mRNA_M-pyrifera_M_contig93837.21669.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93837.21669.1
Unique NamemRNA_M-pyrifera_M_contig93837.21669.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig93837.21669.1 vs. uniprot
Match: A0A7S3E5X3_9CHLO (Hypothetical protein n=1 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S3E5X3_9CHLO)

HSP 1 Score: 76.3 bits (186), Expect = 9.170e-15
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = 1
Query:  142 LEPKLKAWCYSAGDEFRSVRVLLSSLQTVLWEGHTWKPVPMATLVEPSTVKKAYRRACLITHPDR-QPTSASPERRFISDFVF 387
            L PKL+AW     D   ++R LLS+LQ VLWEG  WK V M  L+ P+ VKK YR+A +I HPD+ +    + E+ FI+D++F
Sbjct:   85 LGPKLEAWAKGKSD---NIRALLSTLQDVLWEGSRWKEVSMMDLMNPAQVKKQYRKAMIIMHPDKVKQKGGTTEQIFIADYLF 164          
BLAST of mRNA_M-pyrifera_M_contig93837.21669.1 vs. uniprot
Match: A0A0G4G5T3_VITBC (J domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4G5T3_VITBC)

HSP 1 Score: 78.6 bits (192), Expect = 1.740e-14
Identity = 43/100 (43.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:   94 REKEETA-SKKLEAKSKLEPKLKAWCYSAGDEFRSVRVLLSSLQTVLWEGHTWKPVPMATLVEPST-VKKAYRRACLITHPDRQPTSASPERRFISDFVF 387
            R+KE T   +K+EA S+L  ++  W  ++   ++ +R LLS+LQ VLWEGH WKP+ ++TL+  S  VKKAYR A ++ HPDR    AS ++++ ++ VF
Sbjct:  322 RQKEATKLQEKIEAGSELSGQMDKWAKTSDGSYKDIRSLLSTLQDVLWEGHDWKPISLSTLMMSSAEVKKAYRLALILAHPDRH-QHASADQQYRAERVF 420          
BLAST of mRNA_M-pyrifera_M_contig93837.21669.1 vs. uniprot
Match: A0A7S2X1J7_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S2X1J7_9CHLO)

HSP 1 Score: 77.4 bits (189), Expect = 4.940e-14
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 1
Query:  142 LEPKLKAWCYSAGDEFRSVRVLLSSLQTVLWEGHTWKPVPMATLVEPSTVKKAYRRACLITHPDR-QPTSASPERRFISDFVF 387
            L PKL+AW    GD   ++R LLS+LQ V+W+G  WK V M  L+ P+ VKK+YR+A +I HPD+ +    + E+ FI+D++F
Sbjct:  430 LGPKLEAWSKGKGD---NIRALLSTLQDVIWDGSNWKEVSMMDLMNPAQVKKSYRKAMIIMHPDKVKQRGGTTEQIFIADYLF 509          
BLAST of mRNA_M-pyrifera_M_contig93837.21669.1 vs. uniprot
Match: A0A061AXP7_CYBFA (CYFA0S03e03576g1_1 n=1 Tax=Cyberlindnera fabianii TaxID=36022 RepID=A0A061AXP7_CYBFA)

HSP 1 Score: 75.5 bits (184), Expect = 2.460e-13
Identity = 46/112 (41.07%), Postives = 62/112 (55.36%), Query Frame = 1
Query:   70 VGDYRAGEREKEETASKKLEAKSK------LEPKLKAWCYSAGDEFRSVRVLLSSLQTVLWEGHTWKPVPMATLVEPSTVKKAYRRACLITHPDRQPTSASPERRFISDFVF 387
            V  Y A +R K E   ++ E   K      +E KL AW     D   ++R L+SSL TVLW+G  WKPV M  LV P  VK +Y +A   THPD+ P +A+ E++ I+  VF
Sbjct:  635 VKTYEAVDRVKREHQKQEAEEAEKFKLHDVVEDKLNAWKQGKED---NLRALISSLDTVLWDGANWKPVSMGELVVPKKVKLSYMKAVAKTHPDKVPVTATSEQKMIAQGVF 743          
BLAST of mRNA_M-pyrifera_M_contig93837.21669.1 vs. uniprot
Match: A0A6P6RYF0_9EIME (auxilin-related protein 2 n=1 Tax=Cyclospora cayetanensis TaxID=88456 RepID=A0A6P6RYF0_9EIME)

