mRNA_M-pyrifera_M_contig93984.21689.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93984.21689.1
Unique NamemRNA_M-pyrifera_M_contig93984.21689.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig93984.21689.1 vs. uniprot
Match: A0A7Y2N6Y3_9ACTN (DUF58 domain-containing protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2N6Y3_9ACTN)

HSP 1 Score: 310 bits (795), Expect = 2.750e-101
Identity = 159/242 (65.70%), Postives = 201/242 (83.06%), Query Frame = 1
Query:   13 LVLRTSGPLGLMVRQRNVEVDTTLRVLPLYRSAKQAELATKQARLQQVGLRSARSRGGGTEFDHLREMTADDETRRIDWAATARSQRPVVRSYRAEQNQSVLCLLDSGRVMAGRIAGIPRFEYGMDAAMLLADLSTGLGDRMGLVAFDRTVHTTIQPSNRRSQRSMIAERLFDIEPALAESDYRSMVTHVAARYRRRHMLVLLTELTEEVVESFVLPALPILTRIHLVAVASVQDPDVLAWA 738
            LVLRTSGPLGL+ +QR+ +V+TTLRVLP +RSA+QAEL+ K+ARL +VG+R+AR RG GT+FD LREM  DDE+RRIDWAATAR+ +P+VR +R E+NQ+VL LLDSGRVMAGRIA +PR E+ MD AM+LA+L+TGLGD+MGLVAFD+ VHTTI  +NRR QRS IAE+LFD++PAL  S+Y  MVT V A+ RRR +LVL+T+L E+ V  ++LPALP+L R H+V VA+V DPDV  WA
Sbjct:  144 LVLRTSGPLGLIQKQRSYKVNTTLRVLPPFRSAEQAELSLKKARLLEVGIRAARVRGSGTDFDSLREMGPDDESRRIDWAATARTGKPIVRVFRTERNQTVLVLLDSGRVMAGRIADVPRIEHAMDGAMMLAELTTGLGDKMGLVAFDQDVHTTIPATNRRRQRSAIAEQLFDLQPALVSSNYSLMVTRVMAKQRRRALLVLMTDLEEQAVREYLLPALPLLVRTHVVVVAAVSDPDVHYWA 385          
BLAST of mRNA_M-pyrifera_M_contig93984.21689.1 vs. uniprot
Match: A0A7Y2GRB1_9ACTN (DUF58 domain-containing protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2GRB1_9ACTN)

HSP 1 Score: 308 bits (788), Expect = 3.140e-100
Identity = 156/241 (64.73%), Postives = 195/241 (80.91%), Query Frame = 1
Query:   13 LVLRTSGPLGLMVRQRNVEVDTTLRVLPLYRSAKQAELATKQARLQQVGLRSARSRGGGTEFDHLREMTADDETRRIDWAATARSQRPVVRSYRAEQNQSVLCLLDSGRVMAGRIAGIPRFEYGMDAAMLLADLSTGLGDRMGLVAFDRTVHTTIQPSNRRSQRSMIAERLFDIEPALAESDYRSMVTHVAARYRRRHMLVLLTELTEEVVESFVLPALPILTRIHLVAVASVQDPDVLAW 735
            +V+RT GPLGL+ +QR+    TTLRVLP +RSA+QAEL+ K+AR+ +VG+R+AR+RG GT+FD LREM  DDE+RRIDWAATAR+ +P+VR YR E+NQ+V  LLDSGR MAGRIA +PR E+ MD AM+LA+L+TGLGD+MGL AFD+TVHTTI  SNRR QRS IAE LFD+ PAL  S+Y+ MVTHV AR RRR +LVL+T+L E+ V  F+LPALP+L R H+V VASV DPD+  W
Sbjct:  144 IVVRTHGPLGLVGKQRSFHAPTTLRVLPPFRSAEQAELSLKKARILEVGIRAARARGSGTDFDSLREMGPDDESRRIDWAATARTGKPIVRVYRTERNQTVTVLLDSGRAMAGRIADVPRIEHAMDGAMMLAELTTGLGDKMGLFAFDQTVHTTIPASNRRRQRSAIAEELFDLHPALVTSNYQHMVTHVLARQRRRALLVLMTDLEEQAVREFLLPALPMLVRTHVVVVASVSDPDIRYW 384          
BLAST of mRNA_M-pyrifera_M_contig93984.21689.1 vs. uniprot
Match: A0A6J4IUV9_9ACTN (DUF58 domain-containing protein n=1 Tax=uncultured Acidimicrobiales bacterium TaxID=310071 RepID=A0A6J4IUV9_9ACTN)

