mRNA_M-pyrifera_M_contig93983.21688.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93983.21688.1
Unique NamemRNA_M-pyrifera_M_contig93983.21688.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig93983.21688.1 vs. uniprot
Match: A0A355SP63_9GAMM (HrpB_C domain-containing protein n=1 Tax=Halieaceae bacterium TaxID=2026743 RepID=A0A355SP63_9GAMM)

HSP 1 Score: 481 bits (1237), Expect = 9.290e-169
Identity = 235/246 (95.53%), Postives = 240/246 (97.56%), Query Frame = 1
Query:    1 VGVVARVEWEDRQERFVAERRRQVGQLLPPRETLAVVPAGARDDALRALLHRRGLQLLPWTPWLGQWRARVRLLRHLQPARPDAPWPALDDASLLATIDDWLLPHLGGVTRLADFGRVDLRSILAGLLPWPLPRELQRLAPERIEVPSGNNISIDYTGDTPVLAVKLQEMFGCEDTPRIAGGLQPLQLQLLSPARRPLQVTQDLATFWRNVYPEVKKEMKGRYPKHPWPDNPLTAVATHLTRKRAE 738
            V VV RVEW+DRQERFVAERRRQVGQLL  RETLAVVPAGARD+ALRALLHRRGLQ+LPWTPWL QWRARVRLLRHLQPARPDA WPALDDA+LLATIDDWLLPHLGGVTRLADFGRVDLRSILAGLLPWPLPREL+RLAPERIEVPSGNNISIDYTGDTPVLAVKLQEMFGCEDTPRIAGGLQPLQLQLLSPARRPLQVTQDLATFWRNVYPEVKKEMKGRYPKHPWPDNPLTAVATHLTRKRAE
Sbjct:  168 VRVVERVEWDDRQERFVAERRRQVGQLLLQRETLAVVPAGARDEALRALLHRRGLQVLPWTPWLEQWRARVRLLRHLQPARPDASWPALDDATLLATIDDWLLPHLGGVTRLADFGRVDLRSILAGLLPWPLPRELERLAPERIEVPSGNNISIDYTGDTPVLAVKLQEMFGCEDTPRIAGGLQPLQLQLLSPARRPLQVTQDLATFWRNVYPEVKKEMKGRYPKHPWPDNPLTAVATHLTRKRAE 413          
BLAST of mRNA_M-pyrifera_M_contig93983.21688.1 vs. uniprot
Match: A0A3C1KKG2_9GAMM (ATP-dependent helicase HrpB n=9 Tax=Halieaceae TaxID=1706372 RepID=A0A3C1KKG2_9GAMM)

HSP 1 Score: 484 bits (1246), Expect = 4.150e-164
Identity = 237/248 (95.56%), Postives = 242/248 (97.58%), Query Frame = 1
Query:    1 VGVVARVEWEDRQERFVAERRRQVGQLLPPRETLAVVPAGARDDALRALLHRRGLQLLPWTPWLGQWRARVRLLRHLQPARPDAPWPALDDASLLATIDDWLLPHLGGVTRLADFGRVDLRSILAGLLPWPLPRELQRLAPERIEVPSGNNISIDYTGDTPVLAVKLQEMFGCEDTPRIAGGLQPLQLQLLSPARRPLQVTQDLATFWRNVYPEVKKEMKGRYPKHPWPDNPLTAVATHLTRKRAESG 744
            V VV RVEW+DRQERFVAERRRQVGQLL  RETLAVVPAGARD+ALRALLHRRGLQ+LPWTPWL QWRARVRLLRHLQPARPDAPWPALDDASLLATIDDWLLPHLGGVTRLADFGRVDLRSILAGLLPWPLPREL+RLAPERI+VPSGNNISIDYTGDTPVLAVKLQEMFGCEDTP IAGGLQPLQLQLLSPARRPLQVTQDLATFWRNVYPEVKKEMKGRYPKHPWPDNPLTAVATHLTRKRAESG