HSP 1 Score: 72.8 bits (177), Expect = 2.020e-12
Identity = 35/89 (39.33%), Postives = 59/89 (66.29%), Query Frame = 1
Query:  121 KLEAKSKLEPKLKAWCYSAGDEFRSVRVLLSSLQTVLWEGHTWKPVPMATLVEPSTVKKAYRRACLITHPDRQPTSASPERRFISDFVF 387
            +L    +L+ +L  W  +A   F+ VR LLS++ +VLWEG +W+PV +++L+    +KK +RRA L+ HPD+   +A+PER + ++ VF
Sbjct:  387 RLAIPEELKQELDRWAKTADGGFKDVRTLLSTVHSVLWEGASWEPVSLSSLMLQPNLKKHFRRALLLAHPDKH-QNATPERHYRAERVF 474          
BLAST of mRNA_M-pyrifera_M_contig93837.21669.1 vs. uniprot
Match: A0A662WMD8_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WMD8_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.730e-12
Identity = 45/128 (35.16%), Postives = 69/128 (53.91%), Query Frame = 1
Query:    4 SLDTKRRIQWRRNKKKADAEGKVGDYRAGEREKEETASKKLEAKSKLEPKLKAWCYSAGDEFRSVRVLLSSLQTVLWEGHTWKPVPMATLVEPSTVKKAYRRACLITHPDRQPTSASPERRFISDFVF 387
            S D +R ++ R  + + D +    D R  E      A+ K  A + L PKLK W    G   +++R LLS++  V+WEG  W  V M  L++PS VKK YR+A ++ HPD+     + E+  I++ VF
Sbjct:  334 SDDVRRAMEERERQVQRDVDKAREDLRQREEAVRSLAAMKEGANAVLGPKLKLWAEDNG-RIKNIRTLLSTMHQVMWEGSKWTEVNMGKLLQPSDVKKHYRKAMIVVHPDKS-GGRNAEQLLIAERVF 459          
BLAST of mRNA_M-pyrifera_M_contig93837.21669.1 vs. uniprot
Match: UPI00193A756E (cyclin-G-associated kinase-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI00193A756E)

HSP 1 Score: 72.4 bits (176), Expect = 3.060e-12
Identity = 46/100 (46.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:  109 TASKKLEAKSKL------------EP-KLKAWCYSAGDEFRSVRVLLSSLQTVLWEGHTWKPVPMATLVEPSTVKKAYRRACLITHPDRQPTSASPERRF 369
            TASKK EA+ KL            +P K+K   +  G E R+VR LLS+L TVLWEG  WK   M  LV+P+ VKK YR+ACL+ HPD+   + +P   F
Sbjct: 1142 TASKKEEARRKLADLKKAARTQDMDPQKIKILDWVEGKE-RNVRALLSTLHTVLWEGTKWKQCGMHQLVQPNDVKKMYRKACLVVHPDK--ATGTPNEEF 1238          
BLAST of mRNA_M-pyrifera_M_contig93837.21669.1 vs. uniprot
Match: A0A7L1R772_9PASS (GAK kinase (Fragment) n=1 Tax=Cisticola juncidis TaxID=52622 RepID=A0A7L1R772_9PASS)

HSP 1 Score: 66.6 bits (161), Expect = 3.950e-12
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query:  190 RSVRVLLSSLQTVLWEGHT-WKPVPMATLVEPSTVKKAYRRACLITHPDR 336
            R++R LLS++ TVLW G T WKPV MA LV P  VKK YRRA L+ HPD+
Sbjct:   23 RNIRALLSTMHTVLWAGETKWKPVSMADLVTPEQVKKVYRRAVLVVHPDK 72          
BLAST of mRNA_M-pyrifera_M_contig93837.21669.1 vs. uniprot
Match: E4X4P1_OIKDI (Uncharacterized protein n=2 Tax=Oikopleura dioica TaxID=34765 RepID=E4X4P1_OIKDI)

