mRNA_M-pyrifera_M_contig94073.21708.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig94073.21708.1
Unique NamemRNA_M-pyrifera_M_contig94073.21708.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig94073.21708.1 vs. uniprot
Match: A0A3C1KR26_9GAMM (Type IV pili twitching motility protein PilT n=8 Tax=Halieaceae TaxID=1706372 RepID=A0A3C1KR26_9GAMM)

HSP 1 Score: 486 bits (1251), Expect = 1.870e-171
Identity = 246/248 (99.19%), Postives = 246/248 (99.19%), Query Frame = 1
Query:    1 PPIIKELAMTKRGLVIFVGATGTGKSTSLAAMVGYRNQNSRGHIISIEDPIEFMHDHGNCLVTQREVGIDTESFDVALKNTLRQAPDVIMIGEVRSADTMAQALTFAETGHLCLCTLHANNANQALDRIQSFFPADLHSQVWMDLSLNLKAMVAQQLLPHKEGKGRTPVVEVLLNSPLIQDYIRKGDVHLIKDVMAKSTEQGMQTMDQSLIAAYKANRITREDAVRYADSANDVRLMIKMFDKGQYSG 744
            PPIIKELAMTKRGLVIFVGATGTGKSTSLAAMVGYRNQNSRGHIISIEDPIEFMHDHGNCLVTQREVGIDTESFDVALKNTLRQAPDVIMIGEVRSADTMAQALTFAETGHLCLCTLHANNANQALDRIQSFFPADLHSQVWMDLSLNLKAMVAQQLLPHKEGKGRTPVVEVLLNSPLIQDYIRKGDVHLIKDVMAKSTEQGMQTMDQSLIAAYK NRITREDAVRYADSANDVRLMIKMFDKGQ SG
Sbjct:  112 PPIIKELAMTKRGLVIFVGATGTGKSTSLAAMVGYRNQNSRGHIISIEDPIEFMHDHGNCLVTQREVGIDTESFDVALKNTLRQAPDVIMIGEVRSADTMAQALTFAETGHLCLCTLHANNANQALDRIQSFFPADLHSQVWMDLSLNLKAMVAQQLLPHKEGKGRTPVVEVLLNSPLIQDYIRKGDVHLIKDVMAKSTEQGMQTMDQSLIAAYKDNRITREDAVRYADSANDVRLMIKMFDKGQDSG 359          
BLAST of mRNA_M-pyrifera_M_contig94073.21708.1 vs. uniprot
Match: A0A5C8ZQF5_9GAMM (PilT/PilU family type 4a pilus ATPase n=1 Tax=Parahaliea maris TaxID=2716870 RepID=A0A5C8ZQF5_9GAMM)

HSP 1 Score: 431 bits (1108), Expect = 1.320e-149
Identity = 213/245 (86.94%), Postives = 231/245 (94.29%), Query Frame = 1
Query:    1 PPIIKELAMTKRGLVIFVGATGTGKSTSLAAMVGYRNQNSRGHIISIEDPIEFMHDHGNCLVTQREVGIDTESFDVALKNTLRQAPDVIMIGEVRSADTMAQALTFAETGHLCLCTLHANNANQALDRIQSFFPADLHSQVWMDLSLNLKAMVAQQLLPHKEGKGRTPVVEVLLNSPLIQDYIRKGDVHLIKDVMAKSTEQGMQTMDQSLIAAYKANRITREDAVRYADSANDVRLMIKMFDKGQ 735
            PPII+ELAMTKRGLVIFVGATGTGKSTSLAAMVGYRNQNSRGHIISIEDPIEF+H+H  C+VTQREVG+DTESFDVALKNTLRQAPDVI+IGEVRSA+TM QAL FAETGHLCLCTLHANNANQALDRIQSFFPA+LHSQVWMDLSLNLK+MVAQQL+P K GKGRTPVVEVLLNSPLIQDYIRKG VHLIK+VMAKSTE GMQT+DQ+L  AYK  RI+++DAVRYADS NDVRLMIKM +KG+
