mRNA_M-pyrifera_M_contig94078.21711.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig94078.21711.1
Unique NamemRNA_M-pyrifera_M_contig94078.21711.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig94078.21711.1 vs. uniprot
Match: A0A7S2BTX6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BTX6_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 5.860e-11
Identity = 31/80 (38.75%), Postives = 46/80 (57.50%), Query Frame = 1
Query:   46 LSDFYRATNGSNWFVNTGWLEGEPCGDNDRARGSSSWFGVQCEGGSVFTINLQMNGLSGYLPDSIAQLPRLTSFGIFQND 285
            L+ FY AT G +W  NT W+ G PC        ++SW+G+ C  GS+ +I L+   L+GY+P  I  L  LTS  + +N+
Sbjct:    5 LAYFYTATGGPSWQTNTQWMSGSPC--------TTSWYGLDCVSGSIRSIELRAENLTGYVPTEIGILTALTSMMLDENN 76          
BLAST of mRNA_M-pyrifera_M_contig94078.21711.1 vs. uniprot
Match: X0TWF7_9ZZZZ (Fibronectin type-III domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0TWF7_9ZZZZ)

HSP 1 Score: 65.5 bits (158), Expect = 1.480e-9
Identity = 34/78 (43.59%), Postives = 41/78 (52.56%), Query Frame = 1
Query:   28 SEEYNILSDFYRATNGSNWFVNTGWLEGE-PCGDNDRARGSSSWFGVQCEGGSVFTINLQMNGLSGYLPDSIAQLPRL 258
            +EE   L D Y +T+G NW  N+ WLE   PC           WFGV CE G V+ INLQ N LSG +P  +  L  L
Sbjct:   18 TEECEALVDLYNSTDGPNWTDNSNWLEALFPC----------EWFGVSCEAGHVYQINLQTNNLSGSIPTELGNLSSL 85          
BLAST of mRNA_M-pyrifera_M_contig94078.21711.1 vs. uniprot
Match: A0A2E1A763_9CHLR (Uncharacterized protein n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A2E1A763_9CHLR)

HSP 1 Score: 65.5 bits (158), Expect = 3.250e-9
Identity = 33/76 (43.42%), Postives = 44/76 (57.89%), Query Frame = 1
Query:   34 EYNILSDFYRATNGSNWFVNTGWLE-GEPCGDNDRARGSSSWFGVQCEGGSVFTINLQMNGLSGYLPDSIAQLPRL 258
            E   L D Y +T+G+NW    GWL    PCG   +      W+G++CEGGSV +I+L  N LSG++P SI  L  L
Sbjct: 1386 ECEALVDLYNSTDGANWAHQDGWLRTSTPCGSYGK------WYGIRCEGGSVISISLGGNLLSGHIPSSIGNLTNL 1455          
BLAST of mRNA_M-pyrifera_M_contig94078.21711.1 vs. uniprot
Match: UPI00068E708E (T9SS type A sorting domain-containing protein n=1 Tax=Psychroserpens jangbogonensis TaxID=1484460 RepID=UPI00068E708E)

HSP 1 Score: 62.8 bits (151), Expect = 2.540e-8
Identity = 36/88 (40.91%), Postives = 46/88 (52.27%), Query Frame = 1
Query:   22 GYSEEYNILSDFYRATNGSNWFVNTGWLEGEPCGDNDRARGSSSWFGVQCEGGSVFTINLQMNGLSGYLPDSIAQLPRLTSFGIFQND 285
            G   E   L DFY AT+G NW +NT W    P          S W G+  E G V ++ L   G+SG +P+SI  LP L SF +FQN+
Sbjct:  288 GTPGERQALIDFYNATDGPNWAINTNWDTSAPL---------SEWAGITIENGHVASMGLGNVGVSGNIPNSIFDLPFLESF-VFQNN 365          
BLAST of mRNA_M-pyrifera_M_contig94078.21711.1 vs. uniprot
Match: UPI00058CCAE5 (T9SS type A sorting domain-containing protein n=1 Tax=Psychroserpens mesophilus TaxID=325473 RepID=UPI00058CCAE5)

