M-pyrifera_M_contig941.21721.1 vs. uniprot
Match: A0A7S3UY86_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3UY86_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.630e-13
Identity = 34/83 (40.96%), Postives = 50/83 (60.24%), Query Frame = 1
Query:   25 FRDMGGFPDIVMMEDFEVVRRIRKEEQAGRGKILVLDQAALCAPRRWEQPGNSPFVNFWRNWFFLFLYTRMGVSPAKIFRMYY 273
            ++++GG   + MMEDFE+V R+R+      G+I +L + A C+PRRWE+ G +   N   NW F+  Y   G+SP  IF  YY
Sbjct:   18 YKEVGGVKRLKMMEDFELVSRVRRIALENGGRIEILPEHAKCSPRRWEKNGIAK--NSVLNWTFVAAYVWAGISPDTIFEYYY 98          
BLAST of mRNA_M-pyrifera_M_contig941.21721.1 vs. uniprot
Match: A0A5A8DKP3_CAFRO (Glyco_trans_2-like domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DKP3_CAFRO)

HSP 1 Score: 74.3 bits (181), Expect = 2.580e-13
Identity = 37/85 (43.53%), Postives = 51/85 (60.00%), Query Frame = 1
Query:   22 KFRDMGGFPDIVMMEDFEVVRRIRKEEQAGRGKILVLDQAALCAPRRWEQPGNSPFVNFWRNWFFLFLYTRMGVSPAKIFRMYYG 276
            ++  +G  P +VMMEDFE VRR R +  A   +I VL Q ALC+ RRWE  G  P       WF +F YT +G +  +I+++YYG
Sbjct:  212 RWAQLGPMPSLVMMEDFEFVRRARTQAVAEGRRIAVLPQVALCSGRRWEALG-VPATTLSNQWF-VFAYTALGFTDRQIYKLYYG 294          
BLAST of mRNA_M-pyrifera_M_contig941.21721.1 vs. uniprot
Match: A0A5A8E156_CAFRO (Glyco_trans_2-like domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E156_CAFRO)

HSP 1 Score: 74.3 bits (181), Expect = 2.690e-13
Identity = 37/85 (43.53%), Postives = 51/85 (60.00%), Query Frame = 1
Query:   22 KFRDMGGFPDIVMMEDFEVVRRIRKEEQAGRGKILVLDQAALCAPRRWEQPGNSPFVNFWRNWFFLFLYTRMGVSPAKIFRMYYG 276
            ++  +G  P +VMMEDFE VRR R +  A   +I VL Q ALC+ RRWE  G  P       WF +F YT +G +  +I+++YYG
Sbjct:  212 RWAQLGPMPSLVMMEDFEFVRRARTQAVAEGRRIAVLPQVALCSGRRWEALG-VPATTLSNQWF-VFAYTALGFTDRQIYKLYYG 294          
BLAST of mRNA_M-pyrifera_M_contig941.21721.1 vs. uniprot
Match: A0A7S2RVS7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RVS7_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 3.570e-12
Identity = 37/95 (38.95%), Postives = 49/95 (51.58%), Query Frame = 1
Query:    1 AFCFTGHKFRDMGGFPDIVMMEDFEVVRRIRKEEQAGRGKILVLDQAALCAPRRWEQPGNSPFVNFWRNWFFLFLYTRMGVSPAKIFRMYYGRHP 285
            A   T  +F  +GGFPD+ MMEDFE+V+ +R+   AG G I  LD  A C  RRW +  N  +     N   +  Y   G SP +I+  YY   P
Sbjct:  213 AMAITRQRFDALGGFPDVPMMEDFELVQALRRAGAAGAGYIKTLDAPATCGARRWVK--NKVWWCNAMNQVIMIAYVYFGFSPTQIYTWYYQSTP 305          
BLAST of mRNA_M-pyrifera_M_contig941.21721.1 vs. uniprot
Match: A0A7S3PIZ7_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PIZ7_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 5.490e-12
Identity = 34/83 (40.96%), Postives = 50/83 (60.24%), Query Frame = 1
