mRNA_M-pyrifera_M_contig941.21719.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig941.21719.1
Unique NamemRNA_M-pyrifera_M_contig941.21719.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig941.21719.1 vs. uniprot
Match: D7FSW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSW1_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 1.750e-24
Identity = 64/103 (62.14%), Postives = 80/103 (77.67%), Query Frame = 1 
Query:    1 MADDDLYGDLDTSADALKIKGVSASCASNLTSTTKSLSKRKMNVLMSKEKRLREENEQLAKNISCLFNTAQAEIARKDKWIDQLRLELQVATDKIR-RDRARR 306
            MA++DLYGDLDTS DALKIKG+ A  +++  S  + L +R  + L  KEK LR ENEQLAKNISCLFNTA+AEIARK+ WI++LR ELQVA  K++ +D ARR
Sbjct:    1 MAEEDLYGDLDTSVDALKIKGLEAELSTS-ESLRRGLEERLASALR-KEKVLRAENEQLAKNISCLFNTAKAEIARKETWIERLRQELQVAEGKLKQKDGARR 101
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BLAST of mRNA_M-pyrifera_M_contig941.21719.1 vs. uniprot
Match: A0A1V9Y677_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y677_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.200e-6
Identity = 44/94 (46.81%), Postives = 53/94 (56.38%), Query Frame = 1 
Query:    1 MADDDLYGDLDTSADALKIKGVSASCASNLTSTTKSLSKRKMNVLMSKEKRLREENEQLAKNISCLFNTAQAEIARKDKWIDQLRLELQVATDK 282
            MADDDLYGDLDTS   L    + A     L +  ++L K +   L      L   N+ L +N+S LF TAQ EIARKDK I  LR ELQ A +K
Sbjct:    1 MADDDLYGDLDTSVTGLSSVHLKAQLK-ELQAKHEALLK-EAGGLQHANATLGARNQVLERNMSVLFATAQTEIARKDKTIQSLREELQQAQEK 92
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig941.21719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSW1_ECTSI1.750e-2462.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1V9Y677_9STRA1.200e-646.81Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig941contigM-pyrifera_M_contig941:6623..10017 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_006580.1
Exons3
Model size654
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig941.21719.1prot_M-pyrifera_M_contig941.21719.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig941 6968..10017 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816854.32418-UTR-M-pyrifera_M_contig941:6622..69671622816854.32418-UTR-M-pyrifera_M_contig941:6622..6967Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig941 6623..6967 -
1692278217.6707084-UTR-M-pyrifera_M_contig941:6622..69671692278217.6707084-UTR-M-pyrifera_M_contig941:6622..6967Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig941 6623..6967 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816854.3377206-CDS-M-pyrifera_M_contig941:6967..71321622816854.3377206-CDS-M-pyrifera_M_contig941:6967..7132Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig941 6968..7132 -
1692278217.692177-CDS-M-pyrifera_M_contig941:6967..71321692278217.692177-CDS-M-pyrifera_M_contig941:6967..7132Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig941 6968..7132 -
1622816854.3481684-CDS-M-pyrifera_M_contig941:8869..89331622816854.3481684-CDS-M-pyrifera_M_contig941:8869..8933Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig941 8870..8933 -