Sbjct:  112 PPIIRELAMTKRGLVIFVGATGTGKSTSLAAMVGYRNQNSRGHIISIEDPIEFIHEHAGCIVTQREVGMDTESFDVALKNTLRQAPDVILIGEVRSAETMQQALAFAETGHLCLCTLHANNANQALDRIQSFFPAELHSQVWMDLSLNLKSMVAQQLIPSKSGKGRTPVVEVLLNSPLIQDYIRKGQVHLIKEVMAKSTELGMQTLDQALFNAYKEGRISQDDAVRYADSGNDVRLMIKMHEKGK 356          
BLAST of mRNA_M-pyrifera_M_contig94073.21708.1 vs. uniprot
Match: A0A6C0U223_9GAMM (PilT/PilU family type 4a pilus ATPase n=1 Tax=Kineobactrum salinum TaxID=2708301 RepID=A0A6C0U223_9GAMM)

HSP 1 Score: 430 bits (1106), Expect = 2.230e-149
Identity = 209/245 (85.31%), Postives = 235/245 (95.92%), Query Frame = 1
Query:    1 PPIIKELAMTKRGLVIFVGATGTGKSTSLAAMVGYRNQNSRGHIISIEDPIEFMHDHGNCLVTQREVGIDTESFDVALKNTLRQAPDVIMIGEVRSADTMAQALTFAETGHLCLCTLHANNANQALDRIQSFFPADLHSQVWMDLSLNLKAMVAQQLLPHKEGKGRTPVVEVLLNSPLIQDYIRKGDVHLIKDVMAKSTEQGMQTMDQSLIAAYKANRITREDAVRYADSANDVRLMIKMFDKGQ 735
            PPI+K+LAMTKRGLVIFVGATGTGKSTSLAAMVG+RN NSRGHIISIEDPIEF+HDH NC+VTQREVGIDTESFDVALKN LRQAPDVI+IGEVR+A+TMAQALTFAETGHLCLCTLHANNANQALDRIQSFFPA LH+QVWMDLSLNLKAMVAQQLLP K+GKGRTPVVEVLLN+PL+Q+YIRKG+VHLIKD+MAKSTE GMQT+DQSL  AYK N I+++DA+R+ADSAN+VRLMIKM+++G+
Sbjct:  112 PPIVKDLAMTKRGLVIFVGATGTGKSTSLAAMVGHRNHNSRGHIISIEDPIEFIHDHANCIVTQREVGIDTESFDVALKNMLRQAPDVILIGEVRTAETMAQALTFAETGHLCLCTLHANNANQALDRIQSFFPAQLHTQVWMDLSLNLKAMVAQQLLPRKDGKGRTPVVEVLLNTPLVQEYIRKGEVHLIKDLMAKSTELGMQTLDQSLFKAYKENLISQDDAMRFADSANEVRLMIKMYERGR 356          
BLAST of mRNA_M-pyrifera_M_contig94073.21708.1 vs. uniprot
Match: A0A2D5FHD1_9GAMM (Type IV pili twitching motility protein PilT n=2 Tax=Haliea sp. TaxID=1932666 RepID=A0A2D5FHD1_9GAMM)

HSP 1 Score: 428 bits (1100), Expect = 1.760e-148
Identity = 210/245 (85.71%), Postives = 234/245 (95.51%), Query Frame = 1
Query:    1 PPIIKELAMTKRGLVIFVGATGTGKSTSLAAMVGYRNQNSRGHIISIEDPIEFMHDHGNCLVTQREVGIDTESFDVALKNTLRQAPDVIMIGEVRSADTMAQALTFAETGHLCLCTLHANNANQALDRIQSFFPADLHSQVWMDLSLNLKAMVAQQLLPHKEGKGRTPVVEVLLNSPLIQDYIRKGDVHLIKDVMAKSTEQGMQTMDQSLIAAYKANRITREDAVRYADSANDVRLMIKMFDKGQ 735
            P IIK+L+MTKRGLVIFVGATGTGKSTSLAAMVGYRNQNSRGHIISIEDPIEF+H+HG CLVTQREVG+DTESFDVALKNTLRQAPDVI+IGEVRSA+TM+QALTFAETGHLCLCTLHANNANQALDRI SFFP+DLH QVWMDLSLNLKAMVAQQLLP K+GKGRTPVVE+LLN+PL+QDYIRKG+VHLIK++MAKSTE GMQT+DQSLI +YK N I+ E+A+RYADSAN+VRL IKMF+KG+
