mRNA_M-pyrifera_M_contig93866.21674.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig93866.21674.1
Unique Name	mRNA_M-pyrifera_M_contig93866.21674.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

[Close]

BLAST of mRNA_M-pyrifera_M_contig93866.21674.1 vs. uniprot
Match: A0A6H5KY05_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY05_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 6.800e-38
Identity = 64/109 (58.72%), Postives = 84/109 (77.06%), Query Frame = 1

Query:    1 NEDLYAILFLLTEKPAANLVLKHEHPDGMSGNGQQALEELVQKYNKVTDEVVRAAIDKLVNTAMTHNQDPDDFFMKKYLARTELARMGEPITDQRFKDICVQGFTSDYK 327
            NEDLYAILFLL E PAA  + KHE   G+SG+GQ A EEL   Y++VTDEV+RA +++L N  M   ++PDD+F +K+L RT+L +MGE I+D+RFKDICVQGF+ +YK
Sbjct:   38 NEDLYAILFLLVELPAALSIQKHEDDTGISGDGQAAFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEHISDRRFKDICVQGFSDEYK 146

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BLAST of mRNA_M-pyrifera_M_contig93866.21674.1 vs. uniprot
Match: A0A6H5KDC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDC9_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 1.360e-37
Identity = 64/109 (58.72%), Postives = 85/109 (77.98%), Query Frame = 1

Query:    1 NEDLYAILFLLTEKPAANLVLKHEHPDGMSGNGQQALEELVQKYNKVTDEVVRAAIDKLVNTAMTHNQDPDDFFMKKYLARTELARMGEPITDQRFKDICVQGFTSDYK 327
            NEDLYAILFLL E PAA  + KHE+  G+SG+GQ A EEL   Y++VTDEV+RA +++L N  M   ++PDD+F +K+L RT+L +MGEPI+D+RFKDI VQGF+ +YK
Sbjct:   40 NEDLYAILFLLVELPAALSIQKHENDTGISGDGQAAFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDIRVQGFSDEYK 148

[Close]

BLAST of mRNA_M-pyrifera_M_contig93866.21674.1 vs. uniprot
Match: A0A6H5KVX0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX0_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 7.850e-37
Identity = 63/109 (57.80%), Postives = 84/109 (77.06%), Query Frame = 1

Query:    1 NEDLYAILFLLTEKPAANLVLKHEHPDGMSGNGQQALEELVQKYNKVTDEVVRAAIDKLVNTAMTHNQDPDDFFMKKYLARTELARMGEPITDQRFKDICVQGFTSDYK 327
            NEDLYAIL+LL E PAA  + KHE   G+SG+GQ A EEL   Y++VTDEV+RA +++L N  M   ++PDD+F +KYL RT+L +MGE I+D+RFKDICV+GF+ +YK
Sbjct:   83 NEDLYAILYLLVELPAALSIQKHEDDTGISGDGQAAFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKYLLRTQLDKMGEAISDRRFKDICVRGFSDEYK 191

[Close]

BLAST of mRNA_M-pyrifera_M_contig93866.21674.1 vs. uniprot
Match: A0A6H5JXA1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXA1_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 1.160e-36
Identity = 66/109 (60.55%), Postives = 80/109 (73.39%), Query Frame = 1

Query:    1 NEDLYAILFLLTEKPAANLVLKHEHPDGMSGNGQQALEELVQKYNKVTDEVVRAAIDKLVNTAMTHNQDPDDFFMKKYLARTELARMGEPITDQRFKDICVQGFTSDYK 327
            NEDLYAILF L E PAA  V KHE   G+SG+GQ A  EL   YN+VTDEV+RA +D L  T M   ++PDDFF KK+  R++L +MGE I+D+RFKDICVQGF+ DYK
Sbjct:   81 NEDLYAILFCLVELPAALTVHKHEDDTGLSGDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYK 189

[Close]

BLAST of mRNA_M-pyrifera_M_contig93866.21674.1 vs. uniprot
Match: A0A6H5L2I7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2I7_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 4.590e-36
Identity = 61/109 (55.96%), Postives = 83/109 (76.15%), Query Frame = 1

Query:    1 NEDLYAILFLLTEKPAANLVLKHEHPDGMSGNGQQALEELVQKYNKVTDEVVRAAIDKLVNTAMTHNQDPDDFFMKKYLARTELARMGEPITDQRFKDICVQGFTSDYK 327
            NEDLYAILFLL E PAA  + KH+    + G+GQ + EEL   Y++VTDEV+RA +++L N  M   ++PDD+F +K+L RT+L +MGEPI+D+RFKDICVQGF+ +YK
Sbjct:   40 NEDLYAILFLLVELPAAVSIQKHKDDTVIRGDGQASFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYK 148

