mRNA_M-pyrifera_M_contig93911.21678.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93911.21678.1
Unique NamemRNA_M-pyrifera_M_contig93911.21678.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig93911.21678.1 vs. uniprot
Match: A0A1X7VVD9_AMPQE (Isochorismatase domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VVD9_AMPQE)

HSP 1 Score: 132 bits (332), Expect = 8.320e-37
Identity = 63/91 (69.23%), Postives = 75/91 (82.42%), Query Frame = 1 
Query:   34 SVVLFGIEAHVCVQQTALDLLRMGYDVHVVADGTSSQNESDRAFAFERLRQCGAFITTYESVLFQLLGDAKHPDFKLVQPIFKTPRVANGL 306
            SVVLFGIE  VCVQQT LDL+  G+DVHVVADG SS+++ DR FAFER+RQCGAF++T ESVLF+LLGD+KHP FK VQP+ KT    +GL
Sbjct:  105 SVVLFGIETQVCVQQTCLDLIERGFDVHVVADGCSSRSQVDRFFAFERMRQCGAFVSTSESVLFELLGDSKHPKFKQVQPLVKTSAPDSGL 195
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BLAST of mRNA_M-pyrifera_M_contig93911.21678.1 vs. uniprot
Match: A0A7D9J7J2_PARCT (Isochorismatase domain-containing 2-like n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9J7J2_PARCT)

HSP 1 Score: 129 bits (325), Expect = 8.760e-36
Identity = 64/91 (70.33%), Postives = 75/91 (82.42%), Query Frame = 1 
Query:   34 SVVLFGIEAHVCVQQTALDLLRMGYDVHVVADGTSSQNESDRAFAFERLRQCGAFITTYESVLFQLLGDAKHPDFKLVQPIFKTPRVANGL 306
            S+VLFGIEAHVCVQQTALDLL   YDVH+VADG S+++ +DR F+FERLRQ GAFITT ESVLF LLG+AKHP+FK VQ + KT    +GL
Sbjct:  102 SIVLFGIEAHVCVQQTALDLLERNYDVHIVADGVSARSMTDRMFSFERLRQSGAFITTSESVLFGLLGNAKHPNFKEVQALVKTSSPDSGL 192
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BLAST of mRNA_M-pyrifera_M_contig93911.21678.1 vs. uniprot
Match: UPI001F04F456 (isochorismatase domain-containing protein 2-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04F456)

HSP 1 Score: 129 bits (325), Expect = 9.260e-36
Identity = 64/101 (63.37%), Postives = 78/101 (77.23%), Query Frame = 1 
Query:    4 KVTDDSAEGPSVVLFGIEAHVCVQQTALDLLRMGYDVHVVADGTSSQNESDRAFAFERLRQCGAFITTYESVLFQLLGDAKHPDFKLVQPIFKTPRVANGL 306
            K   + ++  SVVLFGIEAHVCVQQTALDLL   YDVH+VADG S+++ +DR F+FERLR  GAF+TT ESV+F LLGDAKHP+FK VQ + KT    +GL
Sbjct:   94 KKLQELSDVKSVVLFGIEAHVCVQQTALDLLERNYDVHIVADGVSARSMTDRLFSFERLRDSGAFVTTSESVMFALLGDAKHPNFKEVQKLVKTSAPDSGL 194
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BLAST of mRNA_M-pyrifera_M_contig93911.21678.1 vs. uniprot
Match: UPI00106A63E1 (isochorismatase domain-containing protein 1-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106A63E1)

HSP 1 Score: 124 bits (312), Expect = 8.080e-34
Identity = 60/91 (65.93%), Postives = 72/91 (79.12%), Query Frame = 1 
Query:   34 SVVLFGIEAHVCVQQTALDLLRMGYDVHVVADGTSSQNESDRAFAFERLRQCGAFITTYESVLFQLLGDAKHPDFKLVQPIFKTPRVANGL 306
            S+VLFGIEAHVCVQQTALDLL   YDVH+VAD  S+++ +DR F+FERLRQCGAF+TT ESVLF LLG +KH  F+ VQ + KT    +GL
Sbjct:  102 SIVLFGIEAHVCVQQTALDLLERNYDVHIVADAVSARSMTDRMFSFERLRQCGAFVTTSESVLFTLLGSSKHEKFREVQALVKTSSPDSGL 192
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BLAST of mRNA_M-pyrifera_M_contig93911.21678.1 vs. uniprot
Match: UPI001455BF9B (isochorismatase domain-containing protein 1-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455BF9B)

