mRNA_M-pyrifera_M_contig93827.21663.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93827.21663.1
Unique NamemRNA_M-pyrifera_M_contig93827.21663.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig93827.21663.1 vs. uniprot
Match: A0A3B3SJF3_9TELE (Carnitine O-palmitoyltransferase 2, mitochondrial-like n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3SJF3_9TELE)

HSP 1 Score: 90.9 bits (224), Expect = 1.190e-20
Identity = 41/82 (50.00%), Postives = 60/82 (73.17%), Query Frame = 1 
Query:    1 FLHKSSIPTMHFQPSLPRLPVPELKDSLRKYVQFVEPLVTEQQLEACKKAVAEFEAGAGPELQEELKRVDAANKHTSYINGE 246
            +LHKS +PTMH+Q SLPRLP+P+L+D++R+Y+    PL+ ++Q    +K   +F+ G G EL EEL  +D  NKHTSYI+G+
Sbjct:   47 YLHKSIVPTMHYQKSLPRLPIPKLEDTIRRYLAAQRPLLNKEQYRNTEKVALDFQKGVGKELHEELVALDKKNKHTSYISGQ 128
[Close]
BLAST of mRNA_M-pyrifera_M_contig93827.21663.1 vs. uniprot
Match: A0A8C0YHT1_CYPCA (Carnitine palmitoyltransferase 2 n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C0YHT1_CYPCA)

HSP 1 Score: 90.1 bits (222), Expect = 1.710e-20
Identity = 40/82 (48.78%), Postives = 61/82 (74.39%), Query Frame = 1 
Query:    1 FLHKSSIPTMHFQPSLPRLPVPELKDSLRKYVQFVEPLVTEQQLEACKKAVAEFEAGAGPELQEELKRVDAANKHTSYINGE 246
            +LH+S +PTMH+Q SLPRLPVP+L+D++R+Y+    PL+ ++Q    +K   +F++G G +L EEL  +D  NKHTSYI+G+
Sbjct:   32 YLHRSVVPTMHYQKSLPRLPVPKLEDTIRRYLAAQRPLLNDEQYSNTEKVAQDFQSGVGKQLHEELVALDKKNKHTSYISGQ 113
[Close]
BLAST of mRNA_M-pyrifera_M_contig93827.21663.1 vs. uniprot
Match: A0A3B3RMX0_9TELE (Carnitine palmitoyltransferase 2 n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3RMX0_9TELE)

HSP 1 Score: 89.7 bits (221), Expect = 2.720e-20
Identity = 40/82 (48.78%), Postives = 61/82 (74.39%), Query Frame = 1 
Query:    1 FLHKSSIPTMHFQPSLPRLPVPELKDSLRKYVQFVEPLVTEQQLEACKKAVAEFEAGAGPELQEELKRVDAANKHTSYINGE 246
            +LHKS +PTMH+Q SLPRLP+P+L+D++R+Y+   +PL+ ++Q    +K   +F++G G EL EEL   D  N+HTSYI+G+
Sbjct:   42 YLHKSIVPTMHYQKSLPRLPIPKLEDTIRRYLAAQKPLLNDEQYSKTEKLARDFQSGVGKELHEELLDQDKRNRHTSYISGQ 123
[Close]
BLAST of mRNA_M-pyrifera_M_contig93827.21663.1 vs. uniprot
Match: A0A8C4P4F7_DRONO (Carn_acyltransf domain-containing protein n=1 Tax=Dromaius novaehollandiae TaxID=8790 RepID=A0A8C4P4F7_DRONO)