Sbjct:  112 PRIIKDLSMTKRGLVIFVGATGTGKSTSLAAMVGYRNQNSRGHIISIEDPIEFIHEHGKCLVTQREVGVDTESFDVALKNTLRQAPDVILIGEVRSAETMSQALTFAETGHLCLCTLHANNANQALDRILSFFPSDLHHQVWMDLSLNLKAMVAQQLLPRKDGKGRTPVVEILLNTPLVQDYIRKGEVHLIKELMAKSTELGMQTLDQSLIQSYKDNLISVEEALRYADSANEVRLAIKMFEKGR 356          
BLAST of mRNA_M-pyrifera_M_contig94073.21708.1 vs. uniprot
Match: A0A2N5X901_9GAMM (Type IV pili twitching motility protein PilT n=2 Tax=Pseudohalioglobus TaxID=2875235 RepID=A0A2N5X901_9GAMM)

HSP 1 Score: 428 bits (1100), Expect = 1.950e-148
Identity = 209/248 (84.27%), Postives = 232/248 (93.55%), Query Frame = 1
Query:    1 PPIIKELAMTKRGLVIFVGATGTGKSTSLAAMVGYRNQNSRGHIISIEDPIEFMHDHGNCLVTQREVGIDTESFDVALKNTLRQAPDVIMIGEVRSADTMAQALTFAETGHLCLCTLHANNANQALDRIQSFFPADLHSQVWMDLSLNLKAMVAQQLLPHKEGKGRTPVVEVLLNSPLIQDYIRKGDVHLIKDVMAKSTEQGMQTMDQSLIAAYKANRITREDAVRYADSANDVRLMIKMFDKGQYSG 744
            PPIIKELAMTKRGLVIFVGATGTGKSTSLA+MVGYRN NSRGHII+IEDPIE+MH+HG+C+VTQREVG+DTESFDVALKNTLRQAPDVI+IGEVR+A+TM QALTFAETGHLCLCTLHANNANQALDRIQSFFP + HSQVWMDLSLNLK+MVAQQLLP K+G+GRTPVVEVLLN+PL+ DYIRKG+VHLIKD+MAKSTE GMQT+DQSL  AYK   IT+EDAV YADSANDVRL IKM ++GQ+ G
Sbjct:  112 PPIIKELAMTKRGLVIFVGATGTGKSTSLASMVGYRNHNSRGHIITIEDPIEYMHNHGSCIVTQREVGVDTESFDVALKNTLRQAPDVILIGEVRTAETMMQALTFAETGHLCLCTLHANNANQALDRIQSFFPPEHHSQVWMDLSLNLKSMVAQQLLPRKDGEGRTPVVEVLLNTPLVADYIRKGEVHLIKDLMAKSTELGMQTLDQSLTKAYKEGLITKEDAVNYADSANDVRLAIKMHERGQFGG 359          
BLAST of mRNA_M-pyrifera_M_contig94073.21708.1 vs. uniprot
Match: A0A5C8ZWW5_9GAMM (PilT/PilU family type 4a pilus ATPase n=2 Tax=Parahaliea TaxID=1857932 RepID=A0A5C8ZWW5_9GAMM)

HSP 1 Score: 424 bits (1089), Expect = 8.290e-147
Identity = 209/245 (85.31%), Postives = 229/245 (93.47%), Query Frame = 1
Query:    1 PPIIKELAMTKRGLVIFVGATGTGKSTSLAAMVGYRNQNSRGHIISIEDPIEFMHDHGNCLVTQREVGIDTESFDVALKNTLRQAPDVIMIGEVRSADTMAQALTFAETGHLCLCTLHANNANQALDRIQSFFPADLHSQVWMDLSLNLKAMVAQQLLPHKEGKGRTPVVEVLLNSPLIQDYIRKGDVHLIKDVMAKSTEQGMQTMDQSLIAAYKANRITREDAVRYADSANDVRLMIKMFDKGQ 735
            PPII+ELAMTKRGLVIFVGATGTGKSTSLAAMVGYRN+NSRGHIISIEDPIEF+H+H  C++TQREVG+DTESFDVAL+N+LRQAPDVIMIGEVRSA+TM QAL FAETGHLCLCTLHANNANQALDRIQSFFPA+L SQVWMDLSLNLKAMVAQQLLP + GKGRTPV+EVLLN+PL+QDYIRKG VHLIK+VMAKS E GMQT+DQSL  AYKA RITR+DA RYADS NDVRLMIKM +KG+
