mRNA_M-pyrifera_M_contig93914.21680.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93914.21680.1
Unique NamemRNA_M-pyrifera_M_contig93914.21680.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig93914.21680.1 vs. uniprot
Match: A0A059CP57_EUCGR (Uncharacterized protein n=5 Tax=Myrtoideae TaxID=1699513 RepID=A0A059CP57_EUCGR)

HSP 1 Score: 54.7 bits (130), Expect = 1.100e-5
Identity = 51/175 (29.14%), Postives = 84/175 (48.00%), Query Frame = 1 
Query:    1 ITAVDYFKVIFGPA-VENEITLTYMTSVAVVVAAMAVFGG--KPFGLRALM-LSYAAFLAFLVLVPAVCFLLVPEPPQTEEDFASMPVRIAYWVTLSSVLVTGIIEGSIQASLYGLGAQ--QFYTQGVQLGTAMAGSFVSVNRIVSKLLLEDETED------FYGAAAATPLSLC 489
            ITAVDYF  ++    +E   ++ YM+S  +V+  +   GG  +   LR  M + ++ F+  L++ P +      +             ++AY VT+SSV++ G+ +G I  SL G   +  + Y Q V  GTA +G  VS+ RI++K  L    +       FY   +   L LC
Sbjct:   39 ITAVDYFSYLYPDEHIERVFSVGYMSSSVLVLVVVVSLGGWSRKLSLRTRMNVGFSLFILSLMVAPII------DWTSGGGSATKRGGKVAYAVTVSSVVMCGLADGLIGGSLIGSAGKLPKQYMQAVFAGTASSGVLVSILRIITKASLPQNPQGLRTSAHFYFIVSTFILLLC 207
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93914.21680.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A059CP57_EUCGR1.100e-529.14Uncharacterized protein n=5 Tax=Myrtoideae TaxID=1... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93914contigM-pyrifera_M_contig93914:3..566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score62.0
Seed ortholog evalue3e-07
Seed eggNOG ortholog3694.POPTR_0018s13010.1
KEGG koko:K15014
KEGG TC2.A.57.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Nucleoside transporter
EggNOG OGs37N7E@33090,3GH8Z@35493,4JSRG@91835,KOG1479@1,KOG1479@2759
COG Functional cat.F
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons2
Model size498
Cds size498
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816852.4979026-CDS-M-pyrifera_M_contig93914:2..3441622816852.4979026-CDS-M-pyrifera_M_contig93914:2..344Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93914 3..344 +
1692278216.6073005-CDS-M-pyrifera_M_contig93914:2..3441692278216.6073005-CDS-M-pyrifera_M_contig93914:2..344Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93914 3..344 +
1622816852.510471-CDS-M-pyrifera_M_contig93914:410..5661622816852.510471-CDS-M-pyrifera_M_contig93914:410..566Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93914 411..566 +
1692278216.6179574-CDS-M-pyrifera_M_contig93914:410..5661692278216.6179574-CDS-M-pyrifera_M_contig93914:410..566Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93914 411..566 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93914.21680.1prot_M-pyrifera_M_contig93914.21680.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93914 3..566 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93914.21680.1

>prot_M-pyrifera_M_contig93914.21680.1 ID=prot_M-pyrifera_M_contig93914.21680.1|Name=mRNA_M-pyrifera_M_contig93914.21680.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=166bp
ITAVDYFKVIFGPAVENEITLTYMTSVAVVVAAMAVFGGKPFGLRALMLS
YAAFLAFLVLVPAVCFLLVPEPPQTEEDFASMPVRIAYWVTLSSVLVTGI
IEGSIQASLYGLGAQQFYTQGVQLGTAMAGSFVSVNRIVSKLLLEDETED
FYGAAAATPLSLCALS
back to top

