mRNA_M-pyrifera_M_contig94080.21713.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig94080.21713.1
Unique NamemRNA_M-pyrifera_M_contig94080.21713.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig94080.21713.1 vs. uniprot
Match: A0A7S4IK28_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IK28_9EUKA)

HSP 1 Score: 154 bits (388), Expect = 1.180e-42
Identity = 75/112 (66.96%), Postives = 89/112 (79.46%), Query Frame = 1 
Query:    1 LEPGSPFLWDLCHKDSLIGIEQQYFRPEEVMCTIIQGTQHYEKNLQSKVTRGDMRGTDGTVTVSGASLRIVKLGMNIIEETK-EPVIVQKSTADVALRLHPAHSHRSLIDSL 333
            LEP SPF+WDL  KD     E QYF P E+M TIIQGT+HY KN+Q+KVTRGDMRGTDGTVT+SGASLR V+  MN+    K + +++ KST+DVALRLHPAH+HRSLIDSL
Sbjct:   66 LEPNSPFIWDLAQKDVFQKEESQYFVPSEIMATIIQGTKHYPKNIQTKVTRGDMRGTDGTVTISGASLRAVRYSMNLCGGQKGKEILIDKSTSDVALRLHPAHTHRSLIDSL 177
[Close]
BLAST of mRNA_M-pyrifera_M_contig94080.21713.1 vs. uniprot
Match: A0A7S4IWQ4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IWQ4_9EUKA)

HSP 1 Score: 149 bits (377), Expect = 2.670e-40
Identity = 72/112 (64.29%), Postives = 87/112 (77.68%), Query Frame = 1 
Query:    1 LEPGSPFLWDLCHKDSLIGIEQQYFRPEEVMCTIIQGTQHYEKNLQSKVTRGDMRGTDGTVTVSGASLRIVKLGMNIIE-ETKEPVIVQKSTADVALRLHPAHSHRSLIDSL 333
            LEP SPF+WDL H+D+L   E+Q+F P ++M TIIQGTQHYEKNLQSKVTRGDM+GTDGTVT+SGAS+R +K  MN+      E  IVQ ST  VA RLHP+H+HRS+  SL
Sbjct:  349 LEPSSPFIWDLAHEDALCPTEKQHFLPNKIMTTIIQGTQHYEKNLQSKVTRGDMKGTDGTVTISGASMRCIKYSMNLSGGAANETAIVQHSTGQVAARLHPSHTHRSITTSL 460
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig94080.21713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S4IK28_9EUKA1.180e-4266.96Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A7S4IWQ4_9EUKA2.670e-4064.29Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig94080contigM-pyrifera_M_contig94080:9..341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816854.0889363-CDS-M-pyrifera_M_contig94080:8..3411622816854.0889363-CDS-M-pyrifera_M_contig94080:8..341Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94080 9..341 +
1692278217.574704-CDS-M-pyrifera_M_contig94080:8..3411692278217.574704-CDS-M-pyrifera_M_contig94080:8..341Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94080 9..341 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig94080.21713.1prot_M-pyrifera_M_contig94080.21713.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig94080 9..341 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig94080.21713.1

>prot_M-pyrifera_M_contig94080.21713.1 ID=prot_M-pyrifera_M_contig94080.21713.1|Name=mRNA_M-pyrifera_M_contig94080.21713.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
LEPGSPFLWDLCHKDSLIGIEQQYFRPEEVMCTIIQGTQHYEKNLQSKVT
RGDMRGTDGTVTVSGASLRIVKLGMNIIEETKEPVIVQKSTADVALRLHP
AHSHRSLIDSL
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mRNA from alignment at M-pyrifera_M_contig94080:9..341+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig94080.21713.1 ID=mRNA_M-pyrifera_M_contig94080.21713.1|Name=mRNA_M-pyrifera_M_contig94080.21713.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=333bp|location=Sequence derived from alignment at M-pyrifera_M_contig94080:9..341+ (Macrocystis pyrifera P11B4 male)
CTCGAACCAGGATCCCCCTTCCTGTGGGACCTATGTCACAAGGACTCGCT
GATTGGCATTGAGCAGCAGTACTTCCGCCCAGAAGAGGTCATGTGCACCA
TTATCCAAGGCACACAGCACTACGAGAAGAACCTCCAGTCCAAGGTCACG
CGTGGAGATATGCGTGGCACTGACGGAACTGTCACTGTCTCTGGTGCATC
TCTGAGAATCGTGAAGCTCGGCATGAACATCATCGAAGAGACAAAGGAGC
CAGTCATCGTGCAGAAGTCTACCGCCGACGTGGCACTGCGCCTCCACCCC
GCCCACTCCCACAGGTCACTCATTGATAGCCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig94080:9..341+

>mRNA_M-pyrifera_M_contig94080.21713.1 ID=mRNA_M-pyrifera_M_contig94080.21713.1|Name=mRNA_M-pyrifera_M_contig94080.21713.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig94080:9..341+ (Macrocystis pyrifera P11B4 male)
CTCGAACCAGGATCCCCCTTCCTGTGGGACCTATGTCACAAGGACTCGCT
GATTGGCATTGAGCAGCAGTACTTCCGCCCAGAAGAGGTCATGTGCACCA
TTATCCAAGGCACACAGCACTACGAGAAGAACCTCCAGTCCAAGGTCACG
CGTGGAGATATGCGTGGCACTGACGGAACTGTCACTGTCTCTGGTGCATC
TCTGAGAATCGTGAAGCTCGGCATGAACATCATCGAAGAGACAAAGGAGC
CAGTCATCGTGCAGAAGTCTACCGCCGACGTGGCACTGCGCCTCCACCCC
GCCCACTCCCACAGGTCACTCATTGATAGCCTCCTCGAACCAGGATCCCC
CTTCCTGTGGGACCTATGTCACAAGGACTCGCTGATTGGCATTGAGCAGC
AGTACTTCCGCCCAGAAGAGGTCATGTGCACCATTATCCAAGGCACACAG
CACTACGAGAAGAACCTCCAGTCCAAGGTCACGCGTGGAGATATGCGTGG
CACTGACGGAACTGTCACTGTCTCTGGTGCATCTCTGAGAATCGTGAAGC
TCGGCATGAACATCATCGAAGAGACAAAGGAGCCAGTCATCGTGCAGAAG
TCTACCGCCGACGTGGCACTGCGCCTCCACCCCGCCCACTCCCACAGGTC
ACTCATTGATAGCCTC
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