Sbjct:  606 VRVVERVEWDDRQERFVAERRRQVGQLLLQRETLAVVPAGARDEALRALLHRRGLQVLPWTPWLEQWRARVRLLRHLQPARPDAPWPALDDASLLATIDDWLLPHLGGVTRLADFGRVDLRSILAGLLPWPLPRELERLAPERIKVPSGNNISIDYTGDTPVLAVKLQEMFGCEDTPCIAGGLQPLQLQLLSPARRPLQVTQDLATFWRNVYPEVKKEMKGRYPKHPWPDNPLTAVATHLTRKRAESG 853          
BLAST of mRNA_M-pyrifera_M_contig93983.21688.1 vs. uniprot
Match: A0A2E7C5L2_9GAMM (ATP-dependent helicase HrpB n=1 Tax=Haliea sp. TaxID=1932666 RepID=A0A2E7C5L2_9GAMM)

HSP 1 Score: 387 bits (994), Expect = 2.290e-126
Identity = 183/247 (74.09%), Postives = 212/247 (85.83%), Query Frame = 1
Query:    4 GVVARVEWEDRQERFVAERRRQVGQLLPPRETLAVVPAGARDDALRALLHRRGLQLLPWTPWLGQWRARVRLLRHLQPARPDAPWPALDDASLLATIDDWLLPHLGGVTRLADFGRVDLRSILAGLLPWPLPRELQRLAPERIEVPSGNNISIDYTGDTPVLAVKLQEMFGCEDTPRIAGGLQPLQLQLLSPARRPLQVTQDLATFWRNVYPEVKKEMKGRYPKHPWPDNPLTAVATHLTRKRAESG 744
            G + R EW++ ++RFVAERRRQVG+LL  R+ L+ VP GAR+ AL  LL RRGL +LPWTPWL QWRAR++LLR LQP  PDA WPALDD +LLAT+++WLLPHLG + R +DF R+DL SIL+ LLPWPLPREL+RLAPE+IEVPSG+ + IDY+GDTPVLAVKLQEMFGCE+TPRIA GLQPLQL LLSPARRPLQVTQDLATFWRNVYP+VKKEMKGRYPKHPWPD+PL+AVAT LTR R   G
Sbjct:  606 GELDRAEWDEGRDRFVAERRRQVGRLLLSRQPLSSVPPGARNQALLTLLRRRGLGMLPWTPWLQQWRARIKLLRRLQPHGPDASWPALDDVALLATLEEWLLPHLGSIARASDFARLDLHSILSVLLPWPLPRELERLAPEQIEVPSGSRLRIDYSGDTPVLAVKLQEMFGCEETPRIANGLQPLQLHLLSPARRPLQVTQDLATFWRNVYPDVKKEMKGRYPKHPWPDDPLSAVATRLTRNRMPGG 852          
BLAST of mRNA_M-pyrifera_M_contig93983.21688.1 vs. uniprot
Match: A0A2N5Y4V2_9GAMM (ATP-dependent helicase HrpB n=1 Tax=Kineobactrum sediminis TaxID=1905677 RepID=A0A2N5Y4V2_9GAMM)

HSP 1 Score: 322 bits (826), Expect = 1.910e-101
Identity = 158/239 (66.11%), Postives = 187/239 (78.24%), Query Frame = 1
Query:   16 RVEWEDRQERFVAERRRQVGQLLPPRETLAVVPAGARDDALRALLHRRGLQLLPWTPWLGQWRARVRLLRHLQPARPDAPWPALDDASLLATIDDWLLPHLGGVTRLADFGRVDLRSILAGLLPWPLPRELQRLAPERIEVPSGNNISIDYTGDTPVLAVKLQEMFGCEDTPRIAGGLQPLQLQLLSPARRPLQVTQDLATFWRNVYPEVKKEMKGRYPKHPWPDNPLTAVATHLTRKR 732
            R EW+D  ++FVA+ R+QVG+L    +TL  +P  A   AL +LL RRGLQLLPWTP L QWRARV LLR L P     PWP L DA+LLA+++ WLLP LG V +L DF RVDLR +L  LLPWPLP +L++LAPER+ VPSG++++IDY  DTPVLAVKLQEMFGC DTPRIA G Q LQL LLSPA+RPLQVTQDLATFWRNVYPEVKKEM+GRYPKHPWPD+PL A+ T   ++R