HSP 1 Score: 271 bits (694), Expect = 3.290e-86
Identity = 140/246 (56.91%), Postives = 178/246 (72.36%), Query Frame = 1
Query:    1 ELRHLVLRTSGPLGLMVRQRNVEVDTTLRVLPLYRSAKQAELATKQARLQQVGLRSARSRGGGTEFDHLREMTADDETRRIDWAATARSQRPVVRSYRAEQNQSVLCLLDSGRVMAGRIAGIPRFEYGMDAAMLLADLSTGLGDRMGLVAFDRTVHTTIQPSNRRSQRSMIAERLFDIEPALAESDYRSMVTHVAARYRRRHMLVLLTELTEEVVESFVLPALPILTRIHLVAVASVQDPDVLAWA 738
            E+  + +RT GPLGL  RQR   V   LRV P++ S ++AEL   +AR+ +VGLRSA+ RGGGTEFD LRE + DDE RRIDWAATARS RP VR+YRAE+NQ+VL  LD+GRVMAGR+AG+PR E+ MDA M+L  ++T LGDR GL+AFDR V   + P++  +Q + + E ++++EP L ESDYR        R+RRR MLVL T+L EE V   +LPALP++ R HLV VASVQDP VL WA
Sbjct:  128 EIGEVTVRTEGPLGLGARQRRRSVPGVLRVFPIFGSRREAELRIGKARILEVGLRSAKGRGGGTEFDALREYSVDDEFRRIDWAATARSGRPTVRTYRAERNQTVLLFLDNGRVMAGRVAGVPRLEHAMDAVMMLTSVATRLGDRAGLIAFDRDVRAVVPPAHTSAQLTRVTEAMYELEPELLESDYRGAFVEGLTRFRRRAMLVLFTDLAEEAVAETLLPALPLVLRDHLVVVASVQDPAVLRWA 373          
BLAST of mRNA_M-pyrifera_M_contig93984.21689.1 vs. uniprot
Match: A0A349BBT2_9ACTN (DUF58 domain-containing protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349BBT2_9ACTN)

HSP 1 Score: 268 bits (686), Expect = 6.460e-86
Identity = 135/242 (55.79%), Postives = 177/242 (73.14%), Query Frame = 1
Query:   13 LVLRTSGPLGLMVRQRNVEVDTTLRVLPLYRSAKQAELATKQARLQQVGLRSARSRGGGTEFDHLREMTADDETRRIDWAATARSQRPVVRSYRAEQNQSVLCLLDSGRVMAGRIAGIPRFEYGMDAAMLLADLSTGLGDRMGLVAFDRTVHTTIQPSNRRSQRSMIAERLFDIEPALAESDYRSMVTHVAARYRRRHMLVLLTELTEEVVESFVLPALPILTRIHLVAVASVQDPDVLAWA 738
            LV R  GPLGL  RQ    V  +LRV P +RS ++AEL   QAR+ +VG+RSA  RGGGT+FD LRE T DDE+RRIDWAATAR+ RP+VR++RAE+NQ+V+ L D+GRVMAGR+AG+PR E+ MDAA+L+  ++T LGDR GL+ FDRTV   + P + R Q   + + L+++EP LAESDYR        R+R+R ++VLLT+L E+ V   +LPALP+LTR HLV V ++QDP V AWA
Sbjct:   71 LVWRVEGPLGLAARQGRRSVPASLRVHPRFRSREEAELKIDQARILEVGMRSATGRGGGTDFDQLREYTVDDESRRIDWAATARAGRPIVRTFRAERNQNVVVLFDNGRVMAGRVAGVPRAEFAMDAALLVTTVATRLGDRCGLLTFDRTVRGVVAPGHGRDQVGRVTDALYELEPVLAESDYRGAFNETLVRFRKRSLIVLLTDLVEQAVGESLLPALPVLTRSHLVLVGAIQDPQVRAWA 312          
BLAST of mRNA_M-pyrifera_M_contig93984.21689.1 vs. uniprot
Match: A0A7V8X176_9ACTN (DUF58 domain-containing protein (Fragment) n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V8X176_9ACTN)