Query:   25 FRDMGGFPDIVMMEDFEVVRRIRKEEQAGRGKILVLDQAALCAPRRWEQPGNSPFVNFWRNWFFLFLYTRMGVSPAKIFRMYY 273
            ++++GG   + MMEDFE+V R+R+      G+I +L + A C+PRRWE+ G +   N   NW F+  Y   G+SP  IF  YY
Sbjct:  237 YKEVGGVKRLKMMEDFELVSRVRRIALENGGRIEILPEHAKCSPRRWEKNGIAK--NSVLNWTFVAAYVWAGISPDTIFEYYY 317          
BLAST of mRNA_M-pyrifera_M_contig941.21721.1 vs. uniprot
Match: A0A7S2CQU7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CQU7_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 7.800e-12
Identity = 35/96 (36.46%), Postives = 52/96 (54.17%), Query Frame = 1
Query:    1 AFCFTGHKFRDMGGFPDIVMMEDFEVVRRIRKEEQAGRGKILVLDQAALCAPRRWEQPGNSPFVNFWR----NWFFLFLYTRMGVSPAKIFRMYYG 276
            A   T  +   +GG PD+ +MEDFE+V+++R+   AG G+I  LD   LC+ RRW++ G       WR    N   +  Y   G +PA+I+  YY 
Sbjct:  220 AIAMTRQRLDAVGGVPDVPIMEDFELVQKLRRIGAAGSGRIKTLDAKVLCSGRRWQEKG------VWRTNLLNQVIMTAYVYFGFTPAQIYSWYYS 309          
BLAST of mRNA_M-pyrifera_M_contig941.21721.1 vs. uniprot
Match: A0A4S3JC46_9EURO (Glyco_trans_2-like domain-containing protein n=1 Tax=Aspergillus tanneri TaxID=1220188 RepID=A0A4S3JC46_9EURO)

HSP 1 Score: 67.8 bits (164), Expect = 4.000e-11
Identity = 38/100 (38.00%), Postives = 54/100 (54.00%), Query Frame = 1
Query:    1 AFCFTGHKFRDMGGFPDIVMMEDFEVVRRIRKEEQAGRGKILVLDQAALCAPRRWEQPG-------NSPFVNFWRNWFFLFLYTRMGVSPAKIFRMYYGR 279
            A+  T   F  +GGFPD+ +MED E++RR+R     GR  I VL++  + +PRRW++ G       N   V+ W +          GVS A I+R YYGR
Sbjct:  221 AYFLTRRTFEAIGGFPDVPIMEDVELLRRVRSRVWDGR--ISVLEEQVVTSPRRWDEKGVLWNTVLNQFLVSAWLS----------GVSHATIYRWYYGR 308          
BLAST of mRNA_M-pyrifera_M_contig941.21721.1 vs. uniprot
Match: A0A356HWH1_9DELT (Glycosyltransferase n=2 Tax=unclassified Deltaproteobacteria TaxID=122706 RepID=A0A356HWH1_9DELT)

HSP 1 Score: 66.2 bits (160), Expect = 6.740e-11
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = 1
Query:   22 KFRDMGGFPDIVMMEDFEVVRRIRKEEQAGRGKILVLDQAALCAPRRWEQPGNSPFVNFWRNWFFLFLYTRMGVSPAKIFRMYYGR 279
            KF  +GGF  + +MED +++RR+R+      G + +L +  L + RRW + G        +NWF+LFLY  +GVSP +I+R+YY R
Sbjct:  155 KFFSIGGFRGLPIMEDVDLIRRLRRH-----GTVKLLKEKVLTSQRRWYKKGLISTTL--KNWFYLFLYY-IGVSPERIYRLYYKR 232          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig941.21721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L731_9PHAE2.300e-5476.47Glyco_trans_2-like domain-containing protein n=1 T... [more]
D7FSW3_ECTSI6.130e-3264.52Glycosyl transferase, group 2 family protein n=1 T... [more]
A0A7S3UY86_9STRA1.630e-1340.96Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A5A8DKP3_CAFRO2.580e-1343.53Glyco_trans_2-like domain-containing protein n=3 T... [more]