HSP 1 Score: 123 bits (309), Expect = 2.420e-33
Identity = 62/91 (68.13%), Postives = 72/91 (79.12%), Query Frame = 1 
Query:   34 SVVLFGIEAHVCVQQTALDLLRMGYDVHVVADGTSSQNESDRAFAFERLRQCGAFITTYESVLFQLLGDAKHPDFKLVQPIFKTPRVANGL 306
            +VVLFGIEAHVCVQQTALDLL  G DVHVVAD  SS++  DR FA++RLRQ GA ITT E+V+FQLLGD+KHP FK VQ + KT    +GL
Sbjct:  104 AVVLFGIEAHVCVQQTALDLLAKGLDVHVVADACSSRSMMDRQFAYKRLRQAGAIITTSEAVIFQLLGDSKHPKFKEVQALVKTVAPVSGL 194
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BLAST of mRNA_M-pyrifera_M_contig93911.21678.1 vs. uniprot
Match: A0A7M7ST34_STRPU (Isochorismatase domain-containing protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7ST34_STRPU)

HSP 1 Score: 123 bits (309), Expect = 2.490e-33
Identity = 61/102 (59.80%), Postives = 74/102 (72.55%), Query Frame = 1 
Query:    1 AKVTDDSAEGPSVVLFGIEAHVCVQQTALDLLRMGYDVHVVADGTSSQNESDRAFAFERLRQCGAFITTYESVLFQLLGDAKHPDFKLVQPIFKTPRVANGL 306
            A++T +     S++L GIEAHVC+QQT LDLL  GY+VHVVAD  SS++  DR FA+ERLRQ GA ITT ESVLFQLLGD  HP FK +Q + KT    +GL
Sbjct:   94 AQLTQNLTNVKSIILLGIEAHVCIQQTTLDLLARGYEVHVVADAVSSRSMMDRQFAYERLRQFGAIITTSESVLFQLLGDKDHPKFKQIQGLVKTSAPVSGL 195
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BLAST of mRNA_M-pyrifera_M_contig93911.21678.1 vs. uniprot
Match: A0A8B7ZWF3_ACAPL (isochorismatase domain-containing protein 1-like isoform X3 n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7ZWF3_ACAPL)

HSP 1 Score: 122 bits (307), Expect = 2.730e-33
Identity = 61/92 (66.30%), Postives = 71/92 (77.17%), Query Frame = 1 
Query:   34 SVVLFGIEAHVCVQQTALDLLRMGYDVHVVADGTSSQNESDRAFAFERLRQCGAFITTYESVLFQLLGDAKHPDFKLVQPIFKTPRVANGLT 309
            SVVLFGIEAHVCVQQTALDLL  G DVHVVAD  SS++  DR FA+ERLRQ G  +TT E+V+FQLLG++KHP FK VQ + K     +GLT
Sbjct:   83 SVVLFGIEAHVCVQQTALDLLAKGLDVHVVADACSSRSMMDRQFAYERLRQAGVIVTTSEAVIFQLLGESKHPKFKEVQALVKAVAPVSGLT 174
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BLAST of mRNA_M-pyrifera_M_contig93911.21678.1 vs. uniprot
Match: A0A8B8A1Z3_ACAPL (isochorismatase domain-containing protein 1-like isoform X1 n=3 Tax=Valvatida TaxID=41166 RepID=A0A8B8A1Z3_ACAPL)