Sbjct:  610 RAEWDDSADQFVAQSRQQVGRLTLASQTLQQLPEEALAAALGSLLRRRGLQLLPWTPALEQWRARVALLRRLDPDNTARPWPDLGDAALLASLEQWLLPWLGQVRKLQDFARVDLRQLLLNLLPWPLPLDLEQLAPERLVVPSGSSVAIDYLPDTPVLAVKLQEMFGCADTPRIANGRQLLQLHLLSPAQRPLQVTQDLATFWRNVYPEVKKEMRGRYPKHPWPDDPLKALPTRHVKRR 848          
BLAST of mRNA_M-pyrifera_M_contig93983.21688.1 vs. uniprot
Match: A0A3L7E3Q0_9GAMM (ATP-dependent helicase HrpB n=1 Tax=Seongchinamella sediminis TaxID=2283635 RepID=A0A3L7E3Q0_9GAMM)

HSP 1 Score: 303 bits (776), Expect = 4.520e-94
Identity = 150/240 (62.50%), Postives = 183/240 (76.25%), Query Frame = 1
Query:   19 VEWEDRQERFVAERRRQVGQLLPPRETLAVVPAGARDDALRALLHRRGLQLLPWTPWLGQWRARVRLLRHLQPARPDAPWPALDDASLLATIDDWLLPHLGGVTRLADFGRVDLRSILAGLLPWPLPRELQRLAPERIEVPSGNNISIDYTGDTPVLAVKLQEMFGCEDTPRIAGGLQPLQLQLLSPARRPLQVTQDLATFWRNVYPEVKKEMKGRYPKHPWPDNPLTAVATHLTRKRAE 738
            V+W++R ERFVA+RR   GQL    E L+ VP  +R  AL  ++ RRGL +LPWT  L QWR RVRLL     + P  PWP L +A+LL +++ WLLP+LG V RL DF ++DL++IL  LLPWPLP EL+RLAPERI VPSG+++++DY+   PVLAVKLQEMFGCEDTP IAGG   LQ+ LLSPA+RPLQVTQDLA FWR+ Y +VKKEMKGRYPKHPWPD+PL AVAT  T+KR E
Sbjct:  613 VDWDNRLERFVAQRRTLCGQLQVAVEPLSEVPEESRSQALLGVVRRRGLAILPWTRSLQQWRDRVRLLHEACSSDPQNPWPDLAEAALLDSMEQWLLPYLGPVNRLEDFQKLDLKAILHALLPWPLPLELERLAPERISVPSGSSVAVDYSQRPPVLAVKLQEMFGCEDTPTIAGGRVALQVHLLSPAQRPLQVTQDLAGFWRSSYQDVKKEMKGRYPKHPWPDDPLQAVATRHTKKRLE 852          
BLAST of mRNA_M-pyrifera_M_contig93983.21688.1 vs. uniprot
Match: A0A5B0WPP7_9GAMM (ATP-dependent helicase HrpB n=1 Tax=Pseudohalioglobus sp. NY5 TaxID=2606449 RepID=A0A5B0WPP7_9GAMM)

HSP 1 Score: 300 bits (768), Expect = 6.860e-93
Identity = 148/242 (61.16%), Postives = 181/242 (74.79%), Query Frame = 1
Query:   16 RVEWEDRQERFVAERRRQVGQLLPPRETLAVVPAGARDDALRALLHRRGLQLLPWTPWLGQWRARVRLLRHLQPARPDAPWPALDDASLLATIDDWLLPHLGGVTRLADFGRVDLRSILAGLLPWPLPRELQRLAPERIEVPSGNNISIDYTGDTPVLAVKLQEMFGCEDTPRIAGGLQPLQLQLLSPARRPLQVTQDLATFWRNVYPEVKKEMKGRYPKHPWPDNPLTAVATHLTRKRAES 741