HSP 1 Score: 59.7 bits (143), Expect = 2.930e-7
Identity = 35/88 (39.77%), Postives = 43/88 (48.86%), Query Frame = 1
Query:   22 GYSEEYNILSDFYRATNGSNWFVNTGWLEGEPCGDNDRARGSSSWFGVQCEGGSVFTINLQMNGLSGYLPDSIAQLPRLTSFGIFQND 285
            G   E   L DFY AT+G NW +NT W    P          S W G+  E G V  + L   G +G LP+SI  LP L SF +F N+
Sbjct:  288 GPPSERQALIDFYNATDGPNWGINTNWNTAAPL---------SEWAGITLENGHVTAMGLINVGATGNLPNSILNLPFLESF-VFSNN 365          
BLAST of mRNA_M-pyrifera_M_contig94078.21711.1 vs. uniprot
Match: A0A8B5WB75_9GAMM (Uncharacterized protein n=1 Tax=Wenzhouxiangella sp. TaxID=1979961 RepID=A0A8B5WB75_9GAMM)

HSP 1 Score: 57.8 bits (138), Expect = 1.260e-6
Identity = 32/82 (39.02%), Postives = 43/82 (52.44%), Query Frame = 1
Query:   28 SEEYNILSDFYRATNGSNWFVNTGWLEGEPCGDNDRARGSSSWFGVQCEGGS-----VFTINLQMNGLSGYLPDSIAQLPRL 258
            +++  +L++FY+AT G NWF  +GWLE E   D         W GV C         V  + L+ NGLSG LP S+A L  L
Sbjct:   22 ADDRAVLTEFYQATGGDNWFERSGWLEAESICD---------WHGVGCRTDETGIERVTRLELEWNGLSGSLPASLASLNEL 94          
BLAST of mRNA_M-pyrifera_M_contig94078.21711.1 vs. uniprot
Match: A0A0S4KEC2_BODSA (GP46-like surface antigen, putative n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4KEC2_BODSA)

HSP 1 Score: 56.6 bits (135), Expect = 3.340e-6
Identity = 31/86 (36.05%), Postives = 40/86 (46.51%), Query Frame = 1
Query:   22 GYSEEYNILSDFYRATNGSNWFVNTGWLEGEPCGDNDRARGSSSWFGVQC-------EGGSVFTINLQMNGLSGYLPDSIAQLPRL 258
            G    Y++L +FY AT+GS WF N GW    PC        S++WFGV C           V +I    N   G LP+S+  L  L
Sbjct:   44 GCEYRYDVLMEFYNATDGSQWFRNDGWGSLNPC--------STAWFGVTCGTCDTCGTQNDVLSITFNSNSPFGTLPESLGNLSNL 121          
BLAST of mRNA_M-pyrifera_M_contig94078.21711.1 vs. uniprot
Match: UPI001EEF7CEE (hypothetical protein n=1 Tax=Nocardioides sp. DJM-14 TaxID=2803368 RepID=UPI001EEF7CEE)

HSP 1 Score: 55.1 bits (131), Expect = 1.110e-5
Identity = 32/88 (36.36%), Postives = 43/88 (48.86%), Query Frame = 1
Query:   34 EYNILSDFYRATNGSNWFVNTGWLEGEPCGDNDRARGSSSWFGVQCEGG----SVFTINLQMNGLSGYLPDSIAQLPRLTSFGIFQND 285
            E   L   Y ATNG +W VN GWLEG             +W+GV C+G     SV+ ++L  NGL+G LP  +  L  L    +  N+
Sbjct:  563 ECEALVALYDATNGPDWRVNDGWLEGAAV---------CAWYGVWCQGDPESRSVWALSLDWNGLAGDLPAQLGDLSELEILSMGGNE 641          
BLAST of mRNA_M-pyrifera_M_contig94078.21711.1 vs. uniprot
Match: A0A0S4JHE0_BODSA (GP46-like surface antigen, putative (Fragment) n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4JHE0_BODSA)