HSP 1 Score: 122 bits (307), Expect = 4.980e-33
Identity = 61/92 (66.30%), Postives = 71/92 (77.17%), Query Frame = 1 
Query:   34 SVVLFGIEAHVCVQQTALDLLRMGYDVHVVADGTSSQNESDRAFAFERLRQCGAFITTYESVLFQLLGDAKHPDFKLVQPIFKTPRVANGLT 309
            SVVLFGIEAHVCVQQTALDLL  G DVHVVAD  SS++  DR FA+ERLRQ G  +TT E+V+FQLLG++KHP FK VQ + K     +GLT
Sbjct:  105 SVVLFGIEAHVCVQQTALDLLAKGLDVHVVADACSSRSMMDRQFAYERLRQAGVIVTTSEAVIFQLLGESKHPKFKEVQALVKAVAPVSGLT 196
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BLAST of mRNA_M-pyrifera_M_contig93911.21678.1 vs. uniprot
Match: A0A8J1UKV7_OWEFU (Ofus.G142140 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1UKV7_OWEFU)

HSP 1 Score: 122 bits (306), Expect = 8.280e-33
Identity = 58/90 (64.44%), Postives = 71/90 (78.89%), Query Frame = 1 
Query:   37 VVLFGIEAHVCVQQTALDLLRMGYDVHVVADGTSSQNESDRAFAFERLRQCGAFITTYESVLFQLLGDAKHPDFKLVQPIFKTPRVANGL 306
            ++LFGIEAHVCVQQTALDLL +GYDVHVVAD  SS+++ DR FAFERLRQ GA +TT E+VL QL+GD +H  FK +Q + KT    +GL
Sbjct:  112 IILFGIEAHVCVQQTALDLLSLGYDVHVVADAVSSRSQMDRQFAFERLRQAGAVVTTSEAVLLQLVGDKEHAKFKDIQSLIKTSAPVSGL 201
[Close]
BLAST of mRNA_M-pyrifera_M_contig93911.21678.1 vs. uniprot
Match: UPI001BB21210 (isochorismatase domain-containing protein 1-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB21210)

HSP 1 Score: 121 bits (304), Expect = 1.380e-32
Identity = 59/91 (64.84%), Postives = 69/91 (75.82%), Query Frame = 1 
Query:   34 SVVLFGIEAHVCVQQTALDLLRMGYDVHVVADGTSSQNESDRAFAFERLRQCGAFITTYESVLFQLLGDAKHPDFKLVQPIFKTPRVANGL 306
            S++L GIEAHVC+QQTALDLL  GYDVHVVAD  SS++  DR FA+ERLRQ GA ITT ES+LFQLLGD  HP FK +Q + K     +GL
Sbjct:  104 SIILLGIEAHVCIQQTALDLLARGYDVHVVADAVSSRSMMDRQFAYERLRQFGAIITTSESILFQLLGDKDHPKFKQIQGLVKISAPVSGL 194
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93911.21678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1X7VVD9_AMPQE8.320e-3769.23Isochorismatase domain-containing protein n=1 Tax=... [more]
A0A7D9J7J2_PARCT8.760e-3670.33Isochorismatase domain-containing 2-like n=2 Tax=P... [more]
UPI001F04F4569.260e-3663.37isochorismatase domain-containing protein 2-like n... [more]
UPI00106A63E18.080e-3465.93isochorismatase domain-containing protein 1-like n... [more]
UPI001455BF9B2.420e-3368.13isochorismatase domain-containing protein 1-like n... [more]
A0A7M7ST34_STRPU2.490e-3359.80Isochorismatase domain-containing protein n=1 Tax=... [more]
A0A8B7ZWF3_ACAPL2.730e-3366.30isochorismatase domain-containing protein 1-like i... [more]
A0A8B8A1Z3_ACAPL4.980e-3366.30isochorismatase domain-containing protein 1-like i... [more]
A0A8J1UKV7_OWEFU8.280e-3364.44Ofus.G142140 protein n=1 Tax=Owenia fusiformis Tax... [more]
UPI001BB212101.380e-3264.84isochorismatase domain-containing protein 1-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93911contigM-pyrifera_M_contig93911:243..566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score132.1
Seed ortholog evalue1.5e-28
Seed eggNOG ortholog400682.PAC_15727803
Preferred nameISOC2
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
EggNOG free text desc.Isochorismatase family
EggNOG OGs38EAH@33154,3BAPT@33208,COG1335@1,KOG4044@2759
COG Functional cat.Q
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size324
Cds size324
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816852.4166648-CDS-M-pyrifera_M_contig93911:242..5661622816852.4166648-CDS-M-pyrifera_M_contig93911:242..566Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93911 243..566 +
1692278216.5594506-CDS-M-pyrifera_M_contig93911:242..5661692278216.5594506-CDS-M-pyrifera_M_contig93911:242..566Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93911 243..566 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93911.21678.1prot_M-pyrifera_M_contig93911.21678.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93911 243..566 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93911.21678.1

