mRNA_M-pyrifera_M_contig93932.21683.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93932.21683.1
Unique NamemRNA_M-pyrifera_M_contig93932.21683.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig93932.21683.1 vs. uniprot
Match: A0A5A8ECF7_CAFRO (Uncharacterized protein n=5 Tax=Sar TaxID=2698737 RepID=A0A5A8ECF7_CAFRO)

HSP 1 Score: 92.8 bits (229), Expect = 3.810e-20
Identity = 45/84 (53.57%), Postives = 57/84 (67.86%), Query Frame = 1 
Query:    1 LSQGAVGPGDAPGQQNVTRLRRSCRNDGTLLHASAPATAIDATFTQRAFGTGGPQGELWSTYTLLSSYLFPTILGAWLDVPFEV 252
            LS G VGP D  G ++   + R+C  +G +L  S PATAIDATF QRAFG+GGPQGELW++Y+ +S   F  +L A LD PF V
Sbjct:  549 LSTGPVGPSDLIGMEDADAILRTCTANGVILKPSVPATAIDATFAQRAFGSGGPQGELWTSYSDVSGQRFHQVLCASLDAPFAV 632
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BLAST of mRNA_M-pyrifera_M_contig93932.21683.1 vs. uniprot
Match: UPI0003F05905 (uncharacterized protein LOC102804514 n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F05905)

HSP 1 Score: 83.6 bits (205), Expect = 6.690e-17
Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 1 
Query:    1 LSQGAVGPGDAPGQQNVTRLRRSCRNDGTLLHASAPATAIDATFTQRAFGTGGPQGELWSTYTLLSSYLFPTILGAWLDV 240
            LS G VGPGD  G  N + + RSC +DG LL  S PATAID    + A G+GGP GE+WSTY+ +++Y F T+L  W++V
Sbjct:  528 LSSGPVGPGDKIGYMNKSLIMRSCNSDGLLLKPSKPATAIDPQIYRSALGSGGPDGEVWSTYSDIAAYRFGTLL--WVNV 605
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BLAST of mRNA_M-pyrifera_M_contig93932.21683.1 vs. uniprot
Match: V4AYT2_LOTGI (Uncharacterized protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4AYT2_LOTGI)

HSP 1 Score: 79.3 bits (194), Expect = 2.070e-15
Identity = 38/76 (50.00%), Postives = 46/76 (60.53%), Query Frame = 1 
Query:    1 LSQGAVGPGDAPGQQNVTRLRRSCRNDGTLLHASAPATAIDATFTQRAFGTGGPQGELWSTYTLLSSYLFPTILGA 228
            LS G VGP D  G  NVT + + C  DG +L  S PATAID    Q A G+GGP+GE+WSTY+ +    F  IL A
Sbjct:  604 LSTGPVGPSDRIGYSNVTLIMKCCNTDGLILKPSKPATAIDDQIIQSALGSGGPEGEVWSTYSKIGEIYFGIILAA 679
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BLAST of mRNA_M-pyrifera_M_contig93932.21683.1 vs. uniprot
Match: V4AV64_LOTGI (Uncharacterized protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4AV64_LOTGI)

HSP 1 Score: 79.3 bits (194), Expect = 2.110e-15
Identity = 38/76 (50.00%), Postives = 46/76 (60.53%), Query Frame = 1 
Query:    1 LSQGAVGPGDAPGQQNVTRLRRSCRNDGTLLHASAPATAIDATFTQRAFGTGGPQGELWSTYTLLSSYLFPTILGA 228
            LS G VGP D  G  NVT + + C  DG +L  S PATAID    Q A G+GGP+GE+WSTY+ +    F  IL A
Sbjct:  546 LSTGPVGPSDRIGYSNVTLIMKCCNTDGLILKPSKPATAIDDQIIQSALGSGGPEGEVWSTYSKIGEIYFGIILAA 621
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BLAST of mRNA_M-pyrifera_M_contig93932.21683.1 vs. uniprot
Match: V4CAF4_LOTGI (Uncharacterized protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4CAF4_LOTGI)