[Close]

BLAST of mRNA_M-pyrifera_M_contig93866.21674.1 vs. uniprot
Match: A0A6H5K7P0_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P0_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 7.730e-36
Identity = 66/109 (60.55%), Postives = 80/109 (73.39%), Query Frame = 1

Query:    1 NEDLYAILFLLTEKPAANLVLKHEHPDGMSGNGQQALEELVQKYNKVTDEVVRAAIDKLVNTAMTHNQDPDDFFMKKYLARTELARMGEPITDQRFKDICVQGFTSDYK 327
            NEDLYAILF L E PAA  V KHE   G+SG+GQ A  EL   YN+VTDEV+RA +D L  T M   ++PDDFF KK+  R++L +MGE I+D+RFKDICVQGF+ DYK
Sbjct:   81 NEDLYAILFCLVELPAALTVHKHEDDTGLSGDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYK 189

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BLAST of mRNA_M-pyrifera_M_contig93866.21674.1 vs. uniprot
Match: A0A6H5JF66_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF66_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 1.110e-35
Identity = 63/109 (57.80%), Postives = 84/109 (77.06%), Query Frame = 1

Query:    1 NEDLYAILFLLTEKPAANLVLKHEHPDGMSGNGQQALEELVQKYNKVTDEVVRAAIDKLVNTAMTHNQDPDDFFMKKYLARTELARMGEPITDQRFKDICVQGFTSDYK 327
            NEDLYA LFLL E PAA  + KHE   G+SG+GQ A EEL   Y++VTDEV+RA +++L N  M   ++PD++F +K+L RT+L +MGEPI+D+RFKDICVQGF+ +YK
Sbjct:   83 NEDLYASLFLLMEPPAALSIQKHEDDTGISGDGQAAFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDNYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYK 191

[Close]

BLAST of mRNA_M-pyrifera_M_contig93866.21674.1 vs. uniprot
Match: A0A6H5LFM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LFM4_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 2.410e-35
Identity = 65/109 (59.63%), Postives = 79/109 (72.48%), Query Frame = 1

Query:    1 NEDLYAILFLLTEKPAANLVLKHEHPDGMSGNGQQALEELVQKYNKVTDEVVRAAIDKLVNTAMTHNQDPDDFFMKKYLARTELARMGEPITDQRFKDICVQGFTSDYK 327
            NEDLYAILF L E PAA  V KHE   G+SG+GQ A  EL   YN+VTDEV+RA +D L  T M   ++PDDFF KK+  R++L +MGE I+D+RFKDICVQGF+ D K
Sbjct:   81 NEDLYAILFCLVELPAALTVHKHEDETGLSGDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDCK 189

[Close]

BLAST of mRNA_M-pyrifera_M_contig93866.21674.1 vs. uniprot
Match: A0A6H5L580_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L580_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 6.250e-35
Identity = 64/109 (58.72%), Postives = 84/109 (77.06%), Query Frame = 1

Query:    1 NEDLYAILFLLTEKPAANLVLKHEHPDGMSGNGQQALEELVQKYNKVTDEVVRAAIDKLVNTAMTHNQDPDDFFMKKYLARTELARMGEPITDQRFKDICVQGFTSDYK 327
            NEDLYAILFL  E PAA  + KHE   G+SG+GQ A EEL   Y++VTDEV+RA +++L N  M   ++PDD+F +K+L RT+L +MGEPI+D+RFKDICVQGF+ +YK
Sbjct:  101 NEDLYAILFLQVELPAALSIQKHEDDTGISGDGQAAFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYK 209

[Close]

BLAST of mRNA_M-pyrifera_M_contig93866.21674.1 vs. uniprot
Match: A0A6H5KN28_9PHAE (Uncharacterized protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN28_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 1.690e-34
Identity = 66/109 (60.55%), Postives = 80/109 (73.39%), Query Frame = 1

Query:    1 NEDLYAILFLLTEKPAANLVLKHEHPDGMSGNGQQALEELVQKYNKVTDEVVRAAIDKLVNTAMTHNQDPDDFFMKKYLARTELARMGEPITDQRFKDICVQGFTSDYK 327
            NEDLYAILF L E PAA  V KHE   G+SG+GQ A  EL   YN+VTDEV+RA +D L  T M   ++PDDFF KK+  R++L +MGE I+D+RFKDICVQGF+ DYK
Sbjct:   81 NEDLYAILFCLVELPAALTVHKHEDDTGLSGDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYK 189