HSP 1 Score: 267 bits (683), Expect = 4.020e-85
Identity = 135/242 (55.79%), Postives = 179/242 (73.97%), Query Frame = 1
Query:   13 LVLRTSGPLGLMVRQRNVEVDTTLRVLPLYRSAKQAELATKQARLQQVGLRSARSRGGGTEFDHLREMTADDETRRIDWAATARSQRPVVRSYRAEQNQSVLCLLDSGRVMAGRIAGIPRFEYGMDAAMLLADLSTGLGDRMGLVAFDRTVHTTIQPSNRRSQRSMIAERLFDIEPALAESDYRSMVTHVAARYRRRHMLVLLTELTEEVVESFVLPALPILTRIHLVAVASVQDPDVLAWA 738
            L +R++GPLGL  RQ    V + LRV P +RS  +AEL  +QAR+ +VGLRSA+ RG GT+FD LR+   DD+ RRIDWAATAR+ +P+VR+YRAE+NQ+++ LLD+GRVMAGR+ G+PR E+ MDA M ++ ++T LGD++G+VAFDRTV   + PS RR     I E ++D+EP L ESDYR   T   AR+RRR MLVLLT+L E+ V   +LPALP++ R HLV V +VQDPDV+ WA
Sbjct:  132 LSVRSAGPLGLTARQARRAVPSILRVYPSFRSRSEAELRVEQARVLEVGLRSAKGRGSGTDFDQLRDYGPDDDHRRIDWAATARTGKPIVRTYRAERNQTIVVLLDNGRVMAGRVGGVPRVEHAMDAVMCVSTVATRLGDKVGMVAFDRTVRAVVPPSARRDHVGRITEAMYDLEPELLESDYRGAFTTTLARFRRRTMLVLLTDLVEQAVGESLLPALPLVARRHLVVVGAVQDPDVVRWA 373          
BLAST of mRNA_M-pyrifera_M_contig93984.21689.1 vs. uniprot
Match: UPI001D10021B (DUF58 domain-containing protein n=1 Tax=Aquihabitans sp. Kera 3 TaxID=2884263 RepID=UPI001D10021B)

HSP 1 Score: 268 bits (686), Expect = 6.620e-85
Identity = 139/246 (56.50%), Postives = 179/246 (72.76%), Query Frame = 1
Query:    1 ELRHLVLRTSGPLGLMVRQRNVEVDTTLRVLPLYRSAKQAELATKQARLQQVGLRSARSRGGGTEFDHLREMTADDETRRIDWAATARSQRPVVRSYRAEQNQSVLCLLDSGRVMAGRIAGIPRFEYGMDAAMLLADLSTGLGDRMGLVAFDRTVHTTIQPSNRRSQRSMIAERLFDIEPALAESDYRSMVTHVAARYRRRHMLVLLTELTEEVVESFVLPALPILTRIHLVAVASVQDPDVLAWA 738
            EL  L +R  G LGL  RQR+V + T LRV P + S ++AE+  ++AR+ +VGLRSAR  G GTEF+ LRE   DDE RRIDW ATAR+ +P+VR+YRAE+NQSV+ +LD+GR+MAG++ G+PR E+GMDAAM+L  ++T LGDR GLVAFDR V   + P+    Q   ++E L+ +EP LAESDY      V ARYRRR MLV+LT+L E+ V   VLPALP++TR HLV VA+VQDP VL WA
Sbjct:  136 ELDVLTVRIEGRLGLGARQRSVPMPTVLRVHPAFPSREEAEIRIRRARILEVGLRSARGLGSGTEFEQLREYGPDDEFRRIDWTATARAGKPIVRTYRAERNQSVIVMLDNGRIMAGKVDGVPRIEHGMDAAMMLTAVATRLGDRCGLVAFDRRVRAVVPPARHHDQVGRVSEALYRLEPELAESDYTGAFAEVVARYRRRAMLVVLTDLNEQAVADSVLPALPLVTRTHLVVVAAVQDPQVLEWA 381          
BLAST of mRNA_M-pyrifera_M_contig93984.21689.1 vs. uniprot
Match: A0A431IP12_9ACTN (DUF58 domain-containing protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A431IP12_9ACTN)

