mRNA_M-pyrifera_M_contig93995.21694.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93995.21694.1
Unique NamemRNA_M-pyrifera_M_contig93995.21694.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig93995.21694.1 vs. uniprot
Match: A0A7R6PQ66_9GAMM (Glycosyltransferase family 4 n=1 Tax=Neptunomonas japonica JAMM 1380 TaxID=1441457 RepID=A0A7R6PQ66_9GAMM)

HSP 1 Score: 90.5 bits (223), Expect = 6.640e-19
Identity = 48/114 (42.11%), Postives = 79/114 (69.30%), Query Frame = 1
Query:   19 SAMAANEVYFNSSYNLTSFLEGLGSVFKHIPRDQLSLFGLSDARAAVKEKATVLSYPVAIPS--SSQRHTSKDGPLHILWNHRWEWDKGPTSLFAALRSLRDRDISFSVSVVGE 354
            SA+AA+ + FN+ YN  +F+EG  ++ K +P DQ+   GL+   A +++ ++VL+ P+      ++Q+HT   GPLHI+WNHRWE+DKGP  L+ AL++L + +I  S+S+VG+
Sbjct:  120 SALAADHIAFNTHYNRNTFIEGASALLKKLP-DQVPA-GLT---AHLQQNSSVLAVPLNDDCYVTTQQHT---GPLHIVWNHRWEFDKGPELLYGALKTLHNENIKVSLSIVGQ 225          
BLAST of mRNA_M-pyrifera_M_contig93995.21694.1 vs. uniprot
Match: UPI00096B5830 (glycosyltransferase-like domain-containing protein 1 n=1 Tax=Aethina tumida TaxID=116153 RepID=UPI00096B5830)

HSP 1 Score: 87.4 bits (215), Expect = 5.040e-18
Identity = 48/120 (40.00%), Postives = 72/120 (60.00%), Query Frame = 1
Query:   22 AMAANEVYFNSSYNLTSFLEGLGSVFKHIPRDQLSLFGLSDARAAVKEKATVLSYPVAIPSSSQRHTSKDGPLHILWNHRWEWDKGPTSLFAALRSLRDRDISFSVSVVGETGATADKVY 381
            +++A+ V FNS +N +SFL  +G + K IP  +    GL   R  ++ K+ VL +P+  P   Q  T  D  LHI+W HRWE+DKGP   F AL  L++ + +F VSV+GET +   +V+
Sbjct:  119 SLSADVVLFNSEFNKSSFLSNIGKILKLIPDHRPK--GL---REQIEVKSQVLYFPMKFPVK-QPSTRDDSCLHIVWPHRWEFDKGPRDFFDALTQLKECNCNFKVSVLGETFSDNHEVF 232          
BLAST of mRNA_M-pyrifera_M_contig93995.21694.1 vs. uniprot
Match: UPI001402F9CB (DUF3524 domain-containing protein n=2 Tax=Marinobacter TaxID=2742 RepID=UPI001402F9CB)

HSP 1 Score: 87.0 bits (214), Expect = 1.250e-17
Identity = 50/119 (42.02%), Postives = 70/119 (58.82%), Query Frame = 1
Query:    1 QPVTQTSAMAANEVYFNSSYNLTSFLEGLGSVFKHIPRDQLSLFGLSDARAAVKEKATVLSYPVAIPSSSQRHTSKDGPL-HILWNHRWEWDKGPTSLFAALRSLRDRDISFSVSVVGE 354
            Q VT  SA+AA+ + FNS +N TSFL+G+ ++ K +P D++           ++ K+TVL  PV      +R T  +    H+LWNHRWE+DKGP  L A L  L  R + F +SVVGE
Sbjct:  121 QMVTLYSALAADRIAFNSEWNRTSFLDGVAALLKRLP-DRVP----GGVVERIRVKSTVLPVPVPDRLFVERKTDMNRTQPHLLWNHRWEYDKGPDRLLALLAELDRRQLDFRISVVGE 234          
BLAST of mRNA_M-pyrifera_M_contig93995.21694.1 vs. uniprot
Match: UPI00193A5F8D (glycosyltransferase-like domain-containing protein 1 n=1 Tax=Styela clava TaxID=7725 RepID=UPI00193A5F8D)