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig93866.21674.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig93866.21674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KY05_9PHAE	6.800e-38	58.72	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KDC9_9PHAE	1.360e-37	58.72	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KVX0_9PHAE	7.850e-37	57.80	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5JXA1_9PHAE	1.160e-36	60.55	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5L2I7_9PHAE	4.590e-36	55.96	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K7P0_9PHAE	7.730e-36	60.55	CCHC-type domain-containing protein (Fragment) n=1...	[more]
A0A6H5JF66_9PHAE	1.110e-35	57.80	CCHC-type domain-containing protein n=2 Tax=Ectoca...	[more]
A0A6H5LFM4_9PHAE	2.410e-35	59.63	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L580_9PHAE	6.250e-35	58.72	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5KN28_9PHAE	1.690e-34	60.55	Uncharacterized protein (Fragment) n=3 Tax=Ectocar...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig93866	contig	M-pyrifera_M_contig93866:378..704 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	327
Cds size	327
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816852.0386055-CDS-M-pyrifera_M_contig93866:377..704	1622816852.0386055-CDS-M-pyrifera_M_contig93866:377..704	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig93866 378..704 -
1692278216.2829137-CDS-M-pyrifera_M_contig93866:377..704	1692278216.2829137-CDS-M-pyrifera_M_contig93866:377..704	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig93866 378..704 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig93866.21674.1	prot_M-pyrifera_M_contig93866.21674.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig93866 378..704 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig93866:378..704-
coding sequence from alignment at M-pyrifera_M_contig93866:378..704-

protein sequence of mRNA_M-pyrifera_M_contig93866.21674.1

>prot_M-pyrifera_M_contig93866.21674.1 ID=prot_M-pyrifera_M_contig93866.21674.1|Name=mRNA_M-pyrifera_M_contig93866.21674.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
NEDLYAILFLLTEKPAANLVLKHEHPDGMSGNGQQALEELVQKYNKVTDE
VVRAAIDKLVNTAMTHNQDPDDFFMKKYLARTELARMGEPITDQRFKDIC
VQGFTSDYK

mRNA from alignment at M-pyrifera_M_contig93866:378..704-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig93866.21674.1 ID=mRNA_M-pyrifera_M_contig93866.21674.1|Name=mRNA_M-pyrifera_M_contig93866.21674.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=327bp|location=Sequence derived from alignment at M-pyrifera_M_contig93866:378..704- (Macrocystis pyrifera P11B4 male)
AACGAGGACTTATACGCCATTCTGTTCTTGCTAACAGAGAAACCAGCAGC
TAATCTCGTACTGAAGCATGAGCACCCAGACGGGATGAGCGGCAACGGAC
AACAAGCTCTGGAGGAGCTTGTACAGAAGTACAACAAGGTTACAGATGAG
GTCGTTCGCGCAGCCATAGACAAGCTGGTCAACACCGCCATGACACACAA
CCAGGACCCCGACGATTTTTTCATGAAAAAATACCTCGCCCGCACCGAGC
TCGCCAGGATGGGAGAGCCCATCACCGACCAGAGATTCAAGGATATCTGC
GTCCAAGGCTTCACATCTGACTACAAG

Coding sequence (CDS) from alignment at M-pyrifera_M_contig93866:378..704-

>mRNA_M-pyrifera_M_contig93866.21674.1 ID=mRNA_M-pyrifera_M_contig93866.21674.1|Name=mRNA_M-pyrifera_M_contig93866.21674.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig93866:378..704- (Macrocystis pyrifera P11B4 male)
AACGAGGACTTATACGCCATTCTGTTCTTGCTAACAGAGAAACCAGCAGC
TAATCTCGTACTGAAGCATGAGCACCCAGACGGGATGAGCGGCAACGGAC
AACAAGCTCTGGAGGAGCTTGTACAGAAGTACAACAAGGTTACAGATGAG
GTCGTTCGCGCAGCCATAGACAAGCTGGTCAACACCGCCATGACACACAA
CCAGGACCCCGACGATTTTTTCATGAAAAAATACCTCGCCCGCACCGAGC
TCGCCAGGATGGGAGAGCCCATCACCGACCAGAGATTCAAGGATATCTGC
GTCCAAGGCTTCACATCTGACTACAAGAACGAGGACTTATACGCCATTCT
GTTCTTGCTAACAGAGAAACCAGCAGCTAATCTCGTACTGAAGCATGAGC
ACCCAGACGGGATGAGCGGCAACGGACAACAAGCTCTGGAGGAGCTTGTA
CAGAAGTACAACAAGGTTACAGATGAGGTCGTTCGCGCAGCCATAGACAA
GCTGGTCAACACCGCCATGACACACAACCAGGACCCCGACGATTTTTTCA
TGAAAAAATACCTCGCCCGCACCGAGCTCGCCAGGATGGGAGAGCCCATC
ACCGACCAGAGATTCAAGGATATCTGCGTCCAAGGCTTCACATCTGACTA
CAAG