HSP 1 Score: 72.0 bits (175), Expect = 4.020e-12
Identity = 40/97 (41.24%), Postives = 62/97 (63.92%), Query Frame = 1
Query:   46 KKADAEGKVGDYRAGEREKEETASKKLEAKSKLEPKLKAWCYSAGDEFRSVRVLLSSLQTVLWEGHTWKPVPMATLVEPSTVKKAYRRACLITHPDR 336
            K A+   K+GD       K ET +K    +  ++ K++ W  + G E  +VR L++SLQ VLWEG++WKP+ +  +++P  VKK+YRRACL+ HPD+
Sbjct:  665 KSAEKNRKMGDM------KRETENK---YRDPIDVKVETW--AKGKE-ANVRALIASLQEVLWEGNSWKPISVGEILQPVAVKKSYRRACLVVHPDK 749          
BLAST of mRNA_M-pyrifera_M_contig93837.21669.1 vs. uniprot
Match: A0A482UJF0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UJF0_9ARCH)

HSP 1 Score: 68.9 bits (167), Expect = 4.140e-12
Identity = 30/79 (37.97%), Postives = 47/79 (59.49%), Query Frame = 1
Query:  151 KLKAWCYSAGDEFRSVRVLLSSLQTVLWEGHTWKPVPMATLVEPSTVKKAYRRACLITHPDRQPTSASPERRFISDFVF 387
            +LK W   +    +++R+LLS+LQ VLW    W+PV MA L++P   K ++ +AC I HPD+Q T  + +R    +  F
Sbjct:   69 RLKEWAEESNGTKKNIRILLSTLQDVLWSDAKWEPVSMAKLIDPRRAKISFMKACTIVHPDKQNTMDNTQRYIAKEVFF 147          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93837.21669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3E5X3_9CHLO9.170e-1546.99Hypothetical protein n=1 Tax=Chloropicon laureae T... [more]
A0A0G4G5T3_VITBC1.740e-1443.00J domain-containing protein n=1 Tax=Vitrella brass... [more]
A0A7S2X1J7_9CHLO4.940e-1445.78Hypothetical protein n=1 Tax=Chloropicon roscoffen... [more]
A0A061AXP7_CYBFA2.460e-1341.07CYFA0S03e03576g1_1 n=1 Tax=Cyberlindnera fabianii ... [more]
A0A6P6RYF0_9EIME2.020e-1239.33auxilin-related protein 2 n=1 Tax=Cyclospora cayet... [more]
A0A662WMD8_9STRA2.730e-1235.16Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
UPI00193A756E3.060e-1246.00cyclin-G-associated kinase-like n=1 Tax=Styela cla... [more]
A0A7L1R772_9PASS3.950e-1262.00GAK kinase (Fragment) n=1 Tax=Cisticola juncidis T... [more]
E4X4P1_OIKDI4.020e-1241.24Uncharacterized protein n=2 Tax=Oikopleura dioica ... [more]
A0A482UJF0_9ARCH4.140e-1237.97Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93837contigM-pyrifera_M_contig93837:3..389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.8
Seed ortholog evalue4.1e-12
Seed eggNOG ortholog2880.D8LHK2
Preferred nameSWA2
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006810,GO:0006897,GO:0006898,GO:0006996,GO:0007029,GO:0008150,GO:0009987,GO:0010256,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0022411,GO:0030276,GO:0030544,GO:0031072,GO:0031593,GO:0031982,GO:0031984,GO:0032182,GO:0032781,GO:0032984,GO:0032991,GO:0042175,GO:0043085,GO:0043130,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043462,GO:0043624,GO:0043933,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0048308,GO:0048309,GO:0050790,GO:0051179,GO:0051234,GO:0051261,GO:0051336,GO:0051345,GO:0065007,GO:0065009,GO:0071840,GO:0072318,GO:0072319,GO:0098657,GO:0098827,GO:0140030
EggNOG free text desc.clathrin-coated pit assembly
EggNOG OGsKOG0431@1,KOG0431@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size387
Cds size387
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816851.8610303-CDS-M-pyrifera_M_contig93837:2..3891622816851.8610303-CDS-M-pyrifera_M_contig93837:2..389Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93837 3..389 -
1692278216.2114012-CDS-M-pyrifera_M_contig93837:2..3891692278216.2114012-CDS-M-pyrifera_M_contig93837:2..389Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93837 3..389 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93837.21669.1prot_M-pyrifera_M_contig93837.21669.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93837 3..389 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93837.21669.1