HSP 1 Score: 88.6 bits (218), Expect = 7.030e-20
Identity = 42/81 (51.85%), Postives = 58/81 (71.60%), Query Frame = 1 
Query:    1 FLHKSSIPTMHFQPSLPRLPVPELKDSLRKYVQFVEPLVTEQQLEACKKAVAEFEAGAGPELQEELKRVDAANKHTSYING 243
            F+H+S+IPTMHFQ SLPRLP+P+L+ +L++Y+   EPL+ ++Q    K+   EFE GAG  L  EL  +D  N HTSYI+G
Sbjct:   34 FVHRSTIPTMHFQDSLPRLPIPKLEHTLKRYLAAQEPLLDDKQYRNTKRIAKEFEKGAGKRLHRELVELDEKNTHTSYISG 114
[Close]
BLAST of mRNA_M-pyrifera_M_contig93827.21663.1 vs. uniprot
Match: A0A2R7VZH6_ONCFA (Carn_acyltransf domain-containing protein n=1 Tax=Oncopeltus fasciatus TaxID=7536 RepID=A0A2R7VZH6_ONCFA)

HSP 1 Score: 86.3 bits (212), Expect = 7.340e-20
Identity = 39/80 (48.75%), Postives = 59/80 (73.75%), Query Frame = 1 
Query:    1 FLHKSSIPTMHFQPSLPRLPVPELKDSLRKYVQFVEPLVTEQQLEACKKAVAEFEAGAGPELQEELKRVDAANKHTSYIN 240
            +L KS IPT+HFQPSLPRLP+P L+ S  +Y++  +PL + +++ A KK + +F++  GP LQ+EL   ++ NKHTSYI+
Sbjct:    7 YLKKSKIPTLHFQPSLPRLPIPSLEKSCERYIRAQQPLCSSEEISALKKLIEDFQSRDGPILQKELNHQNSINKHTSYIS 86
[Close]
BLAST of mRNA_M-pyrifera_M_contig93827.21663.1 vs. uniprot
Match: A0A6G1PM79_9TELE (Carnitine O-palmitoyltransferase 2, mitochondrial n=1 Tax=Channa argus TaxID=215402 RepID=A0A6G1PM79_9TELE)

HSP 1 Score: 90.9 bits (224), Expect = 1.650e-19
Identity = 42/81 (51.85%), Postives = 59/81 (72.84%), Query Frame = 1 
Query:    1 FLHKSSIPTMHFQPSLPRLPVPELKDSLRKYVQFVEPLVTEQQLEACKKAVAEFEAGAGPELQEELKRVDAANKHTSYING 243
            +LH+S +PTMH+Q SLPRLPVP+L+D++RKY+    PL+ + Q +  +K   +FE+G G +L EEL   D  NKHTSYI+G
Sbjct:   44 YLHQSVVPTMHYQKSLPRLPVPKLEDTIRKYLAAQRPLLDDDQFKTTEKIAKDFESGVGTQLHEELVTQDKTNKHTSYISG 124
[Close]
BLAST of mRNA_M-pyrifera_M_contig93827.21663.1 vs. uniprot
Match: A0A8D2JFK3_VARKO (Carn_acyltransf domain-containing protein n=1 Tax=Varanus komodoensis TaxID=61221 RepID=A0A8D2JFK3_VARKO)

HSP 1 Score: 87.4 bits (215), Expect = 2.080e-19
Identity = 40/82 (48.78%), Postives = 59/82 (71.95%), Query Frame = 1 
Query:    1 FLHKSSIPTMHFQPSLPRLPVPELKDSLRKYVQFVEPLVTEQQLEACKKAVAEFEAGAGPELQEELKRVDAANKHTSYINGE 246
            F+H+S+IPTMHFQPSLPRLP+P+L+D++ +Y+   +PL+ ++Q    +K   EFE G G  +  +L   D  NKHTSYI+G+
Sbjct:   37 FVHRSTIPTMHFQPSLPRLPIPKLEDTINRYLAAQKPLLNDEQYRNTEKIAREFENGEGKFIHRDLLEHDRINKHTSYISGQ 118
[Close]
BLAST of mRNA_M-pyrifera_M_contig93827.21663.1 vs. uniprot
Match: UPI0014713DE4 (carnitine O-palmitoyltransferase 2, mitochondrial n=1 Tax=Thalassophryne amazonica TaxID=390379 RepID=UPI0014713DE4)