            RVEW+ R ERFVA+RRR  G L    E +  V   ARD+AL  ++ R+GL +LPW+  L QWR RV+LL  +     + PWP L D +LLAT++ WLLP+L  V+RL DF R+DL+ IL   L WPLP EL+RLAPERI VPSG+NI +DYT D PVLAVKLQEMFGCE+TP IAGG   LQ+ LLSPA+RPLQVTQDL+ FWR+ Y EVK+EMKGRYPKHPWPD+P+ A AT  T++RA+S
Sbjct:  612 RVEWDSRSERFVAQRRRLTGALEISAEPITTVSDDARDNALLGVIRRKGLDILPWSEPLRQWRNRVQLLHRVNRDAAENPWPDLSDEALLATLETWLLPYLAPVSRLEDFKRLDLKQILHAQLGWPLPLELERLAPERISVPSGSNIPVDYTQDPPVLAVKLQEMFGCEETPTIAGGKIALQVHLLSPAQRPLQVTQDLSGFWRSSYQEVKREMKGRYPKHPWPDDPIAAKATAHTKRRAQS 853          
BLAST of mRNA_M-pyrifera_M_contig93983.21688.1 vs. uniprot
Match: A0A2N5WYR7_9GAMM (ATP-dependent helicase HrpB n=1 Tax=Pseudohalioglobus lutimaris TaxID=1737061 RepID=A0A2N5WYR7_9GAMM)

HSP 1 Score: 298 bits (762), Expect = 5.800e-92
Identity = 148/240 (61.67%), Postives = 176/240 (73.33%), Query Frame = 1
Query:   16 RVEWEDRQERFVAERRRQVGQLLPPRETLAVVPAGARDDALRALLHRRGLQLLPWTPWLGQWRARVRLLRHLQPARPDAPWPALDDASLLATIDDWLLPHLGGVTRLADFGRVDLRSILAGLLPWPLPRELQRLAPERIEVPSGNNISIDYTGDTPVLAVKLQEMFGCEDTPRIAGGLQPLQLQLLSPARRPLQVTQDLATFWRNVYPEVKKEMKGRYPKHPWPDNPLTAVATHLTRKRA 735
            RVEW+ R ERF A+RRR VG +    E L  +   AR  AL  ++ R+GL +LPWT  L QWR+RV+LL  +     D PWP L D  LL +++DWLLP+LG V RL DF ++DL+ IL   L WPLP EL+RLAPER+ VPSG+NI +DY  D PVLAVKLQEMFGCE TP +AGG  PLQ+ LLSPA+RPLQVTQDLA FWR+ Y EVKKEMKGRYPKHPWPD+PL A AT  TR+RA
Sbjct:  613 RVEWDVRLERFTAQRRRLVGMIEIGSEPLTEISEEARGIALLGVVRRKGLDMLPWTDSLRQWRSRVQLLHRINLGEIDNPWPDLGDDHLLDSLEDWLLPYLGDVNRLDDFRKLDLKKILHAKLAWPLPLELERLAPERLSVPSGSNIVVDYAQDPPVLAVKLQEMFGCEQTPTVAGGQVPLQVHLLSPAQRPLQVTQDLAGFWRSSYQEVKKEMKGRYPKHPWPDDPLVATATAHTRRRA 852          
BLAST of mRNA_M-pyrifera_M_contig93983.21688.1 vs. uniprot
Match: A0A0N8SUP3_PSESX (ATP-dependent helicase HrpB n=4 Tax=Pseudomonas syringae group TaxID=136849 RepID=A0A0N8SUP3_PSESX)

HSP 1 Score: 280 bits (715), Expect = 6.990e-92
Identity = 138/241 (57.26%), Postives = 181/241 (75.10%), Query Frame = 1
Query:   13 ARVEWEDRQERFVAERRRQVGQLLPPRETLAVVPAGARDDALRALLHRRGLQLLPWTPWLGQWRARVRLLRHLQPARPDAP-WPALDDASLLATIDDWLLPHLGGVTRLADFGRVDLRSILAGLLPWPLPRELQRLAPERIEVPSGNNISIDYTGDTPVLAVKLQEMFGCEDTPRIAGGLQPLQLQLLSPARRPLQVTQDLATFWRNVYPEVKKEMKGRYPKHPWPDNPLTAVATHLTRKR 732