>prot_M-pyrifera_M_contig93837.21669.1 ID=prot_M-pyrifera_M_contig93837.21669.1|Name=mRNA_M-pyrifera_M_contig93837.21669.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=129bp
MSLDTKRRIQWRRNKKKADAEGKVGDYRAGEREKEETASKKLEAKSKLEP
KLKAWCYSAGDEFRSVRVLLSSLQTVLWEGHTWKPVPMATLVEPSTVKKA
YRRACLITHPDRQPTSASPERRFISDFVF
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mRNA from alignment at M-pyrifera_M_contig93837:3..389-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93837.21669.1 ID=mRNA_M-pyrifera_M_contig93837.21669.1|Name=mRNA_M-pyrifera_M_contig93837.21669.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=387bp|location=Sequence derived from alignment at M-pyrifera_M_contig93837:3..389- (Macrocystis pyrifera P11B4 male)
ATGTCGCTTGACACGAAGCGGCGCATTCAGTGGCGGAGGAACAAGAAGAA GGCGGATGCCGAAGGGAAGGTGGGAGATTACCGCGCTGGGGAGCGGGAGA AGGAGGAGACGGCGTCCAAGAAGCTGGAGGCGAAGAGCAAGCTGGAGCCC AAGCTCAAGGCGTGGTGTTATTCTGCAGGGGATGAATTTCGATCAGTTCG AGTGTTGCTCTCTTCGCTCCAAACGGTGCTTTGGGAAGGTCACACCTGGA AACCAGTACCCATGGCCACCTTGGTGGAGCCCTCCACCGTGAAGAAGGCA TACCGCAGAGCCTGCCTCATCACCCACCCCGACAGGCAACCCACCTCCGC CTCCCCAGAGAGGAGGTTCATCTCAGACTTTGTCTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93837:3..389-

>mRNA_M-pyrifera_M_contig93837.21669.1 ID=mRNA_M-pyrifera_M_contig93837.21669.1|Name=mRNA_M-pyrifera_M_contig93837.21669.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=774bp|location=Sequence derived from alignment at M-pyrifera_M_contig93837:3..389- (Macrocystis pyrifera P11B4 male)
ATGTCGCTTGACACGAAGCGGCGCATTCAGTGGCGGAGGAACAAGAAGAA
GGCGGATGCCGAAGGGAAGGTGGGAGATTACCGCGCTGGGGAGCGGGAGA
AGGAGGAGACGGCGTCCAAGAAGCTGGAGGCGAAGAGCAAGCTGGAGCCC
AAGCTCAAGGCGTGGTGTTATTCTGCAGGGGATGAATTTCGATCAGTTCG
AGTGTTGCTCTCTTCGCTCCAAACGGTGCTTTGGGAAGGTCACACCTGGA
AACCAGTACCCATGGCCACCTTGGTGGAGCCCTCCACCGTGAAGAAGGCA
TACCGCAGAGCCTGCCTCATCACCCACCCCGACAGGCAACCCACCTCCGC
CTCCCCAGAGAGGAGGTTCATCTCAGACTTTGTCTTCATGTCGCTTGACA
CGAAGCGGCGCATTCAGTGGCGGAGGAACAAGAAGAAGGCGGATGCCGAA
GGGAAGGTGGGAGATTACCGCGCTGGGGAGCGGGAGAAGGAGGAGACGGC
GTCCAAGAAGCTGGAGGCGAAGAGCAAGCTGGAGCCCAAGCTCAAGGCGT
GGTGTTATTCTGCAGGGGATGAATTTCGATCAGTTCGAGTGTTGCTCTCT
TCGCTCCAAACGGTGCTTTGGGAAGGTCACACCTGGAAACCAGTACCCAT
GGCCACCTTGGTGGAGCCCTCCACCGTGAAGAAGGCATACCGCAGAGCCT
GCCTCATCACCCACCCCGACAGGCAACCCACCTCCGCCTCCCCAGAGAGG
AGGTTCATCTCAGACTTTGTCTTC
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