HSP 1 Score: 54.7 bits (130), Expect = 1.520e-5
Identity = 30/79 (37.97%), Postives = 40/79 (50.63%), Query Frame = 1
Query:   28 SEEYNILSDFYRATNGSNWFVNTGWLEGEPCGDNDRARGSSSWFGVQCEGGSVFTINLQMNGLSGYLPDSIAQLPRLTS 264
            +  + IL + Y + NGS W  N+GW  G P  +      S  W+GV C G  V ++NL  N L G LP S   L  L+S
Sbjct:   34 AHRFPILMELYHSANGSLWSANSGW--GSPATEC-----SQDWYGVDCTGNDVRSVNLAGNNLIGSLPPSWGNLTGLSS 105          
BLAST of mRNA_M-pyrifera_M_contig94078.21711.1 vs. uniprot
Match: A0A1V5PX21_9CHLR (Internalin-A n=1 Tax=Chloroflexi bacterium ADurb.Bin360 TaxID=1852861 RepID=A0A1V5PX21_9CHLR)

HSP 1 Score: 53.5 bits (127), Expect = 4.100e-5
Identity = 30/81 (37.04%), Postives = 38/81 (46.91%), Query Frame = 1
Query:   34 EYNILSDFYRATNGSNWFVNTGWL-EGEPCGDNDRARGSSSWFGVQCEGGSVFTINLQMNGLSGYLPDSIAQLPRLTSFGI 273
            E   L   Y  T G+NW  NT WL    PC          +W+GV C  GSV ++ L  N LSG +P  I  LP+L    +
Sbjct:   52 ECEALVALYNNTGGANWTNNTDWLVTNTPC----------TWYGVTCAAGSVSSLLLDSNQLSGVIPLEIGNLPQLQQLSL 122          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig94078.21711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A7S2BTX6_9STRA5.860e-1138.75Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
X0TWF7_9ZZZZ1.480e-943.59Fibronectin type-III domain-containing protein (Fr... [more]
A0A2E1A763_9CHLR3.250e-943.42Uncharacterized protein n=1 Tax=Anaerolineaceae ba... [more]
UPI00068E708E2.540e-840.91T9SS type A sorting domain-containing protein n=1 ... [more]
UPI00058CCAE52.930e-739.77T9SS type A sorting domain-containing protein n=1 ... [more]
A0A8B5WB75_9GAMM1.260e-639.02Uncharacterized protein n=1 Tax=Wenzhouxiangella s... [more]
A0A0S4KEC2_BODSA3.340e-636.05GP46-like surface antigen, putative n=1 Tax=Bodo s... [more]
UPI001EEF7CEE1.110e-536.36hypothetical protein n=1 Tax=Nocardioides sp. DJM-... [more]
A0A0S4JHE0_BODSA1.520e-537.97GP46-like surface antigen, putative (Fragment) n=1... [more]
A0A1V5PX21_9CHLR4.100e-537.04Internalin-A n=1 Tax=Chloroflexi bacterium ADurb.B... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig94078contigM-pyrifera_M_contig94078:73..700 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size520
Cds size288
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig94078.21711.1prot_M-pyrifera_M_contig94078.21711.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig94078 329..672 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816853.9606774-UTR-M-pyrifera_M_contig94078:72..2661622816853.9606774-UTR-M-pyrifera_M_contig94078:72..266Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig94078 73..266 +
1692278217.4836078-UTR-M-pyrifera_M_contig94078:72..2661692278217.4836078-UTR-M-pyrifera_M_contig94078:72..266Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig94078 73..266 +
1622816853.9720757-UTR-M-pyrifera_M_contig94078:318..3281622816853.9720757-UTR-M-pyrifera_M_contig94078:318..328Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig94078 319..328 +
1692278217.4970765-UTR-M-pyrifera_M_contig94078:318..3281692278217.4970765-UTR-M-pyrifera_M_contig94078:318..328Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig94078 319..328 +
1622816854.0068772-UTR-M-pyrifera_M_contig94078:672..7001622816854.0068772-UTR-M-pyrifera_M_contig94078:672..700Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig94078 673..700 +
1692278217.5436008-UTR-M-pyrifera_M_contig94078:672..7001692278217.5436008-UTR-M-pyrifera_M_contig94078:672..700Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig94078 673..700 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816853.9833236-CDS-M-pyrifera_M_contig94078:328..3901622816853.9833236-CDS-M-pyrifera_M_contig94078:328..390Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94078 329..390 +
1692278217.5078506-CDS-M-pyrifera_M_contig94078:328..3901692278217.5078506-CDS-M-pyrifera_M_contig94078:328..390Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94078 329..390 +
1622816853.9961534-CDS-M-pyrifera_M_contig94078:446..6721622816853.9961534-CDS-M-pyrifera_M_contig94078:446..672Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94078 447..672 +
1692278217.526075-CDS-M-pyrifera_M_contig94078:446..6721692278217.526075-CDS-M-pyrifera_M_contig94078:446..672Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94078 447..672 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig94078.21711.1