HSP 1 Score: 68.2 bits (165), Expect = 1.740e-11
Identity = 40/90 (44.44%), Postives = 49/90 (54.44%), Query Frame = 1 
Query:    1 LSQGAVGPGDAPGQQNVTRLRRSCRNDGTLLHASAPATAIDATFTQRAFGTG-GPQGELWSTYTLLSSYLFPT-----ILGAWLDVPFEV 252
            LS+G VG GD  G  N T L + C  DG +L A  PA AIDA   Q AF  G GP GE+WST+T +SS  F       +  A    PF++
Sbjct:  540 LSRGPVGNGDGLGMVNKTVLSKCCGKDGRILRAQHPAKAIDAQIMQTAFQDGSGPDGEVWSTFTQISSVGFENAKYGVVFAAGQTKPFDI 629
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93932.21683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A5A8ECF7_CAFRO3.810e-2053.57Uncharacterized protein n=5 Tax=Sar TaxID=2698737 ... [more]
UPI0003F059056.690e-1751.25uncharacterized protein LOC102804514 n=1 Tax=Sacco... [more]
V4AYT2_LOTGI2.070e-1550.00Uncharacterized protein n=1 Tax=Lottia gigantea Ta... [more]
V4AV64_LOTGI2.110e-1550.00Uncharacterized protein n=1 Tax=Lottia gigantea Ta... [more]
V4CAF4_LOTGI1.740e-1144.44Uncharacterized protein n=1 Tax=Lottia gigantea Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93932contigM-pyrifera_M_contig93932:497..748 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score84.0
Seed ortholog evalue3.8e-14
Seed eggNOG ortholog10224.XP_006815625.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMQK@1,2QRFD@2759,39S3T@33154,3BEGX@33208,3D0PN@33213
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816852.605193-CDS-M-pyrifera_M_contig93932:496..7481622816852.605193-CDS-M-pyrifera_M_contig93932:496..748Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93932 497..748 -
1692278216.6669927-CDS-M-pyrifera_M_contig93932:496..7481692278216.6669927-CDS-M-pyrifera_M_contig93932:496..748Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93932 497..748 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93932.21683.1prot_M-pyrifera_M_contig93932.21683.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93932 497..748 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93932.21683.1

>prot_M-pyrifera_M_contig93932.21683.1 ID=prot_M-pyrifera_M_contig93932.21683.1|Name=mRNA_M-pyrifera_M_contig93932.21683.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp
LSQGAVGPGDAPGQQNVTRLRRSCRNDGTLLHASAPATAIDATFTQRAFG
TGGPQGELWSTYTLLSSYLFPTILGAWLDVPFEV
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mRNA from alignment at M-pyrifera_M_contig93932:497..748-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93932.21683.1 ID=mRNA_M-pyrifera_M_contig93932.21683.1|Name=mRNA_M-pyrifera_M_contig93932.21683.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig93932:497..748- (Macrocystis pyrifera P11B4 male)
TTGTCGCAAGGTGCGGTGGGACCAGGAGATGCACCAGGACAGCAAAATGT
GACACGTTTGCGCCGCTCGTGTCGCAATGATGGCACCCTTCTTCATGCCT
CTGCACCTGCGACCGCGATTGACGCAACTTTTACCCAACGTGCATTTGGA
ACTGGAGGTCCTCAAGGTGAGCTGTGGTCCACCTACACTCTCCTTTCCTC
CTACCTCTTTCCAACCATTCTTGGAGCGTGGCTCGACGTTCCATTCGAAG
TC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93932:497..748-

>mRNA_M-pyrifera_M_contig93932.21683.1 ID=mRNA_M-pyrifera_M_contig93932.21683.1|Name=mRNA_M-pyrifera_M_contig93932.21683.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig93932:497..748- (Macrocystis pyrifera P11B4 male)
TTGTCGCAAGGTGCGGTGGGACCAGGAGATGCACCAGGACAGCAAAATGT
GACACGTTTGCGCCGCTCGTGTCGCAATGATGGCACCCTTCTTCATGCCT
CTGCACCTGCGACCGCGATTGACGCAACTTTTACCCAACGTGCATTTGGA
ACTGGAGGTCCTCAAGGTGAGCTGTGGTCCACCTACACTCTCCTTTCCTC
CTACCTCTTTCCAACCATTCTTGGAGCGTGGCTCGACGTTCCATTCGAAG
TCTTGTCGCAAGGTGCGGTGGGACCAGGAGATGCACCAGGACAGCAAAAT
GTGACACGTTTGCGCCGCTCGTGTCGCAATGATGGCACCCTTCTTCATGC
CTCTGCACCTGCGACCGCGATTGACGCAACTTTTACCCAACGTGCATTTG
GAACTGGAGGTCCTCAAGGTGAGCTGTGGTCCACCTACACTCTCCTTTCC
TCCTACCTCTTTCCAACCATTCTTGGAGCGTGGCTCGACGTTCCATTCGA
AGTC
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