>prot_M-pyrifera_M_contig93911.21678.1 ID=prot_M-pyrifera_M_contig93911.21678.1|Name=mRNA_M-pyrifera_M_contig93911.21678.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
AKVTDDSAEGPSVVLFGIEAHVCVQQTALDLLRMGYDVHVVADGTSSQNE
SDRAFAFERLRQCGAFITTYESVLFQLLGDAKHPDFKLVQPIFKTPRVAN
GLTLPKE*
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mRNA from alignment at M-pyrifera_M_contig93911:243..566+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93911.21678.1 ID=mRNA_M-pyrifera_M_contig93911.21678.1|Name=mRNA_M-pyrifera_M_contig93911.21678.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig93911:243..566+ (Macrocystis pyrifera P11B4 male)
GCAAAAGTGACCGACGACTCGGCCGAGGGGCCCTCGGTGGTCCTCTTCGG
GATCGAGGCACACGTGTGTGTCCAGCAGACTGCTTTGGACCTGCTGCGCA
TGGGGTACGACGTCCATGTCGTCGCAGACGGCACATCATCCCAGAACGAA
AGCGATAGGGCTTTCGCTTTCGAGCGACTCCGGCAGTGCGGCGCATTCAT
CACCACTTACGAGTCAGTGCTCTTTCAGCTGCTTGGTGATGCCAAGCATC
CTGACTTCAAGCTGGTCCAGCCCATTTTCAAGACTCCGAGAGTGGCCAAC
GGCCTGACGCTCCCCAAGGAGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93911:243..566+

>mRNA_M-pyrifera_M_contig93911.21678.1 ID=mRNA_M-pyrifera_M_contig93911.21678.1|Name=mRNA_M-pyrifera_M_contig93911.21678.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig93911:243..566+ (Macrocystis pyrifera P11B4 male)
GCAAAAGTGACCGACGACTCGGCCGAGGGGCCCTCGGTGGTCCTCTTCGG
GATCGAGGCACACGTGTGTGTCCAGCAGACTGCTTTGGACCTGCTGCGCA
TGGGGTACGACGTCCATGTCGTCGCAGACGGCACATCATCCCAGAACGAA
AGCGATAGGGCTTTCGCTTTCGAGCGACTCCGGCAGTGCGGCGCATTCAT
CACCACTTACGAGTCAGTGCTCTTTCAGCTGCTTGGTGATGCCAAGCATC
CTGACTTCAAGCTGGTCCAGCCCATTTTCAAGACTCCGAGAGTGGCCAAC
GGCCTGACGCTCCCCAAGGAGTAGGCAAAAGTGACCGACGACTCGGCCGA
GGGGCCCTCGGTGGTCCTCTTCGGGATCGAGGCACACGTGTGTGTCCAGC
AGACTGCTTTGGACCTGCTGCGCATGGGGTACGACGTCCATGTCGTCGCA
GACGGCACATCATCCCAGAACGAAAGCGATAGGGCTTTCGCTTTCGAGCG
ACTCCGGCAGTGCGGCGCATTCATCACCACTTACGAGTCAGTGCTCTTTC
AGCTGCTTGGTGATGCCAAGCATCCTGACTTCAAGCTGGTCCAGCCCATT
TTCAAGACTCCGAGAGTGGCCAACGGCCTGACGCTCCCCAAGGAGTAG
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