1692278217.7087355-CDS-M-pyrifera_M_contig941:8869..89331692278217.7087355-CDS-M-pyrifera_M_contig941:8869..8933Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig941 8870..8933 -
1622816854.3589694-CDS-M-pyrifera_M_contig941:9937..100171622816854.3589694-CDS-M-pyrifera_M_contig941:9937..10017Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig941 9938..10017 -
1692278217.7219338-CDS-M-pyrifera_M_contig941:9937..100171692278217.7219338-CDS-M-pyrifera_M_contig941:9937..10017Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig941 9938..10017 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig941.21719.1

>prot_M-pyrifera_M_contig941.21719.1 ID=prot_M-pyrifera_M_contig941.21719.1|Name=mRNA_M-pyrifera_M_contig941.21719.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
MADDDLYGDLDTSADALKIKGVSASCASNLTSTTKSLSKRKMNVLMSKEK
RLREENEQLAKNISCLFNTAQAEIARKDKWIDQLRLELQVATDKIRRDRA
RR*
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mRNA from alignment at M-pyrifera_M_contig941:6623..10017-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig941.21719.1 ID=mRNA_M-pyrifera_M_contig941.21719.1|Name=mRNA_M-pyrifera_M_contig941.21719.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3395bp|location=Sequence derived from alignment at M-pyrifera_M_contig941:6623..10017- (Macrocystis pyrifera P11B4 male)
ATGGCGGACGACGACTTGTATGGGGATTTGGACACCTCAGCGGATGCTCT
GAAGATTAAGGGTGTGAGTGCCTCGTGCGCGTGCGTATGCGCCATTTTCG
CACATCGAGCAGGAGTGTCTAATACCTGGTAGCAAGTTGTTTCTTCCGGC
GTTTCTACGACTACCGCCACTTCATAAAACTTCAAGAGGATACGTATCAA
GAAGCAATTGACGAGCCGCTTGACTTGCATGCATTGAGCTATAATGGATG
CCCGTGAACTTTGCACCTGTTCTCGCCCCTCTCACGCCATCCCCTCTTCA
ATGCTCGAACTTCGTTACCGTGACTACTCTGCAGCTGGAGGCCGAAGTCT
TGAACTCAGAGAACCTGGCAAAGAGCTTGGGCGAGAAGCTTTCGGCCACT
CAGCAAAAGGCAAGCTACCTGGGAAAATGATCTATTAGAAGATCACCTGA
AACGGGAGTGCGACGTACGTAAGGGCACCTCGTAATGCAATTTCTATAAG
TGCATCGCATTGTCATGCGTGCAAGATGAATGCTTCCTCTGCGTGCAAGA
AACCCTCTGCAGAAAAGTACGCCACCCCCTCTTGACTAGGGATTAGCGTG
GGACACTTTTTTTCAGTCGTGAAGACTCTCCTTGCTCCATGCTCCCTACC
AACGAGAGATGCCGCAAGATAGCGAGGAACGATAGTACCAAGGACACTCG
CCACGGAACGACCCATGGCCTATCGCATTAGTAGTTCATGGAGTAACCCA
TGGGGTCAGCCACGGTTATACCACGGTGTGAGTCATATGGTTTCACCCTA
CGGGCTGACCCGTGCTCGACGCCACGGCTTCACCATAAAACACACCACGG
CATGCCCCATGGCATACACCATGGGTCGAACCACGGTCTGGATTTACCAT
GGGATGCCCCATGAGGTGCGCCATGATAGTGGACTACCCATGGCGAACCC
CACGGGTAGTACCGTGGCAGGTAGTCGCGTAACTGCTGTTCTAACGCTTA
GATTGGGTAGGCGTCGGGTTAACCTTTACCAATAGCCTAACGGACTAAGG
CGTCATGGTCAGGACATGGGTCGTTGGTCGTGAGTTCGAATCTCACGTCC
ACCACGAAATCGCTTTCTAAAAGAAAAATGAATGTCCTCATGTCGAAAGT
CTGAAAAAATACTTCTAGATCCCCAAAAATTGGAAACGCGTGTTGGTGGC
ACGTCGACCCATATATCCGATTCGTTCCACGGGGGGAGCGTGTTGTAGGG
CTTGGATTGGGTAAGCGATTGGTTAACCTTTTACCAATAGCCGAACGGAC
TAAGACCTTAACATAGCCCATTGCGATGTCCTTTGTCCATTGACGATGTG
ATGGTGAGACGTGCCATGGTCCACACCGTGGGGTTAGGGTTAGGTTTTCA
CCATAAAACGCCCCATGGGACACACCCTCTCACTAGCTGTCCATGGGTTG
CACCACGGTATACAACATATTGTGGGTTGACCCGTAGACGAAATGTCCAC