Sbjct:  112 PPIIRELAMTKRGLVIFVGATGTGKSTSLAAMVGYRNRNSRGHIISIEDPIEFIHEHAGCIITQREVGMDTESFDVALRNSLRQAPDVIMIGEVRSANTMQQALAFAETGHLCLCTLHANNANQALDRIQSFFPAELISQVWMDLSLNLKAMVAQQLLPSRSGKGRTPVIEVLLNTPLVQDYIRKGQVHLIKEVMAKSNEIGMQTLDQSLFEAYKAGRITRDDAERYADSGNDVRLMIKMHEKGK 356          
BLAST of mRNA_M-pyrifera_M_contig94073.21708.1 vs. uniprot
Match: A0A2N5Y544_9GAMM (Type IV pili twitching motility protein PilT n=1 Tax=Kineobactrum sediminis TaxID=1905677 RepID=A0A2N5Y544_9GAMM)

HSP 1 Score: 424 bits (1089), Expect = 8.880e-147
Identity = 206/245 (84.08%), Postives = 235/245 (95.92%), Query Frame = 1
Query:    1 PPIIKELAMTKRGLVIFVGATGTGKSTSLAAMVGYRNQNSRGHIISIEDPIEFMHDHGNCLVTQREVGIDTESFDVALKNTLRQAPDVIMIGEVRSADTMAQALTFAETGHLCLCTLHANNANQALDRIQSFFPADLHSQVWMDLSLNLKAMVAQQLLPHKEGKGRTPVVEVLLNSPLIQDYIRKGDVHLIKDVMAKSTEQGMQTMDQSLIAAYKANRITREDAVRYADSANDVRLMIKMFDKGQ 735
            P I++EL+MTKRGLVIFVGATGTGKSTSLAAMVG+RN+NSRGHIISIEDPIEF+H+H NC+VTQREVGIDT+SFDVALKNTLRQAPDVI+IGEVRSA+TMAQALTFAETGHLCLCTLHANNANQALDRIQSFFPA++ SQ+WMDLSLNLK M+AQQLLP K+GKGRTPVVEVLLNSPLIQ+YIRKG+VHLIK+VMAKSTE GMQT+DQSL+ AYK + I+ ++A+R+ADSANDVRLMIKMF+KG+
Sbjct:  113 PKIVEELSMTKRGLVIFVGATGTGKSTSLAAMVGHRNRNSRGHIISIEDPIEFIHEHANCIVTQREVGIDTDSFDVALKNTLRQAPDVILIGEVRSAETMAQALTFAETGHLCLCTLHANNANQALDRIQSFFPANMQSQIWMDLSLNLKGMIAQQLLPRKDGKGRTPVVEVLLNSPLIQEYIRKGEVHLIKEVMAKSTELGMQTLDQSLVQAYKDDLISLDEAIRHADSANDVRLMIKMFEKGR 357          
BLAST of mRNA_M-pyrifera_M_contig94073.21708.1 vs. uniprot
Match: A0A7V1EQ61_9GAMM (PilT/PilU family type 4a pilus ATPase n=1 Tax=Halieaceae bacterium TaxID=2026743 RepID=A0A7V1EQ61_9GAMM)

HSP 1 Score: 419 bits (1078), Expect = 1.390e-146
Identity = 204/246 (82.93%), Postives = 231/246 (93.90%), Query Frame = 1
Query:    1 PPIIKELAMTKRGLVIFVGATGTGKSTSLAAMVGYRNQNSRGHIISIEDPIEFMHDHGNCLVTQREVGIDTESFDVALKNTLRQAPDVIMIGEVRSADTMAQALTFAETGHLCLCTLHANNANQALDRIQSFFPADLHSQVWMDLSLNLKAMVAQQLLPHKEGKGRTPVVEVLLNSPLIQDYIRKGDVHLIKDVMAKSTEQGMQTMDQSLIAAYKANRITREDAVRYADSANDVRLMIKMFDKGQY 738
            PPIIKELAMTKRGLVIFVGATGTGKSTSLAAMVGYRN NS GHIISIEDPIEF+H+H  C+VTQREVG+DTESFDVALKNTLRQAPDVI+IGEVR+A+TM QALTFAETGHLCLCTLHANNANQALDRIQSFFPA+LH+QVWMDLSLNLK+MVAQQLLP K+GKGR PVVEVLLN+PL+ +YIRKG+VHLIK++MAKSTE GMQT+DQSL+ AYK   I++EDA+RYADS+NDVRL IKM ++G++