            A+++W++R+  F AER+R+VG+L+  RE L  +    R  AL AL+ R+GL+LLPWT  L QW+ARV LLR L   +  A  WP L DA LLAT+++WL+P+LG VTRL+ F ++DL SIL  LLPWPLP++L+  AP+ ++VPSG+NI IDY+   P+L+V+LQE+FG  DTPRIA G Q L+L LLSPARRP+QVTQDLA FWR+ Y EVKK++KGRYPKH WPD+PL A AT   + R
Sbjct:    7 AQIDWDEREGVFRAERQRKVGELIISREPLTGLDDATRSHALLALVRRKGLELLPWTAELRQWQARVALLRGLDIEKSSASEWPDLSDAQLLATLENWLMPYLGKVTRLSHFSQLDLSSILRNLLPWPLPQQLEAQAPQTLQVPSGSNIRIDYSEHPPILSVRLQELFGLSDTPRIANGRQVLKLHLLSPARRPVQVTQDLANFWRSTYIEVKKDLKGRYPKHYWPDDPLVAEATARVKPR 247          
BLAST of mRNA_M-pyrifera_M_contig93983.21688.1 vs. uniprot
Match: UPI0019D33D1B (ATP-dependent helicase HrpB n=1 Tax=Parahaliea mediterranea TaxID=651086 RepID=UPI0019D33D1B)

HSP 1 Score: 297 bits (760), Expect = 1.100e-91
Identity = 149/240 (62.08%), Postives = 176/240 (73.33%), Query Frame = 1
Query:   16 RVEWEDRQERFVAERRRQVGQLLPPRETLAVVPAGARDDALRALLHRRGLQLLPWTPWLGQWRARVRLLRHLQPARPDA-PWPALDDASLLATIDDWLLPHLGGVTRLADFGRVDLRSILAGLLPWPLPRELQRLAPERIEVPSGNNISIDYTGDTPVLAVKLQEMFGCEDTPRIAGGLQPLQLQLLSPARRPLQVTQDLATFWRNVYPEVKKEMKGRYPKHPWPDNPLTAVATHLTRKR 732
            +V W+D +ERFVAERRR VG+++   E LA VPA AR DAL  ++ +RGL +LPW   L QWRARV LL      R +  PWP L D  LL ++ DWLLP L GV RL DF R+DLR+ L  LLPWPLP EL+R APERI VPSG+N+S+DYT   PVLAVKLQEMFGCED PR+  G   L + LLSPA RPLQVTQDLA+FWRN YPEV+KEM+GRYPKHPWP++P+ A  T  TR R
Sbjct:  613 KVVWDDVKERFVAERRRCVGRIVVGSEALAEVPAAARADALLGVVRQRGLDILPWNNALRQWRARVNLLHQQAAERGNGNPWPDLSDEGLLGSLRDWLLPWLDGVERLQDFARLDLRAALQALLPWPLPLELERQAPERIAVPSGSNVSVDYTVSPPVLAVKLQEMFGCEDGPRVCDGGLALSIHLLSPAGRPLQVTQDLASFWRNGYPEVRKEMRGRYPKHPWPEDPVGATPTRHTRAR 852          
BLAST of mRNA_M-pyrifera_M_contig93983.21688.1 vs. uniprot
Match: A0A6C0U6J7_9GAMM (ATP-dependent helicase HrpB n=2 Tax=Kineobactrum salinum TaxID=2708301 RepID=A0A6C0U6J7_9GAMM)

HSP 1 Score: 296 bits (759), Expect = 1.300e-91
Identity = 151/241 (62.66%), Postives = 178/241 (73.86%), Query Frame = 1
Query:   22 EWEDRQERFVAERRRQVGQLLPPRETLAVVPAGARDDALRALLHRRGLQLLPWTPWLGQWRARVRLLRHLQPA--RPDAPWPALDDASLLATIDDWLLPHLGGVTRLADFGRVDLRSILAGLLPWPLPRELQRLAPERIEVPSGNNISIDYTGDTPVLAVKLQEMFGCEDTPRIAGGLQPLQLQLLSPARRPLQVTQDLATFWRNVYPEVKKEMKGRYPKHPWPDNPLTAVATHLTRKRAE 738