HSP 1 Score: 90.5 bits (223), Expect = 2.260e-19
Identity = 41/81 (50.62%), Postives = 61/81 (75.31%), Query Frame = 1 
Query:    1 FLHKSSIPTMHFQPSLPRLPVPELKDSLRKYVQFVEPLVTEQQLEACKKAVAEFEAGAGPELQEELKRVDAANKHTSYING 243
            +LH+S +PTMH+Q SLPRLP+P+L++++R+Y+    PL+ + Q    +K  A+F++GAG +LQEEL   D  NKHTSYI+G
Sbjct:   44 YLHQSIVPTMHYQKSLPRLPIPKLENTIRRYLAAQRPLLDDDQFRTTEKLAADFQSGAGKQLQEELVAQDKNNKHTSYISG 124
[Close]
BLAST of mRNA_M-pyrifera_M_contig93827.21663.1 vs. uniprot
Match: A0A6P8NBQ7_GEOSA (carnitine O-palmitoyltransferase 2, mitochondrial isoform X1 n=2 Tax=Geotrypetes seraphini TaxID=260995 RepID=A0A6P8NBQ7_GEOSA)

HSP 1 Score: 90.1 bits (222), Expect = 3.080e-19
Identity = 41/81 (50.62%), Postives = 58/81 (71.60%), Query Frame = 1 
Query:    1 FLHKSSIPTMHFQPSLPRLPVPELKDSLRKYVQFVEPLVTEQQLEACKKAVAEFEAGAGPELQEELKRVDAANKHTSYING 243
            +LHKS +PTMHFQPSLPRLP+P+L+D++R+Y+    PL+ E+Q    ++    FE G G +L ++L   D  NKHTSYI+G
Sbjct:   30 YLHKSVVPTMHFQPSLPRLPIPKLEDTMRRYLNAQRPLLNEEQYRKTEQLARNFEKGIGKQLHKQLVAEDKQNKHTSYISG 110
[Close]
BLAST of mRNA_M-pyrifera_M_contig93827.21663.1 vs. uniprot
Match: A0A6P7M489_BETSP (carnitine O-palmitoyltransferase 2, mitochondrial n=1 Tax=Betta splendens TaxID=158456 RepID=A0A6P7M489_BETSP)