HSP 1 Score: 86.7 bits (213), Expect = 1.830e-17
Identity = 43/124 (34.68%), Postives = 67/124 (54.03%), Query Frame = 1
Query:   22 AMAANEVYFNSSYNLTSFLEGLGSVFKHIPRDQLSLFGLSDARAAVKEKATVLSYPVA----IPSSSQRHTSKDGPLHILWNHRWEWDKGPTSLFAALRSLRDRDISFSVSVVGETGATADKVY 381
            A+AANE+YFNS YN  SF+  +    + IP      +   D +  ++ K+ VL +P+     I +   +  S +  LHI+W HRWE+DK P + F  L  L++ D  F VS++G+      KV+
Sbjct:  123 ALAANEIYFNSLYNFQSFVMNINEFLRRIPE-----YKPKDIKEKIESKSKVLHFPLTFNKEISTLKVKEDSNEKILHIVWAHRWEYDKDPLTFFKTLFELQENDFKFCVSILGQGFTDVPKVF 241          
BLAST of mRNA_M-pyrifera_M_contig93995.21694.1 vs. uniprot
Match: UPI0020064C68 (DUF3524 domain-containing protein n=1 Tax=Marinobacter bryozoorum TaxID=256324 RepID=UPI0020064C68)

HSP 1 Score: 85.1 bits (209), Expect = 5.820e-17
Identity = 49/113 (43.36%), Postives = 67/113 (59.29%), Query Frame = 1
Query:   19 SAMAANEVYFNSSYNLTSFLEGLGSVFKHIPRDQLSLFGLSDARAAVKEKATVLSYPVAIPSSSQRHTSKD-GPLHILWNHRWEWDKGPTSLFAALRSLRDRDISFSVSVVGE 354
            SA+AA+ V FNS++N  SFL+G       +P D+L      D   +++EK+ V+  P+A    + R+ S D    H+LWNHRWE+DKGP  L   LR LR R   F +SVVGE
Sbjct:  121 SALAADRVLFNSAWNQDSFLQGAYRFIDQMP-DRLP----PDMTVSIEEKSRVVPVPIADRLFTTRNASPDWSQPHLLWNHRWEYDKGPERLLYLLRELRRRQQPFRLSVVGE 228          
BLAST of mRNA_M-pyrifera_M_contig93995.21694.1 vs. uniprot
Match: A0A7J7AUY6_9COLE (Uncharacterized protein n=1 Tax=Abscondita terminalis TaxID=2069292 RepID=A0A7J7AUY6_9COLE)

HSP 1 Score: 85.1 bits (209), Expect = 7.080e-17
Identity = 45/122 (36.89%), Postives = 69/122 (56.56%), Query Frame = 1
Query:   16 TSAMAANEVYFNSSYNLTSFLEGLGSVFKHIPRDQLSLFGLSDARAAVKEKATVLSYPVAIPSSSQRHTSKDGPLHILWNHRWEWDKGPTSLFAALRSLRDRDISFSVSVVGETGATADKVY 381
            T+ +AA+ V FNS YN TSFL+ L +V K  P ++       D R+ ++ K +VL +P+ +             LHI W HRWE+DK P      L+ L+D +++F VS++GET A   +V+
Sbjct:  158 TTCLAADVVLFNSHYNRTSFLDNLINVIKIFPDNKPK-----DLRSKIEAKCSVLYFPLDLRDEFNGDGKYGNVLHIAWPHRWEFDKDPEMFINILKRLKDDNVNFRVSLLGETFADVPEVF 274          
BLAST of mRNA_M-pyrifera_M_contig93995.21694.1 vs. uniprot
Match: A0A2G6KSZ0_9GAMM (Glycosyl transferase family 1 n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2G6KSZ0_9GAMM)

HSP 1 Score: 84.7 bits (208), Expect = 7.750e-17
Identity = 44/112 (39.29%), Postives = 68/112 (60.71%), Query Frame = 1
Query:   19 SAMAANEVYFNSSYNLTSFLEGLGSVFKHIPRDQLSLFGLSDARAAVKEKATVLSYPVAIPSSSQRHTSKDGPLHILWNHRWEWDKGPTSLFAALRSLRDRDISFSVSVVGE 354
            SA+AA+++ FNS+YN  +F  G+ ++ K +P D +     +     +++KA VL  PV I     +   +  P H+LWNHRWE+DKGP  L AAL  L+ R + F +S+VG+
Sbjct:  119 SALAADKLLFNSAYNRDTFFSGVEALLKKMP-DAVP----AGVVKCLQDKAQVLPVPVLIEPPKPKARGRQAP-HLLWNHRWEYDKGPERLLAALERLKARGVDFRLSIVGQ 224          
BLAST of mRNA_M-pyrifera_M_contig93995.21694.1 vs. uniprot
Match: UPI001F169FFA (DUF3524 domain-containing protein n=1 Tax=Halomonas azerica TaxID=2732867 RepID=UPI001F169FFA)