HSP 1 Score: 268 bits (684), Expect = 1.320e-84
Identity = 140/246 (56.91%), Postives = 180/246 (73.17%), Query Frame = 1
Query:    1 ELRHLVLRTSGPLGLMVRQRNVEVDTTLRVLPLYRSAKQAELATKQARLQQVGLRSARSRGGGTEFDHLREMTADDETRRIDWAATARSQRPVVRSYRAEQNQSVLCLLDSGRVMAGRIAGIPRFEYGMDAAMLLADLSTGLGDRMGLVAFDRTVHTTIQPSNRRSQRSMIAERLFDIEPALAESDYRSMVTHVAARYRRRHMLVLLTELTEEVVESFVLPALPILTRIHLVAVASVQDPDVLAWA 738
            EL  L +R  G LGL  RQR+V + T LRV P + S ++AE+  ++AR+ +VGLRSAR  GGGTEF+ LRE   DDE RRIDW ATAR+ +P+VR+YRAE+NQSV+ +LD+GR+MAGR+A +PR E+ MDAA++L  +ST LGDR GLVAFDR V   + P+    Q S ++E L+ +EP LAESDY      V AR+RRR MLV+LT+L E+ V   VLPALP++TR HLV VA+VQDP VL WA
Sbjct:  136 ELDRLTIRIEGRLGLGARQRSVPLATVLRVHPAFPSREEAEIRIRRARILEVGLRSARGLGGGTEFEQLREYGPDDEFRRIDWTATARAGKPIVRTYRAERNQSVVVVLDNGRIMAGRVAEVPRVEHAMDAALMLTAVSTRLGDRCGLVAFDRRVRAVVPPAWHSDQLSRVSEALYRLEPELAESDYTGAFAEVVARFRRRAMLVVLTDLNEQAVADSVLPALPLITRTHLVVVAAVQDPQVLRWA 381          
BLAST of mRNA_M-pyrifera_M_contig93984.21689.1 vs. uniprot
Match: UPI001F29901A (DUF58 domain-containing protein n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001F29901A)

HSP 1 Score: 264 bits (675), Expect = 2.190e-83
Identity = 134/246 (54.47%), Postives = 179/246 (72.76%), Query Frame = 1
Query:    1 ELRHLVLRTSGPLGLMVRQRNVEVDTTLRVLPLYRSAKQAELATKQARLQQVGLRSARSRGGGTEFDHLREMTADDETRRIDWAATARSQRPVVRSYRAEQNQSVLCLLDSGRVMAGRIAGIPRFEYGMDAAMLLADLSTGLGDRMGLVAFDRTVHTTIQPSNRRSQRSMIAERLFDIEPALAESDYRSMVTHVAARYRRRHMLVLLTELTEEVVESFVLPALPILTRIHLVAVASVQDPDVLAWA 738
            E+  + LR  GPLGL  RQR   +   LRV P +RS  +AEL   +AR+ +VGLRSAR  GGGTEF+ LR+ T DDE RRIDWAATARS + +VR+YRAE+NQ+V+ LLD+GRVMAGR+ G+PR E+ MDA M+L  +++ LGDR GLVAFDR+V   + P + R Q + + E ++++EP LAESDYR   T   AR+RRR MLV+ T+L E+ V   +LPAL ++ R HLV VA+V+DP+V++WA
Sbjct:  125 EVEGMTLRVEGPLGLASRQRTRPLPAVLRVYPSFRSRAEAELRIDKARIVEVGLRSARGHGGGTEFEQLRDYTVDDEFRRIDWAATARSGKAIVRTYRAERNQTVISLLDNGRVMAGRVDGVPRVEHAMDAVMMLTAVASRLGDRAGLVAFDRSVRAVVPPGHTRDQLTRVTEAMYELEPQLAESDYRGAFTQTLARFRRRAMLVVFTDLVEQAVGETLLPALGLIARSHLVVVAAVRDPEVVSWA 370          
BLAST of mRNA_M-pyrifera_M_contig93984.21689.1 vs. uniprot
Match: A0A7V9EY18_9ACTN (DUF58 domain-containing protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9EY18_9ACTN)