mRNA from alignment at M-pyrifera_M_contig93914:3..566+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93914.21680.1 ID=mRNA_M-pyrifera_M_contig93914.21680.1|Name=mRNA_M-pyrifera_M_contig93914.21680.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=564bp|location=Sequence derived from alignment at M-pyrifera_M_contig93914:3..566+ (Macrocystis pyrifera P11B4 male)
ATCACTGCCGTGGACTACTTCAAGGTGATCTTCGGGCCCGCGGTGGAGAA
CGAGATCACCCTCACGTACATGACGTCGGTCGCGGTGGTGGTCGCGGCGA
TGGCGGTGTTTGGCGGCAAGCCCTTCGGCCTGCGTGCGCTGATGCTCTCC
TACGCGGCCTTTTTGGCCTTCCTGGTCCTCGTGCCTGCCGTCTGCTTCCT
CCTCGTCCCCGAGCCTCCCCAGACGGAGGAGGACTTTGCGAGCATGCCCG
TGCGCATTGCCTACTGGGTGACGCTCTCCTCCGTGCTCGTCACGGGAATC
ATCGAGGGCTCCATCCAGGCGTCGCTCTACGGCCTCGGCGCTGTCTTTGA
CGCACGCCAGGCGCGAGCTGCCGCCGCCCTCGGCCCTGGCCTGGGCGTGA
GTGGAGAGCAACAGTTCTACACCCAGGGCGTGCAGCTCGGCACCGCCATG
GCCGGCTCCTTCGTTTCCGTCAACCGCATTGTCTCCAAGCTCCTCCTCGA
GGACGAGACCGAGGACTTCTACGGTGCGGCCGCCGCCACGCCTCTCTCTC
TCTGCGCTCTTTCT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig93914:3..566+

>mRNA_M-pyrifera_M_contig93914.21680.1 ID=mRNA_M-pyrifera_M_contig93914.21680.1|Name=mRNA_M-pyrifera_M_contig93914.21680.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=996bp|location=Sequence derived from alignment at M-pyrifera_M_contig93914:3..566+ (Macrocystis pyrifera P11B4 male)
ATCACTGCCGTGGACTACTTCAAGGTGATCTTCGGGCCCGCGGTGGAGAA
CGAGATCACCCTCACGTACATGACGTCGGTCGCGGTGGTGGTCGCGGCGA
TGGCGGTGTTTGGCGGCAAGCCCTTCGGCCTGCGTGCGCTGATGCTCTCC
TACGCGGCCTTTTTGGCCTTCCTGGTCCTCGTGCCTGCCGTCTGCTTCCT
CCTCGTCCCCGAGCCTCCCCAGACGGAGGAGGACTTTGCGAGCATGCCCG
TGCGCATTGCCTACTGGGTGACGCTCTCCTCCGTGCTCGTCACGGGAATC
ATCGAGGGCTCCATCCAGGCGTCGCTCTACGGCCTCGGCGCTATCACTGC
CGTGGACTACTTCAAGGTGATCTTCGGGCCCGCGGTGGAGAACGAGATCA
CCCTCACGTACATGACGTCGGTCGCGGTGGTGGTCGCGGCGATGGCGGTG
TTTGGCGGCAAGCCCTTCGGCCTGCGTGCGCTGATGCTCTCCTACGCGGC
CTTTTTGGCCTTCCTGGTCCTCGTGCCTGCCGTCTGCTTCCTCCTCGTCC
CCGAGCCTCCCCAGACGGAGGAGGACTTTGCGAGCATGCCCGTGCGCATT
GCCTACTGGGTGACGCTCTCCTCCGTGCTCGTCACGGGAATCATCGAGGG
CTCCATCCAGGCGTCGCTCTACGGCCTCGGCGCTCAACAGTTCTACACCC
AGGGCGTGCAGCTCGGCACCGCCATGGCCGGCTCCTTCGTTTCCGTCAAC
CGCATTGTCTCCAAGCTCCTCCTCGAGGACGAGACCGAGGACTTCTACGG
TGCGGCCGCCGCCACGCCTCTCTCTCTCTGCGCTCTTTCTCAACAGTTCT
ACACCCAGGGCGTGCAGCTCGGCACCGCCATGGCCGGCTCCTTCGTTTCC
GTCAACCGCATTGTCTCCAAGCTCCTCCTCGAGGACGAGACCGAGGACTT
CTACGGTGCGGCCGCCGCCACGCCTCTCTCTCTCTGCGCTCTTTCT
back to top