HSP 1 Score: 82.8 bits (203), Expect = 1.230e-16
Identity = 45/121 (37.19%), Postives = 69/121 (57.02%), Query Frame = 1
Query:   19 SAMAANEVYFNSSYNLTSFLEGLGSVFKHIPRDQLSLFGLSDARAAVKEKATVLSYPVAIPSSSQRHTSKDGPLHILWNHRWEWDKGPTSLFAALRSLRDRDISFSVSVVGETGATADKVY 381
            SA+AA+EV FNS YN  SF++G  +  K +P +  +   L   R+     A +L  P+   S    + +K  P  I+WNHRWE+DK P   F AL +L D+DI F ++V+G+    + +V+
Sbjct:  118 SALAADEVVFNSVYNRDSFVDGARAFLKKMPENLPAAARLETLRS----NAHILPVPICPLSCKAPNINK--PTRIIWNHRWEYDKNPQDFFTALYALSDQDIPFELAVMGKQFRQSPEVF 232          
BLAST of mRNA_M-pyrifera_M_contig93995.21694.1 vs. uniprot
Match: A0A8C6UPP5_9GOBI (Glycosyltransferase-like domain-containing protein 1 n=2 Tax=Neogobius melanostomus TaxID=47308 RepID=A0A8C6UPP5_9GOBI)

HSP 1 Score: 84.3 bits (207), Expect = 1.470e-16
Identity = 50/151 (33.11%), Postives = 75/151 (49.67%), Query Frame = 1
Query:   19 SAMAANEVYFNSSYNLTSFLEGLGSVFKHIPRDQLSLFGLSDARAAVKEKATVLSYPVAIPSSSQ---------RHTSKDG---------------------PLHILWNHRWEWDKGPTSLFAALRSLRDRDISFSVSVVGETGATADKVY 381
            S + A++V FNS +NL SFL+ + S  K IP  +     L D + +++ K+ VL +P+ +P  S+           TS D                      PLH++W HRWE DK P  LF  LR L++R + F VSV+GE  +   +V+
Sbjct:  121 SCLVADQVVFNSLFNLNSFLDSMKSFLKQIPDSRPQ--DLQDLQTSIRNKSRVLYFPLELPDVSRFLPPHKLTRSRTSPDRXXXXXXXXXXSSESERSEPVRPLHLVWPHRWEHDKDPELLFLTLRRLKERGLDFRVSVLGERFSQVPEVF 269          
BLAST of mRNA_M-pyrifera_M_contig93995.21694.1 vs. uniprot
Match: A0A3B0ZZ42_9ZZZZ (Glycosyl transferase, group 1 n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0ZZ42_9ZZZZ)

HSP 1 Score: 84.0 bits (206), Expect = 1.500e-16
Identity = 42/118 (35.59%), Postives = 66/118 (55.93%), Query Frame = 1
Query:   22 AMAANEVYFNSSYNLTSFLEGLGSVFKHIPRDQLSLFGLSDARAAVKEKATVLSYPVAIPSSSQRHTSKDGPLHILWNHRWEWDKGPTSLFAALRSLRDRDISFSVSVVGETGATADK 375
            A+ A+++ FN+ YN  +F+ GLG   K +P D++      D    + +K T++S P+ I  + Q     +    +LWNHRWE+DKGP  L A L  LR RD  F ++++G+   T  K
Sbjct:  119 ALCADQLVFNTDYNYQTFITGLGKFLKKMP-DEVP----EDTLDIIIKKHTIISVPITINETKQIKNKGNPTPVLLWNHRWEYDKGPNQLDAFLNVLRQRDFMFKINLIGQKFRTIPK 231          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93995.21694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R6PQ66_9GAMM6.640e-1942.11Glycosyltransferase family 4 n=1 Tax=Neptunomonas ... [more]
UPI00096B58305.040e-1840.00glycosyltransferase-like domain-containing protein... [more]
UPI001402F9CB1.250e-1742.02DUF3524 domain-containing protein n=2 Tax=Marinoba... [more]
UPI00193A5F8D1.830e-1734.68glycosyltransferase-like domain-containing protein... [more]
UPI0020064C685.820e-1743.36DUF3524 domain-containing protein n=1 Tax=Marinoba... [more]
A0A7J7AUY6_9COLE7.080e-1736.89Uncharacterized protein n=1 Tax=Abscondita termina... [more]
A0A2G6KSZ0_9GAMM7.750e-1739.29Glycosyl transferase family 1 n=1 Tax=Gammaproteob... [more]
UPI001F169FFA1.230e-1637.19DUF3524 domain-containing protein n=1 Tax=Halomona... [more]
A0A8C6UPP5_9GOBI1.470e-1633.11Glycosyltransferase-like domain-containing protein... [more]
A0A3B0ZZ42_9ZZZZ1.500e-1635.59Glycosyl transferase, group 1 n=1 Tax=hydrothermal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93995contigM-pyrifera_M_contig93995:337..726 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score82.0
Seed ortholog evalue2.1e-13
Seed eggNOG ortholog1504981.KO116_2621
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF3524)
EggNOG OGs1NA28@1224,1RQBV@1236,1XI5J@135619,COG0438@1,COG0438@2
COG Functional cat.M
Best tax levelOceanospirillales
Best eggNOG OGNA|NA|NA
Exons1
Model size390
Cds size366
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816853.0907977-UTR-M-pyrifera_M_contig93995:336..3601622816853.0907977-UTR-M-pyrifera_M_contig93995:336..360Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig93995 337..360 +
1692278216.9295478-UTR-M-pyrifera_M_contig93995:336..3601692278216.9295478-UTR-M-pyrifera_M_contig93995:336..360Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig93995 337..360 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816853.10208-CDS-M-pyrifera_M_contig93995:360..7261622816853.10208-CDS-M-pyrifera_M_contig93995:360..726Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93995 361..726 +
1692278216.9436553-CDS-M-pyrifera_M_contig93995:360..7261692278216.9436553-CDS-M-pyrifera_M_contig93995:360..726Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93995 361..726 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93995.21694.1prot_M-pyrifera_M_contig93995.21694.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93995 361..726 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93995.21694.1