A0A5A8E156_CAFRO2.690e-1343.53Glyco_trans_2-like domain-containing protein n=2 T... [more]
A0A7S2RVS7_9STRA3.570e-1238.95Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3PIZ7_9STRA5.490e-1240.96Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S2CQU7_9STRA7.800e-1236.46Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A4S3JC46_9EURO4.000e-1138.00Glyco_trans_2-like domain-containing protein n=1 T... [more]
A0A356HWH1_9DELT6.740e-1139.53Glycosyltransferase n=2 Tax=unclassified Deltaprot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig941contigM-pyrifera_M_contig941:13932..15209 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.6
Seed ortholog evalue1.7e-24
Seed eggNOG ortholog2880.D7FSW3
Hectar predicted targeting categoryother localisation
EggNOG OGs2E0YR@1,2S8BV@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size318
Cds size318
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig941.21721.1prot_M-pyrifera_M_contig941.21721.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig941 13932..15209 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816854.4422333-CDS-M-pyrifera_M_contig941:13931..139971622816854.4422333-CDS-M-pyrifera_M_contig941:13931..13997Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig941 13932..13997 +
1692278217.7809882-CDS-M-pyrifera_M_contig941:13931..139971692278217.7809882-CDS-M-pyrifera_M_contig941:13931..13997Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig941 13932..13997 +
1622816854.4590638-CDS-M-pyrifera_M_contig941:14419..145141622816854.4590638-CDS-M-pyrifera_M_contig941:14419..14514Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig941 14420..14514 +
1692278217.8052967-CDS-M-pyrifera_M_contig941:14419..145141692278217.8052967-CDS-M-pyrifera_M_contig941:14419..14514Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig941 14420..14514 +
1622816854.4708796-CDS-M-pyrifera_M_contig941:15052..152091622816854.4708796-CDS-M-pyrifera_M_contig941:15052..15209Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig941 15053..15209 +
1692278217.8159-CDS-M-pyrifera_M_contig941:15052..152091692278217.8159-CDS-M-pyrifera_M_contig941:15052..15209Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig941 15053..15209 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig941.21721.1

>prot_M-pyrifera_M_contig941.21721.1 ID=prot_M-pyrifera_M_contig941.21721.1|Name=mRNA_M-pyrifera_M_contig941.21721.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
AFCFTGHKFRDMGGFPDIVMMEDFEVVRRIRKEEQAGRGKILVLDQAALC
APRRWEQPGNSPFVNFWRNWFFLFLYTRMGVSPAKIFRMYYGRHPDPVIE
SDVVS*