HSP 1 Score: 263 bits (671), Expect = 9.530e-83
Identity = 137/246 (55.69%), Postives = 174/246 (70.73%), Query Frame = 1
Query:    1 ELRHLVLRTSGPLGLMVRQRNVEVDTTLRVLPLYRSAKQAELATKQARLQQVGLRSARSRGGGTEFDHLREMTADDETRRIDWAATARSQRPVVRSYRAEQNQSVLCLLDSGRVMAGRIAGIPRFEYGMDAAMLLADLSTGLGDRMGLVAFDRTVHTTIQPSNRRSQRSMIAERLFDIEPALAESDYRSMVTHVAARYRRRHMLVLLTELTEEVVESFVLPALPILTRIHLVAVASVQDPDVLAWA 738
            E+  +V+R  GPLGL  RQR V +   L V P YRSA +AEL   +ARL +VGLRSA  RGGGTEFD LRE + DDETRRIDWAATARS R +VR+YRAE+NQ+VLCLLD+GR MA R+ G+PR E+ MDA M+L  +++ LGDR+GL+AFDR V   + P +   Q + + E L+ +EP L ESDYR   T   +R+RRR +LVL TEL E+     +LPALP++ R HLV +A+V DP V  WA
Sbjct:  128 EVGEVVVRVDGPLGLAARQRRVMLPAVLAVHPRYRSAAEAELRINRARLLEVGLRSAAGRGGGTEFDALREYSVDDETRRIDWAATARSGRTIVRTYRAERNQTVLCLLDNGRTMAARVDGVPRVEHAMDAVMMLTHVASRLGDRVGLLAFDRDVRAVVGPRHGAGQLARVTEALYQLEPVLVESDYRMAFTTALSRFRRRSLLVLCTELAEQAFTETLLPALPLVGRHHLVVIAAVVDPAVARWA 373          
BLAST of mRNA_M-pyrifera_M_contig93984.21689.1 vs. uniprot
Match: A0A520Y346_9ACTN (DUF58 domain-containing protein n=3 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A520Y346_9ACTN)

HSP 1 Score: 260 bits (665), Expect = 7.200e-82
Identity = 138/245 (56.33%), Postives = 179/245 (73.06%), Query Frame = 1
Query:    4 LRHLVLRTSGPLGLMVRQRNVEVDTTLRVLPLYRSAKQAELATKQARLQQVGLRSARSRGGGTEFDHLREMTADDETRRIDWAATARSQRPVVRSYRAEQNQSVLCLLDSGRVMAGRIAGIPRFEYGMDAAMLLADLSTGLGDRMGLVAFDRTVHTTIQPSNRRSQRSMIAERLFDIEPALAESDYRSMVTHVAARYRRRHMLVLLTELTEEVVESFVLPALPILTRIHLVAVASVQDPDVLAWA 738
            L  LV+RT GPLG   RQ+   +   LRVLP + S  +AEL  +++RL+ VGLRSAR+RGGG+EF+ LR+ T DDE R+IDW+ATAR+ R +VR+YRAE+NQ+V+ +LD+GR+MAGR+A +PR EY MDA M L  LSTGLGDR GL+ FD+ V  ++  SNR +Q   I + +FDIEP LAESDYR   T    R+ RR MLV+ TEL E+ V  F+LPALP+LTR H+V +ASV+DP V  WA
Sbjct:  128 LGELVVRTYGPLGFAGRQKARYLPAELRVLPRFPSRAEAELRQRKSRLE-VGLRSARARGGGSEFEQLRDFTIDDEFRKIDWSATARAGRTIVRTYRAERNQTVINVLDNGRLMAGRVADVPRVEYAMDAIMALTTLSTGLGDRAGLLVFDKEVRASVPASNRSTQLGRITDAMFDIEPELAESDYRGAFTETLVRFNRRTMLVIHTELAEQTVGEFLLPALPLLTRSHVVVIASVRDPLVEQWA 371          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93984.21689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y2N6Y3_9ACTN2.750e-10165.70DUF58 domain-containing protein n=1 Tax=Acidimicro... [more]
A0A7Y2GRB1_9ACTN3.140e-10064.73DUF58 domain-containing protein n=1 Tax=Acidimicro... [more]
A0A6J4IUV9_9ACTN3.290e-8656.91DUF58 domain-containing protein n=1 Tax=uncultured... [more]
A0A349BBT2_9ACTN6.460e-8655.79DUF58 domain-containing protein (Fragment) n=1 Tax... [more]
A0A7V8X176_9ACTN4.020e-8555.79DUF58 domain-containing protein (Fragment) n=1 Tax... [more]
UPI001D10021B6.620e-8556.50DUF58 domain-containing protein n=1 Tax=Aquihabita... [more]
A0A431IP12_9ACTN1.320e-8456.91DUF58 domain-containing protein n=1 Tax=Acidimicro... [more]
UPI001F29901A2.190e-8354.47DUF58 domain-containing protein n=1 Tax=Rhabdother... [more]
A0A7V9EY18_9ACTN9.530e-8355.69DUF58 domain-containing protein n=1 Tax=Acidimicro... [more]
A0A520Y346_9ACTN7.200e-8256.33DUF58 domain-containing protein n=3 Tax=Acidimicro... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93984contigM-pyrifera_M_contig93984:8..745 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score252.7
Seed ortholog evalue1.8e-64
Seed eggNOG ortholog1229780.BN381_10075
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function DUF58
EggNOG OGs2GK9A@201174,3UXC5@52018,COG1721@1,COG1721@2
COG Functional cat.S
Best tax levelunclassified Actinobacteria (class)
Best eggNOG OGNA|NA|NA
Exons1
Model size738
Cds size738
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816852.9071658-CDS-M-pyrifera_M_contig93984:7..7451622816852.9071658-CDS-M-pyrifera_M_contig93984:7..745Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93984 8..745 -
1692278216.844164-CDS-M-pyrifera_M_contig93984:7..7451692278216.844164-CDS-M-pyrifera_M_contig93984:7..745Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93984 8..745 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93984.21689.1prot_M-pyrifera_M_contig93984.21689.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93984 8..745 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93984.21689.1