>prot_M-pyrifera_M_contig93995.21694.1 ID=prot_M-pyrifera_M_contig93995.21694.1|Name=mRNA_M-pyrifera_M_contig93995.21694.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
MAANEVYFNSSYNLTSFLEGLGSVFKHIPRDQLSLFGLSDARAAVKEKAT
VLSYPVAIPSSSQRHTSKDGPLHILWNHRWEWDKGPTSLFAALRSLRDRD
ISFSVSVVGETGATADKVYSS*
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mRNA from alignment at M-pyrifera_M_contig93995:337..726+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93995.21694.1 ID=mRNA_M-pyrifera_M_contig93995.21694.1|Name=mRNA_M-pyrifera_M_contig93995.21694.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig93995:337..726+ (Macrocystis pyrifera P11B4 male)
CAACCTGTGACGCAGACATCCGCGATGGCTGCGAATGAGGTGTACTTCAA CTCGAGCTACAACCTCACCTCCTTTCTTGAGGGCCTTGGAAGCGTTTTCA AACACATTCCACGCGACCAGCTCTCCCTCTTTGGCCTCAGCGACGCGAGG GCTGCGGTGAAGGAGAAGGCAACGGTCCTTTCCTATCCCGTCGCCATCCC GTCTTCATCTCAGAGGCACACTTCCAAAGATGGCCCTCTTCATATTCTTT GGAACCACAGATGGGAATGGGACAAGGGCCCTACCTCTCTTTTCGCTGCA CTCCGCTCGTTACGCGATCGGGATATTTCGTTCTCTGTTTCTGTTGTTGG TGAAACAGGTGCCACTGCTGATAAGGTATATTCTTCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93995:337..726+

>mRNA_M-pyrifera_M_contig93995.21694.1 ID=mRNA_M-pyrifera_M_contig93995.21694.1|Name=mRNA_M-pyrifera_M_contig93995.21694.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig93995:337..726+ (Macrocystis pyrifera P11B4 male)
ATGGCTGCGAATGAGGTGTACTTCAACTCGAGCTACAACCTCACCTCCTT
TCTTGAGGGCCTTGGAAGCGTTTTCAAACACATTCCACGCGACCAGCTCT
CCCTCTTTGGCCTCAGCGACGCGAGGGCTGCGGTGAAGGAGAAGGCAACG
GTCCTTTCCTATCCCGTCGCCATCCCGTCTTCATCTCAGAGGCACACTTC
CAAAGATGGCCCTCTTCATATTCTTTGGAACCACAGATGGGAATGGGACA
AGGGCCCTACCTCTCTTTTCGCTGCACTCCGCTCGTTACGCGATCGGGAT
ATTTCGTTCTCTGTTTCTGTTGTTGGTGAAACAGGTGCCACTGCTGATAA
GGTATATTCTTCCTGAATGGCTGCGAATGAGGTGTACTTCAACTCGAGCT
ACAACCTCACCTCCTTTCTTGAGGGCCTTGGAAGCGTTTTCAAACACATT
CCACGCGACCAGCTCTCCCTCTTTGGCCTCAGCGACGCGAGGGCTGCGGT
GAAGGAGAAGGCAACGGTCCTTTCCTATCCCGTCGCCATCCCGTCTTCAT
CTCAGAGGCACACTTCCAAAGATGGCCCTCTTCATATTCTTTGGAACCAC
AGATGGGAATGGGACAAGGGCCCTACCTCTCTTTTCGCTGCACTCCGCTC
GTTACGCGATCGGGATATTTCGTTCTCTGTTTCTGTTGTTGGTGAAACAG
GTGCCACTGCTGATAAGGTATATTCTTCCTGA
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