Sbjct:   10 PPIIKELAMTKRGLVIFVGATGTGKSTSLAAMVGYRNHNSHGHIISIEDPIEFIHEHAGCIVTQREVGMDTESFDVALKNTLRQAPDVILIGEVRTAETMQQALTFAETGHLCLCTLHANNANQALDRIQSFFPAELHNQVWMDLSLNLKSMVAQQLLPRKDGKGRAPVVEVLLNTPLVAEYIRKGEVHLIKELMAKSTELGMQTLDQSLVQAYKDGVISKEDALRYADSSNDVRLKIKMHEQGKF 255          
BLAST of mRNA_M-pyrifera_M_contig94073.21708.1 vs. uniprot
Match: A0A496XI16_9GAMM (Type IV pili twitching motility protein PilT n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A496XI16_9GAMM)

HSP 1 Score: 422 bits (1086), Expect = 2.450e-146
Identity = 206/246 (83.74%), Postives = 232/246 (94.31%), Query Frame = 1
Query:    1 PPIIKELAMTKRGLVIFVGATGTGKSTSLAAMVGYRNQNSRGHIISIEDPIEFMHDHGNCLVTQREVGIDTESFDVALKNTLRQAPDVIMIGEVRSADTMAQALTFAETGHLCLCTLHANNANQALDRIQSFFPADLHSQVWMDLSLNLKAMVAQQLLPHKEGKGRTPVVEVLLNSPLIQDYIRKGDVHLIKDVMAKSTEQGMQTMDQSLIAAYKANRITREDAVRYADSANDVRLMIKMFDKGQY 738
            PPIIKELAMTKRGLVIFVGATGTGKSTSLAAMVGYRN+NS GHIISIEDPIEF+H+H  C+VTQREVG+DTESFDVALKNTLRQAPDVI+IGEVR+++TM QALTFAETGHLCLCTLHANNANQALDRIQSFFPA+LH+QVWMDLSLNLK+MVAQQLLP K+GKGR PVVEVLLNSPLI +YIRKG+VHLIK++MAKSTE GMQT+DQSL+ AYK   I++EDA+RYADSANDVRL IKM ++G++
Sbjct:  112 PPIIKELAMTKRGLVIFVGATGTGKSTSLAAMVGYRNENSHGHIISIEDPIEFIHEHAGCIVTQREVGMDTESFDVALKNTLRQAPDVILIGEVRTSETMQQALTFAETGHLCLCTLHANNANQALDRIQSFFPAELHNQVWMDLSLNLKSMVAQQLLPRKDGKGRAPVVEVLLNSPLIAEYIRKGEVHLIKELMAKSTELGMQTLDQSLVVAYKDGVISKEDAIRYADSANDVRLKIKMEERGKF 357          
BLAST of mRNA_M-pyrifera_M_contig94073.21708.1 vs. uniprot
Match: A0A2N5YAC3_9GAMM (Type IV pili twitching motility protein PilT n=3 Tax=Halioglobus TaxID=1217416 RepID=A0A2N5YAC3_9GAMM)

HSP 1 Score: 422 bits (1084), Expect = 5.290e-146
Identity = 204/248 (82.26%), Postives = 229/248 (92.34%), Query Frame = 1
Query:    1 PPIIKELAMTKRGLVIFVGATGTGKSTSLAAMVGYRNQNSRGHIISIEDPIEFMHDHGNCLVTQREVGIDTESFDVALKNTLRQAPDVIMIGEVRSADTMAQALTFAETGHLCLCTLHANNANQALDRIQSFFPADLHSQVWMDLSLNLKAMVAQQLLPHKEGKGRTPVVEVLLNSPLIQDYIRKGDVHLIKDVMAKSTEQGMQTMDQSLIAAYKANRITREDAVRYADSANDVRLMIKMFDKGQYSG 744
            PPIIKELAMTKRGL+IFVGATGTGKSTSLA+MVGYRNQNSRGHII+IEDPIEFMH H  C+VTQREVG+DTESF VALKNTLRQAPDVI+IGEVR+A+TM QALTFAETGHLCLCTLHANNANQALDRIQSFFP + H QVWMD+SLNLK+MVAQQLLPHK G+GR PVVEV+LNSPLI DYIRKG+VHLIK++MAKSTE GMQT+DQSL+ AYK  +IT++DA+R+ADSANDVRL IKM D+G  +G