            EW+ R E+F A  RR VG+L      L  VP  A   AL  LL RRGLQLLPWTP L QWRARV LLR L  A  + D+PWP L D +LL  ++ WLLP LG V +L DF R+DL+ IL  LLPWPLP +L+RLAPER+ VPSG++I IDY   TPVLAVKLQEMFGC  TP +A G Q LQLQLLSPARRPLQVTQDL++FWR+VYP+V+KEMKGRYPKHPWP++PL A+ T  T +R +
Sbjct:  607 EWDTRSEQFSARSRRLVGRLELDSVPLEPVPEEALQRALAELLRRRGLQLLPWTPELQQWRARVALLRRLDLAAGQADSPWPDLGDEALLDQLEQWLLPWLGPVRKLQDFARLDLKGILLALLPWPLPADLERLAPERLAVPSGSSIRIDYLPPTPVLAVKLQEMFGCVRTPTVAAGRQSLQLQLLSPARRPLQVTQDLSSFWRDVYPQVRKEMKGRYPKHPWPEDPLQALPTAHTNRRLQ 847          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93983.21688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A355SP63_9GAMM9.290e-16995.53HrpB_C domain-containing protein n=1 Tax=Halieacea... [more]
A0A3C1KKG2_9GAMM4.150e-16495.56ATP-dependent helicase HrpB n=9 Tax=Halieaceae Tax... [more]
A0A2E7C5L2_9GAMM2.290e-12674.09ATP-dependent helicase HrpB n=1 Tax=Haliea sp. Tax... [more]
A0A2N5Y4V2_9GAMM1.910e-10166.11ATP-dependent helicase HrpB n=1 Tax=Kineobactrum s... [more]
A0A3L7E3Q0_9GAMM4.520e-9462.50ATP-dependent helicase HrpB n=1 Tax=Seongchinamell... [more]
A0A5B0WPP7_9GAMM6.860e-9361.16ATP-dependent helicase HrpB n=1 Tax=Pseudohalioglo... [more]
A0A2N5WYR7_9GAMM5.800e-9261.67ATP-dependent helicase HrpB n=1 Tax=Pseudohalioglo... [more]
A0A0N8SUP3_PSESX6.990e-9257.26ATP-dependent helicase HrpB n=4 Tax=Pseudomonas sy... [more]
UPI0019D33D1B1.100e-9162.08ATP-dependent helicase HrpB n=1 Tax=Parahaliea med... [more]
A0A6C0U6J7_9GAMM1.300e-9162.66ATP-dependent helicase HrpB n=2 Tax=Kineobactrum s... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93983contigM-pyrifera_M_contig93983:2..745 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score491.5
Seed ortholog evalue2.3e-136
Seed eggNOG ortholog1121937.AUHJ01000001_gene502
Preferred namehrpB
KEGG koko:K03579
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATP-dependent helicase HrpB
EggNOG OGs1MUEQ@1224,1RR1B@1236,46421@72275,COG1643@1,COG1643@2
EC3.6.4.13
COG Functional cat.L