>prot_M-pyrifera_M_contig93984.21689.1 ID=prot_M-pyrifera_M_contig93984.21689.1|Name=mRNA_M-pyrifera_M_contig93984.21689.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=246bp
ELRHLVLRTSGPLGLMVRQRNVEVDTTLRVLPLYRSAKQAELATKQARLQ
QVGLRSARSRGGGTEFDHLREMTADDETRRIDWAATARSQRPVVRSYRAE
QNQSVLCLLDSGRVMAGRIAGIPRFEYGMDAAMLLADLSTGLGDRMGLVA
FDRTVHTTIQPSNRRSQRSMIAERLFDIEPALAESDYRSMVTHVAARYRR
RHMLVLLTELTEEVVESFVLPALPILTRIHLVAVASVQDPDVLAWA
back to top

mRNA from alignment at M-pyrifera_M_contig93984:8..745-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93984.21689.1 ID=mRNA_M-pyrifera_M_contig93984.21689.1|Name=mRNA_M-pyrifera_M_contig93984.21689.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig93984:8..745- (Macrocystis pyrifera P11B4 male)
GAGTTGCGACATCTGGTGCTGCGGACCAGCGGCCCGCTGGGGTTGATGGT CAGACAACGCAATGTCGAAGTCGACACGACGCTGCGAGTGCTGCCGCTCT ACCGGTCGGCGAAACAGGCCGAGCTGGCGACCAAGCAGGCTCGGCTTCAG CAAGTCGGTCTGCGTTCGGCTCGAAGTCGGGGCGGTGGCACCGAGTTCGA TCATCTGCGTGAGATGACCGCCGACGACGAGACCCGGCGCATCGACTGGG CAGCGACCGCCCGGTCACAGCGTCCTGTCGTGCGCAGCTACCGGGCCGAG CAGAACCAGAGCGTGCTCTGCCTGCTCGACTCCGGTCGGGTCATGGCCGG ACGTATCGCCGGCATTCCCCGGTTCGAATACGGCATGGACGCAGCGATGC TCCTGGCCGACCTCTCGACCGGGCTCGGCGACCGGATGGGTCTGGTCGCC TTCGACCGGACGGTCCACACCACCATCCAGCCGTCGAACCGCCGGTCCCA ACGGTCGATGATCGCCGAGCGACTGTTCGACATCGAGCCGGCGCTTGCCG AGTCCGACTACCGCTCGATGGTCACCCATGTGGCGGCCCGATACCGCCGC AGGCACATGCTCGTGCTCCTGACCGAACTGACCGAGGAAGTGGTCGAGTC GTTCGTGTTGCCGGCCCTTCCCATCCTCACACGTATACATCTGGTGGCCG TCGCATCTGTCCAAGATCCCGACGTGCTGGCCTGGGCA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig93984:8..745-