Sbjct:  112 PPIIKELAMTKRGLIIFVGATGTGKSTSLASMVGYRNQNSRGHIITIEDPIEFMHQHAGCIVTQREVGVDTESFQVALKNTLRQAPDVILIGEVRTAETMMQALTFAETGHLCLCTLHANNANQALDRIQSFFPPEQHRQVWMDMSLNLKSMVAQQLLPHKSGEGRVPVVEVMLNSPLIADYIRKGEVHLIKELMAKSTELGMQTLDQSLVKAYKEGQITKDDAIRFADSANDVRLQIKMHDRGAGTG 359          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig94073.21708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C1KR26_9GAMM1.870e-17199.19Type IV pili twitching motility protein PilT n=8 T... [more]
A0A5C8ZQF5_9GAMM1.320e-14986.94PilT/PilU family type 4a pilus ATPase n=1 Tax=Para... [more]
A0A6C0U223_9GAMM2.230e-14985.31PilT/PilU family type 4a pilus ATPase n=1 Tax=Kine... [more]
A0A2D5FHD1_9GAMM1.760e-14885.71Type IV pili twitching motility protein PilT n=2 T... [more]
A0A2N5X901_9GAMM1.950e-14884.27Type IV pili twitching motility protein PilT n=2 T... [more]
A0A5C8ZWW5_9GAMM8.290e-14785.31PilT/PilU family type 4a pilus ATPase n=2 Tax=Para... [more]
A0A2N5Y544_9GAMM8.880e-14784.08Type IV pili twitching motility protein PilT n=1 T... [more]
A0A7V1EQ61_9GAMM1.390e-14682.93PilT/PilU family type 4a pilus ATPase n=1 Tax=Hali... [more]
A0A496XI16_9GAMM2.450e-14683.74Type IV pili twitching motility protein PilT n=1 T... [more]
A0A2N5YAC3_9GAMM5.290e-14682.26Type IV pili twitching motility protein PilT n=3 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig94073contigM-pyrifera_M_contig94073:2..745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score469.9
Seed ortholog evalue7e-130
Seed eggNOG ortholog1121937.AUHJ01000010_gene1617
Preferred namepilU
KEGG koko:K02670
KEGG TC3.A.15.2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.COG5008 Tfp pilus assembly protein, ATPase PilU
EggNOG OGs1QTTX@1224,1RN0B@1236,464NP@72275,COG5008@1,COG5008@2
COG Functional cat.NU
Best tax levelAlteromonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02035,ko02044
Exons1
Model size744
Cds size720
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816853.8396218-UTR-M-pyrifera_M_contig94073:1..251622816853.8396218-UTR-M-pyrifera_M_contig94073:1..25Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig94073 2..25 +