>prot_M-pyrifera_M_contig94078.21711.1 ID=prot_M-pyrifera_M_contig94078.21711.1|Name=mRNA_M-pyrifera_M_contig94078.21711.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=96bp
MNGLSGYLPDSIAQLPRLTSFGIFQNDVGGTVPAVLGRMPSLSTLFLSGN
RFTGTIPSTFDGTGCEDLEVLYASYLCTWPYREGGPNTGTQVSVQ*
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mRNA from alignment at M-pyrifera_M_contig94078:73..700+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig94078.21711.1 ID=mRNA_M-pyrifera_M_contig94078.21711.1|Name=mRNA_M-pyrifera_M_contig94078.21711.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=628bp|location=Sequence derived from alignment at M-pyrifera_M_contig94078:73..700+ (Macrocystis pyrifera P11B4 male)
CCCCTGACCTCTTTTTCGCCAGGTTACTCTGAAGAGTACAACATACTCTC TGACTTCTACCGAGCGACAAATGGTAGCAACTGGTTTGTGAACACTGGCT GGTTAGAGGGTGAGCCGTGCGGAGACAACGACAGGGCGCGTGGCTCGTCT TCCTGGTTCGGTGTACAATGTGAAGGGGGCTCCGTATTTACCATGTACGT ATAGCTCTGCAGCTTGATGGTACGCACGGACTGTTAACGTTTCCAGAAAT CTGCAGATGAACGGATTGAGCGGCTACCTCCCCGACTCCATCGCACAGCT CCCGCGACTTACATCGTTGTGAGCATCCCCTGCCTCCGCTCTCATGCTTC TTACAAGCTTCTAACTTCGCCCAGTGGCATTTTCCAAAACGATGTGGGCG GTACGGTGCCAGCTGTACTGGGCCGAATGCCCTCACTCAGCACGCTCTTT TTGAGCGGAAACAGGTTTACTGGAACCATTCCGAGCACTTTTGATGGTAC AGGTTGTGAAGATCTAGAAGTATTGTACGCCTCCTACTTGTGCACCTGGC CGTATCGAGAAGGCGGCCCTAACACAGGTACCCAGGTCTCTGTTCAGTAA CCAATTGACGGGAACTATTCCGGAGATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig94078:73..700+

>mRNA_M-pyrifera_M_contig94078.21711.1 ID=mRNA_M-pyrifera_M_contig94078.21711.1|Name=mRNA_M-pyrifera_M_contig94078.21711.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=576bp|location=Sequence derived from alignment at M-pyrifera_M_contig94078:73..700+ (Macrocystis pyrifera P11B4 male)
ATGAACGGATTGAGCGGCTACCTCCCCGACTCCATCGCACAGCTCCCGCG
ACTTACATCGTTATGAACGGATTGAGCGGCTACCTCCCCGACTCCATCGC
ACAGCTCCCGCGACTTACATCGTTTGGCATTTTCCAAAACGATGTGGGCG
GTACGGTGCCAGCTGTACTGGGCCGAATGCCCTCACTCAGCACGCTCTTT
TTGAGCGGAAACAGGTTTACTGGAACCATTCCGAGCACTTTTGATGGTAC
AGGTTGTGAAGATCTAGAAGTATTGTACGCCTCCTACTTGTGCACCTGGC
CGTATCGAGAAGGCGGCCCTAACACAGGTACCCAGGTCTCTGTTCAGTAA
TGGCATTTTCCAAAACGATGTGGGCGGTACGGTGCCAGCTGTACTGGGCC
GAATGCCCTCACTCAGCACGCTCTTTTTGAGCGGAAACAGGTTTACTGGA
ACCATTCCGAGCACTTTTGATGGTACAGGTTGTGAAGATCTAGAAGTATT
GTACGCCTCCTACTTGTGCACCTGGCCGTATCGAGAAGGCGGCCCTAACA
CAGGTACCCAGGTCTCTGTTCAGTAA
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