Best tax levelAlteromonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size744
Cds size744
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816852.8701882-CDS-M-pyrifera_M_contig93983:1..7451622816852.8701882-CDS-M-pyrifera_M_contig93983:1..745Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93983 2..745 -
1692278216.8280904-CDS-M-pyrifera_M_contig93983:1..7451692278216.8280904-CDS-M-pyrifera_M_contig93983:1..745Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93983 2..745 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93983.21688.1prot_M-pyrifera_M_contig93983.21688.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93983 2..745 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93983.21688.1

>prot_M-pyrifera_M_contig93983.21688.1 ID=prot_M-pyrifera_M_contig93983.21688.1|Name=mRNA_M-pyrifera_M_contig93983.21688.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=248bp
VGVVARVEWEDRQERFVAERRRQVGQLLPPRETLAVVPAGARDDALRALL
HRRGLQLLPWTPWLGQWRARVRLLRHLQPARPDAPWPALDDASLLATIDD
WLLPHLGGVTRLADFGRVDLRSILAGLLPWPLPRELQRLAPERIEVPSGN
NISIDYTGDTPVLAVKLQEMFGCEDTPRIAGGLQPLQLQLLSPARRPLQV
TQDLATFWRNVYPEVKKEMKGRYPKHPWPDNPLTAVATHLTRKRAESG
back to top

mRNA from alignment at M-pyrifera_M_contig93983:2..745-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93983.21688.1 ID=mRNA_M-pyrifera_M_contig93983.21688.1|Name=mRNA_M-pyrifera_M_contig93983.21688.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=744bp|location=Sequence derived from alignment at M-pyrifera_M_contig93983:2..745- (Macrocystis pyrifera P11B4 male)
GTAGGGGTGGTGGCACGGGTGGAATGGGAGGATCGCCAAGAGCGGTTTGT AGCTGAACGCCGGCGGCAGGTAGGCCAGTTGCTGCCGCCGCGCGAAACCC TCGCAGTGGTGCCAGCCGGTGCCCGAGACGACGCACTGCGTGCACTGCTG CACAGGCGCGGTTTGCAGCTGCTGCCGTGGACACCGTGGCTGGGGCAATG GCGAGCGCGGGTGAGGCTGTTGCGGCATCTGCAACCAGCGCGTCCGGATG CGCCGTGGCCCGCGTTGGACGATGCAAGCCTGTTGGCTACGATCGACGAT TGGTTGTTGCCCCATCTGGGTGGCGTCACACGTCTGGCCGACTTCGGCCG CGTTGATCTGCGCAGCATACTCGCCGGTCTGCTGCCCTGGCCCCTGCCGC GGGAACTGCAGCGGCTGGCACCGGAGCGCATCGAAGTGCCCTCCGGCAAC AACATCAGCATTGATTACACCGGTGACACACCCGTGCTGGCGGTGAAGCT ACAGGAGATGTTCGGCTGCGAGGACACCCCGCGTATCGCCGGCGGCTTGC AACCCCTGCAACTGCAGCTGCTGTCGCCTGCACGCCGGCCTCTGCAGGTG ACACAGGACCTGGCCACCTTCTGGCGCAATGTGTACCCCGAGGTGAAAAA GGAAATGAAGGGGCGTTATCCCAAGCACCCCTGGCCAGACAACCCGCTGA CCGCCGTTGCCACGCACCTGACCCGTAAGCGCGCGGAGAGCGGT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig93983:2..745-