1692278217.413269-UTR-M-pyrifera_M_contig94073:1..251692278217.413269-UTR-M-pyrifera_M_contig94073:1..25Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig94073 2..25 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816853.852423-CDS-M-pyrifera_M_contig94073:25..7451622816853.852423-CDS-M-pyrifera_M_contig94073:25..745Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94073 26..745 +
1692278217.4254382-CDS-M-pyrifera_M_contig94073:25..7451692278217.4254382-CDS-M-pyrifera_M_contig94073:25..745Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94073 26..745 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig94073.21708.1prot_M-pyrifera_M_contig94073.21708.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig94073 26..745 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig94073.21708.1

>prot_M-pyrifera_M_contig94073.21708.1 ID=prot_M-pyrifera_M_contig94073.21708.1|Name=mRNA_M-pyrifera_M_contig94073.21708.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=240bp
MTKRGLVIFVGATGTGKSTSLAAMVGYRNQNSRGHIISIEDPIEFMHDHG
NCLVTQREVGIDTESFDVALKNTLRQAPDVIMIGEVRSADTMAQALTFAE
TGHLCLCTLHANNANQALDRIQSFFPADLHSQVWMDLSLNLKAMVAQQLL
PHKEGKGRTPVVEVLLNSPLIQDYIRKGDVHLIKDVMAKSTEQGMQTMDQ
SLIAAYKANRITREDAVRYADSANDVRLMIKMFDKGQYSG
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mRNA from alignment at M-pyrifera_M_contig94073:2..745+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig94073.21708.1 ID=mRNA_M-pyrifera_M_contig94073.21708.1|Name=mRNA_M-pyrifera_M_contig94073.21708.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=744bp|location=Sequence derived from alignment at M-pyrifera_M_contig94073:2..745+ (Macrocystis pyrifera P11B4 male)
CCGCCGATCATCAAGGAACTGGCCATGACCAAGCGCGGCCTGGTGATTTT CGTCGGCGCCACCGGCACCGGCAAGTCCACCTCGCTGGCGGCGATGGTGG GTTACCGCAACCAGAACAGCCGCGGCCATATCATCAGCATTGAAGACCCG ATCGAGTTCATGCACGACCACGGCAACTGCCTGGTGACCCAGCGTGAGGT GGGCATTGACACCGAGTCCTTCGATGTCGCCCTGAAAAACACCCTGCGCC AGGCGCCGGATGTGATCATGATCGGCGAGGTGCGCTCTGCCGATACCATG GCCCAGGCGCTCACCTTTGCGGAGACCGGCCACCTCTGCCTGTGTACCCT GCACGCCAACAATGCCAACCAGGCACTCGACCGCATCCAGAGCTTCTTCC CCGCCGACCTGCACTCCCAGGTGTGGATGGACCTGTCGCTCAACCTCAAG