CCTGGCGGCATCATTGGGCACCATGGAATAAACGATGGCGTGCCCCATGA
TCCACCATGGCAAAGACCACGGGTCACGTGAAGGCCATGGGATGTGCCAT
GGTACCCACAATGGACCCATGGACTGTACTGGGTCCATTCCATGGCGCAC
GTTTTTTCCATGGGTTGCAGCATGGTCCATACCATGGCTTTCCGTGGTTG
GGTGTATGGTGTGCCCCATGGCCCTTACCATGGCTGACAATGGTTGGGTG
TATGGTGTGCCCCATAGCCCATACCATGGCTAACCATGATTAGGTTCATG
GTGTGCCTCGTGGTCTGTCCCACTAATGGATGTCACCCAATATTGTTTTC
TTTTCTCTGTTCACGGTTCCCCTGATACACACGGTCCAAGTGTTTTTTTG
TTTCCAGGTATATCCATATTTTCCTTTTCTTTCGTTTTCTTTGGAAGTGA
ACACACAGTAGTCGCCCTGTTACCCCAAGTCGGCACGTTTGTATTTAAGA
CGCGCAGTTGCACGTCTCAAAAAAGGGGGGGATTGTGTGGATACCAGGCC
CCTCCCCCCAGATTGTACCGCCTCATTCCACACAAGCTCAAGGTCATCAG
AGGTCCTCCAAACCGTTCCGTGAAGACCGCAGGCACCAAAACACCTCGGT
GTGTCCTCCACACCACAACCACACAAGAGAGAACCTGCCCGGGGCTCCGC
CTCACATTCCTGCTATTTGCAATTTGTTTAGTTTGCTGGCTTGTATGTGA
TCTGCCTTTCGTATCCAGCCGTTGGCGTTGCACTGTCTACTTTTCTTACC
AGTGAGTACGTTCTACATTTTTTCGAGGTATGTGTTCTGATCGTAGTTTG
TGACCAGAGGTTGCAGATACGTACAATATGTACCTCTTAAGGGTGAAGAA
TCAGCACGGACACTGGGATTTGCCGAATGTCGATAGGTCGGATTAACTCG
AAGAACACACACATACTCTGCATACGTAGCTTTGCATGAAAAGCCAGATT
TTTTCACCCCGCACAAGCAAGATCCAACATTGAAAAGCGCTTTTGCCCCG
TGGCGTGTGATAGCTGCGGTTGGACTTGCCTTGCTTTGCGCTTGATTTAA
CATGCTCTTTTAACATATAATTTTGGTATGTATATTTTGCCCGTCTCGAG
GAACTTCCGACCGGCTACGATCGAATGATAAGTGTAGTCAGTCTATTCAC
AGAGCTTGCAATCTTGAGAACCAAGCGATGTGGTCGTACTCACAGCTCAG
CTGGCGAATTTGTTAGCATGTGTAACTCGAACTTGTCAGCAAGTGCTGTT
TACTGCTGCTCTATACCCAACTCTAGAAAACCCGTCTGCTCCCTCGTCTA
ATTTTGATGGTGATCGTGTGATGATCGTGCTGCAGGAAAAGCGTCTGCGG
GAAGAAAATGAGCAGCTGGCGAAGAATATATCGTGCCTCTTCAACACCGC
CCAGGCTGAAATCGCTCGGAAGGACAAGTGGATTGATCAACTCCGGCTAG
AGCTGCAAGTCGCCACGGACAAGATTCGCCGTGATCGGGCCCGCCGATGA
CAGCAGCAGCATCAGCAGTTCCCTATGACACGCGCCTCGTGAGGCTCTGG
GCGCATGGGTTGCTCGAATCGTATGTCATGGTATACACGTAGAGGATGTT
CCGCAGGCAGTGGCAGGATGCCACCAGATGTGGAGGATGTTCCCCACGCA
GTGGTGTGCGCGCACGTACTCTGTGGTCAGACCACCTTTGTATGCCGCCG
ATGTACCTCGGTACCACCCCCAGCAGTGTTGGTTCGAAATACGGACGATA
TGCACGAGTATATGGCATCGCACCAGCAGCGATGGTACGGAGTGCACTAT
AGTATGATAAGAAATAGGGAAACGGAGAACGCGTTTTTTCTACGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig941:6623..10017-

>mRNA_M-pyrifera_M_contig941.21719.1 ID=mRNA_M-pyrifera_M_contig941.21719.1|Name=mRNA_M-pyrifera_M_contig941.21719.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig941:6623..10017- (Macrocystis pyrifera P11B4 male)
ATGGCGGACGACGACTTGTATGGGGATTTGGACACCTCAGCGGATGCTCT
GAAGATTAAGGGTGTGAGTGCCTCGTGCGCATGGCGGACGACGACTTGTA
TGGGGATTTGGACACCTCAGCGGATGCTCTGAAGATTAAGGGTGTGAGTG
CCTCGTGCGCTTCGAATCTCACGTCCACCACGAAATCGCTTTCTAAAAGA
AAAATGAATGTCCTCATGTCGAAATTCGAATCTCACGTCCACCACGAAAT
CGCTTTCTAAAAGAAAAATGAATGTCCTCATGTCGAAAGAAAAGCGTCTG
CGGGAAGAAAATGAGCAGCTGGCGAAGAATATATCGTGCCTCTTCAACAC
CGCCCAGGCTGAAATCGCTCGGAAGGACAAGTGGATTGATCAACTCCGGC
TAGAGCTGCAAGTCGCCACGGACAAGATTCGCCGTGATCGGGCCCGCCGA
TGAGAAAAGCGTCTGCGGGAAGAAAATGAGCAGCTGGCGAAGAATATATC
GTGCCTCTTCAACACCGCCCAGGCTGAAATCGCTCGGAAGGACAAGTGGA
TTGATCAACTCCGGCTAGAGCTGCAAGTCGCCACGGACAAGATTCGCCGT
GATCGGGCCCGCCGATGA
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