>mRNA_M-pyrifera_M_contig93984.21689.1 ID=mRNA_M-pyrifera_M_contig93984.21689.1|Name=mRNA_M-pyrifera_M_contig93984.21689.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1476bp|location=Sequence derived from alignment at M-pyrifera_M_contig93984:8..745- (Macrocystis pyrifera P11B4 male)
GAGTTGCGACATCTGGTGCTGCGGACCAGCGGCCCGCTGGGGTTGATGGT
CAGACAACGCAATGTCGAAGTCGACACGACGCTGCGAGTGCTGCCGCTCT
ACCGGTCGGCGAAACAGGCCGAGCTGGCGACCAAGCAGGCTCGGCTTCAG
CAAGTCGGTCTGCGTTCGGCTCGAAGTCGGGGCGGTGGCACCGAGTTCGA
TCATCTGCGTGAGATGACCGCCGACGACGAGACCCGGCGCATCGACTGGG
CAGCGACCGCCCGGTCACAGCGTCCTGTCGTGCGCAGCTACCGGGCCGAG
CAGAACCAGAGCGTGCTCTGCCTGCTCGACTCCGGTCGGGTCATGGCCGG
ACGTATCGCCGGCATTCCCCGGTTCGAATACGGCATGGACGCAGCGATGC
TCCTGGCCGACCTCTCGACCGGGCTCGGCGACCGGATGGGTCTGGTCGCC
TTCGACCGGACGGTCCACACCACCATCCAGCCGTCGAACCGCCGGTCCCA
ACGGTCGATGATCGCCGAGCGACTGTTCGACATCGAGCCGGCGCTTGCCG
AGTCCGACTACCGCTCGATGGTCACCCATGTGGCGGCCCGATACCGCCGC
AGGCACATGCTCGTGCTCCTGACCGAACTGACCGAGGAAGTGGTCGAGTC
GTTCGTGTTGCCGGCCCTTCCCATCCTCACACGTATACATCTGGTGGCCG
TCGCATCTGTCCAAGATCCCGACGTGCTGGCCTGGGCAGAGTTGCGACAT
CTGGTGCTGCGGACCAGCGGCCCGCTGGGGTTGATGGTCAGACAACGCAA
TGTCGAAGTCGACACGACGCTGCGAGTGCTGCCGCTCTACCGGTCGGCGA
AACAGGCCGAGCTGGCGACCAAGCAGGCTCGGCTTCAGCAAGTCGGTCTG
CGTTCGGCTCGAAGTCGGGGCGGTGGCACCGAGTTCGATCATCTGCGTGA
GATGACCGCCGACGACGAGACCCGGCGCATCGACTGGGCAGCGACCGCCC
GGTCACAGCGTCCTGTCGTGCGCAGCTACCGGGCCGAGCAGAACCAGAGC
GTGCTCTGCCTGCTCGACTCCGGTCGGGTCATGGCCGGACGTATCGCCGG
CATTCCCCGGTTCGAATACGGCATGGACGCAGCGATGCTCCTGGCCGACC
TCTCGACCGGGCTCGGCGACCGGATGGGTCTGGTCGCCTTCGACCGGACG
GTCCACACCACCATCCAGCCGTCGAACCGCCGGTCCCAACGGTCGATGAT
CGCCGAGCGACTGTTCGACATCGAGCCGGCGCTTGCCGAGTCCGACTACC
GCTCGATGGTCACCCATGTGGCGGCCCGATACCGCCGCAGGCACATGCTC
GTGCTCCTGACCGAACTGACCGAGGAAGTGGTCGAGTCGTTCGTGTTGCC
GGCCCTTCCCATCCTCACACGTATACATCTGGTGGCCGTCGCATCTGTCC
AAGATCCCGACGTGCTGGCCTGGGCA
back to top