GCCATGGTGGCTCAGCAGTTGCTCCCGCACAAAGAGGGCAAGGGGCGTAC GCCGGTGGTGGAGGTGCTGCTCAACTCGCCACTGATCCAGGATTACATTC GCAAGGGCGATGTGCACCTGATCAAGGATGTCATGGCCAAGTCCACCGAG CAGGGCATGCAAACCATGGACCAGTCGCTGATTGCGGCCTACAAGGCCAA CCGCATTACGCGCGAGGATGCGGTGCGCTACGCCGACTCGGCCAACGATG TGCGGCTGATGATCAAGATGTTCGACAAGGGGCAGTACTCGGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig94073:2..745+

>mRNA_M-pyrifera_M_contig94073.21708.1 ID=mRNA_M-pyrifera_M_contig94073.21708.1|Name=mRNA_M-pyrifera_M_contig94073.21708.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1440bp|location=Sequence derived from alignment at M-pyrifera_M_contig94073:2..745+ (Macrocystis pyrifera P11B4 male)
ATGACCAAGCGCGGCCTGGTGATTTTCGTCGGCGCCACCGGCACCGGCAA
GTCCACCTCGCTGGCGGCGATGGTGGGTTACCGCAACCAGAACAGCCGCG
GCCATATCATCAGCATTGAAGACCCGATCGAGTTCATGCACGACCACGGC
AACTGCCTGGTGACCCAGCGTGAGGTGGGCATTGACACCGAGTCCTTCGA
TGTCGCCCTGAAAAACACCCTGCGCCAGGCGCCGGATGTGATCATGATCG
GCGAGGTGCGCTCTGCCGATACCATGGCCCAGGCGCTCACCTTTGCGGAG
ACCGGCCACCTCTGCCTGTGTACCCTGCACGCCAACAATGCCAACCAGGC
ACTCGACCGCATCCAGAGCTTCTTCCCCGCCGACCTGCACTCCCAGGTGT
GGATGGACCTGTCGCTCAACCTCAAGGCCATGGTGGCTCAGCAGTTGCTC
CCGCACAAAGAGGGCAAGGGGCGTACGCCGGTGGTGGAGGTGCTGCTCAA
CTCGCCACTGATCCAGGATTACATTCGCAAGGGCGATGTGCACCTGATCA
AGGATGTCATGGCCAAGTCCACCGAGCAGGGCATGCAAACCATGGACCAG
TCGCTGATTGCGGCCTACAAGGCCAACCGCATTACGCGCGAGGATGCGGT
GCGCTACGCCGACTCGGCCAACGATGTGCGGCTGATGATCAAGATGTTCG
ACAAGGGGCAGTACTCGGGGATGACCAAGCGCGGCCTGGTGATTTTCGTC
GGCGCCACCGGCACCGGCAAGTCCACCTCGCTGGCGGCGATGGTGGGTTA
CCGCAACCAGAACAGCCGCGGCCATATCATCAGCATTGAAGACCCGATCG
AGTTCATGCACGACCACGGCAACTGCCTGGTGACCCAGCGTGAGGTGGGC
ATTGACACCGAGTCCTTCGATGTCGCCCTGAAAAACACCCTGCGCCAGGC
GCCGGATGTGATCATGATCGGCGAGGTGCGCTCTGCCGATACCATGGCCC
AGGCGCTCACCTTTGCGGAGACCGGCCACCTCTGCCTGTGTACCCTGCAC
GCCAACAATGCCAACCAGGCACTCGACCGCATCCAGAGCTTCTTCCCCGC
CGACCTGCACTCCCAGGTGTGGATGGACCTGTCGCTCAACCTCAAGGCCA
TGGTGGCTCAGCAGTTGCTCCCGCACAAAGAGGGCAAGGGGCGTACGCCG
GTGGTGGAGGTGCTGCTCAACTCGCCACTGATCCAGGATTACATTCGCAA
GGGCGATGTGCACCTGATCAAGGATGTCATGGCCAAGTCCACCGAGCAGG
GCATGCAAACCATGGACCAGTCGCTGATTGCGGCCTACAAGGCCAACCGC
ATTACGCGCGAGGATGCGGTGCGCTACGCCGACTCGGCCAACGATGTGCG
GCTGATGATCAAGATGTTCGACAAGGGGCAGTACTCGGGG
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