>mRNA_M-pyrifera_M_contig93983.21688.1 ID=mRNA_M-pyrifera_M_contig93983.21688.1|Name=mRNA_M-pyrifera_M_contig93983.21688.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1488bp|location=Sequence derived from alignment at M-pyrifera_M_contig93983:2..745- (Macrocystis pyrifera P11B4 male)
GTAGGGGTGGTGGCACGGGTGGAATGGGAGGATCGCCAAGAGCGGTTTGT
AGCTGAACGCCGGCGGCAGGTAGGCCAGTTGCTGCCGCCGCGCGAAACCC
TCGCAGTGGTGCCAGCCGGTGCCCGAGACGACGCACTGCGTGCACTGCTG
CACAGGCGCGGTTTGCAGCTGCTGCCGTGGACACCGTGGCTGGGGCAATG
GCGAGCGCGGGTGAGGCTGTTGCGGCATCTGCAACCAGCGCGTCCGGATG
CGCCGTGGCCCGCGTTGGACGATGCAAGCCTGTTGGCTACGATCGACGAT
TGGTTGTTGCCCCATCTGGGTGGCGTCACACGTCTGGCCGACTTCGGCCG
CGTTGATCTGCGCAGCATACTCGCCGGTCTGCTGCCCTGGCCCCTGCCGC
GGGAACTGCAGCGGCTGGCACCGGAGCGCATCGAAGTGCCCTCCGGCAAC
AACATCAGCATTGATTACACCGGTGACACACCCGTGCTGGCGGTGAAGCT
ACAGGAGATGTTCGGCTGCGAGGACACCCCGCGTATCGCCGGCGGCTTGC
AACCCCTGCAACTGCAGCTGCTGTCGCCTGCACGCCGGCCTCTGCAGGTG
ACACAGGACCTGGCCACCTTCTGGCGCAATGTGTACCCCGAGGTGAAAAA
GGAAATGAAGGGGCGTTATCCCAAGCACCCCTGGCCAGACAACCCGCTGA
CCGCCGTTGCCACGCACCTGACCCGTAAGCGCGCGGAGAGCGGTGTAGGG
GTGGTGGCACGGGTGGAATGGGAGGATCGCCAAGAGCGGTTTGTAGCTGA
ACGCCGGCGGCAGGTAGGCCAGTTGCTGCCGCCGCGCGAAACCCTCGCAG
TGGTGCCAGCCGGTGCCCGAGACGACGCACTGCGTGCACTGCTGCACAGG
CGCGGTTTGCAGCTGCTGCCGTGGACACCGTGGCTGGGGCAATGGCGAGC
GCGGGTGAGGCTGTTGCGGCATCTGCAACCAGCGCGTCCGGATGCGCCGT
GGCCCGCGTTGGACGATGCAAGCCTGTTGGCTACGATCGACGATTGGTTG
TTGCCCCATCTGGGTGGCGTCACACGTCTGGCCGACTTCGGCCGCGTTGA
TCTGCGCAGCATACTCGCCGGTCTGCTGCCCTGGCCCCTGCCGCGGGAAC
TGCAGCGGCTGGCACCGGAGCGCATCGAAGTGCCCTCCGGCAACAACATC
AGCATTGATTACACCGGTGACACACCCGTGCTGGCGGTGAAGCTACAGGA
GATGTTCGGCTGCGAGGACACCCCGCGTATCGCCGGCGGCTTGCAACCCC
TGCAACTGCAGCTGCTGTCGCCTGCACGCCGGCCTCTGCAGGTGACACAG
GACCTGGCCACCTTCTGGCGCAATGTGTACCCCGAGGTGAAAAAGGAAAT
GAAGGGGCGTTATCCCAAGCACCCCTGGCCAGACAACCCGCTGACCGCCG
TTGCCACGCACCTGACCCGTAAGCGCGCGGAGAGCGGT
back to top