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mRNA from alignment at M-pyrifera_M_contig941:13932..15209+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig941.21721.1 ID=mRNA_M-pyrifera_M_contig941.21721.1|Name=mRNA_M-pyrifera_M_contig941.21721.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1278bp|location=Sequence derived from alignment at M-pyrifera_M_contig941:13932..15209+ (Macrocystis pyrifera P11B4 male)
GCGTTCTGCTTCACCGGACACAAGTTCAGGGACATGGGAGGCTTCCCAGA CATCGTGATGATGGAGGTGACTAAAAACGAAGGTTTAGTGGTCGCTCTTG TGATAGCGAACCGGACGGAGGTTGTCGTTGTTGTTGTGTTCCAATGTCTG TGTTGCGCTGGTTTTAGGTGCGTCCGGATACGCGCGCCGATGATTGGTAA TACGCTCTGTTACGTACCTGGTACCTCGTTATTTCCCTCGCTTGTAGATA TTGCTGCGATATGCCGTGCTGAGAGATGCAGCGATGCACCTGGAAGCACA CCCTACGCCGAGAGCTTCGGCCTGAACGTTTCAAGGTTGATTGTCTGTTT TGCATCCTGTTGCTGCCATAGTCGAAGTGGCAGCAGTAGATTTGCCCTTG CGAAATGTCCGTGTCGGATTCAAATGTTTCACTATTCGCATGCGCTGACA TTGTGCCTTGCTGTCCACATGCGTCCTGCACGTTCCAGGACTTTGAAGTG GTCAGGCGGATTCGCAAGGAGGAGCAAGCTGGGAGAGGGAAGATTCTCGT CCTGGACCAGGCGGCACTGTGCGCCCCCAGAAGGTACGCAGGGGTTGAAC ATGTTGCTATGTATATTTATCGGGTTTCACTCGTGTAAGGTGTTCATCGT CGTTCCAGGTCGGGCCCTTCCCGACACGTTGGTACTGCCGATTTTGCTTC TCGTCGGTGAATGCTTTGTCGAAAGCGGCGAAACAGCGAATCAGATTGCA CCGAGGGAGATGCATCTGCAGTAACCCCTTTTCGGCCGTAGTCAACGTAC AGCAGTATTAGGAGTAGTTGGAGCTGTGCGGCTGTAATATACGTCAAGAT GCACTACTGTAGCGTGCCTACACAGCTGTTGACGGCGGGCTGGCTGATCC GCGTGGTCTGAACAGCCCGACCAGCCCAAGGAGCGTCGTACGCGTGACAC ACGCACGCACGCTTCAGGTGCCGAACCTGATCGCAGCGTCTGCCCCAACC TGCCCCGCACCATTCGCTCTACCGTTCATGCGCGCTCGGTGCCTGCCCTA CATTTGCGCGGGACCGCCTACCGACTACCGACGGGGTGCGATCGCCACCA TGCCACCCTCCACGCAAATAGGTGGGAACAGCCAGGCAACAGCCCCTTTG TGAATTTCTGGAGAAACTGGTTTTTTTTGTTTCTCTATACGAGAATGGGA GTTTCGCCGGCTAAGATTTTCCGCATGTACTACGGCCGGCACCCCGACCC CGTCATCGAAAGTGACGTCGTGTCTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig941:13932..15209+

>mRNA_M-pyrifera_M_contig941.21721.1 ID=mRNA_M-pyrifera_M_contig941.21721.1|Name=mRNA_M-pyrifera_M_contig941.21721.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig941:13932..15209+ (Macrocystis pyrifera P11B4 male)
GCGTTCTGCTTCACCGGACACAAGTTCAGGGACATGGGAGGCTTCCCAGA
CATCGTGATGATGGAGGCGTTCTGCTTCACCGGACACAAGTTCAGGGACA
TGGGAGGCTTCCCAGACATCGTGATGATGGAGGACTTTGAAGTGGTCAGG
CGGATTCGCAAGGAGGAGCAAGCTGGGAGAGGGAAGATTCTCGTCCTGGA
CCAGGCGGCACTGTGCGCCCCCAGAAGGACTTTGAAGTGGTCAGGCGGAT
TCGCAAGGAGGAGCAAGCTGGGAGAGGGAAGATTCTCGTCCTGGACCAGG
CGGCACTGTGCGCCCCCAGAAGGTGGGAACAGCCAGGCAACAGCCCCTTT
GTGAATTTCTGGAGAAACTGGTTTTTTTTGTTTCTCTATACGAGAATGGG
AGTTTCGCCGGCTAAGATTTTCCGCATGTACTACGGCCGGCACCCCGACC
CCGTCATCGAAAGTGACGTCGTGTCTTGAGTGGGAACAGCCAGGCAACAG
CCCCTTTGTGAATTTCTGGAGAAACTGGTTTTTTTTGTTTCTCTATACGA
GAATGGGAGTTTCGCCGGCTAAGATTTTCCGCATGTACTACGGCCGGCAC
CCCGACCCCGTCATCGAAAGTGACGTCGTGTCTTGA
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