HSP 1 Score: 90.1 bits (222), Expect = 3.080e-19
Identity = 42/81 (51.85%), Postives = 59/81 (72.84%), Query Frame = 1 
Query:    1 FLHKSSIPTMHFQPSLPRLPVPELKDSLRKYVQFVEPLVTEQQLEACKKAVAEFEAGAGPELQEELKRVDAANKHTSYING 243
            +LH+S +PTMH+Q SLPRLPVP+L+DS+R+Y+    PL+ + Q  A +K   +F++G G +L EEL   D  NKHTSYI+G
Sbjct:   39 YLHQSVVPTMHYQKSLPRLPVPKLEDSIRRYLAAQRPLLDDDQFRATEKIAQDFQSGVGKQLHEELVAHDKRNKHTSYISG 119
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93827.21663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3B3SJF3_9TELE1.190e-2050.00Carnitine O-palmitoyltransferase 2, mitochondrial-... [more]
A0A8C0YHT1_CYPCA1.710e-2048.78Carnitine palmitoyltransferase 2 n=1 Tax=Cyprinus ... [more]
A0A3B3RMX0_9TELE2.720e-2048.78Carnitine palmitoyltransferase 2 n=1 Tax=Paramormy... [more]
A0A8C4P4F7_DRONO7.030e-2051.85Carn_acyltransf domain-containing protein n=1 Tax=... [more]
A0A2R7VZH6_ONCFA7.340e-2048.75Carn_acyltransf domain-containing protein n=1 Tax=... [more]
A0A6G1PM79_9TELE1.650e-1951.85Carnitine O-palmitoyltransferase 2, mitochondrial ... [more]
A0A8D2JFK3_VARKO2.080e-1948.78Carn_acyltransf domain-containing protein n=1 Tax=... [more]
UPI0014713DE42.260e-1950.62carnitine O-palmitoyltransferase 2, mitochondrial ... [more]
A0A6P8NBQ7_GEOSA3.080e-1950.62carnitine O-palmitoyltransferase 2, mitochondrial ... [more]
A0A6P7M489_BETSP3.080e-1951.85carnitine O-palmitoyltransferase 2, mitochondrial ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93827contigM-pyrifera_M_contig93827:449..694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue6.6e-15
Seed eggNOG ortholog325452.fgenesh_scip_prom.46568.2048
Preferred nameCPT2
KEGG rclassRC00004,RC00037,RC00290,RC02816
KEGG koko:K01787,ko:K08766
KEGG ReactionR01207,R01923
KEGG Pathwayko00071,ko00520,ko01212,ko03320,ko04714,map00071,map00520,map01212,map03320,map04714
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004095,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006082,GO:0006091,GO:0006629,GO:0006631,GO:0006635,GO:0006810,GO:0006811,GO:0006820,GO:0006839,GO:0006853,GO:0006869,GO:0006950,GO:0008150,GO:0008152,GO:0008374,GO:0009056,GO:0009058,GO:0009062,GO:0009605,GO:0009987,GO:0009991,GO:0010876,GO:0015711,GO:0015718,GO:0015849,GO:0015908,GO:0015909,GO:0016020,GO:0016042,GO:0016054,GO:0016406,GO:0016409,GO:0016416,GO:0016740,GO:0016746,GO:0016747,GO:0017144,GO:0019216,GO:0019222,GO:0019395,GO:0019752,GO:0019866,GO:0030258,GO:0031090,GO:0031667,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032365,GO:0032787,GO:0033036,GO:0034220,GO:0034440,GO:0042592,GO:0042594,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046395,GO:0046907,GO:0046942,GO:0046950,GO:0046951,GO:0048878,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0055088,GO:0055090,GO:0055114,GO:0065007,GO:0065008,GO:0070013,GO:0070328,GO:0071702,GO:0071704,GO:0072329,GO:0080090,GO:0098656,GO:1901568,GO:1901570,GO:1901575,GO:1901576,GO:1902001,GO:1902224,GO:1903825,GO:1905039,GO:1990542
EggNOG free text desc.Choline/Carnitine o-acyltransferase
EggNOG OGs3QAZ9@4776,KOG3719@1,KOG3719@2759
EC2.3.1.21,5.1.3.8
COG Functional cat.I
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size246
Cds size219
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816851.5660944-UTR-M-pyrifera_M_contig93827:448..4751622816851.5660944-UTR-M-pyrifera_M_contig93827:448..475Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig93827 449..475 +
1692278216.0787385-UTR-M-pyrifera_M_contig93827:448..4751692278216.0787385-UTR-M-pyrifera_M_contig93827:448..475Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig93827 449..475 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816851.5778108-CDS-M-pyrifera_M_contig93827:475..6941622816851.5778108-CDS-M-pyrifera_M_contig93827:475..694Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93827 476..694 +
1692278216.0900006-CDS-M-pyrifera_M_contig93827:475..6941692278216.0900006-CDS-M-pyrifera_M_contig93827:475..694Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93827 476..694 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93827.21663.1prot_M-pyrifera_M_contig93827.21663.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93827 476..694 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93827.21663.1

>prot_M-pyrifera_M_contig93827.21663.1 ID=prot_M-pyrifera_M_contig93827.21663.1|Name=mRNA_M-pyrifera_M_contig93827.21663.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=73bp
MHFQPSLPRLPVPELKDSLRKYVQFVEPLVTEQQLEACKKAVAEFEAGAG
PELQEELKRVDAANKHTSYINGE
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mRNA from alignment at M-pyrifera_M_contig93827:449..694+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93827.21663.1 ID=mRNA_M-pyrifera_M_contig93827.21663.1|Name=mRNA_M-pyrifera_M_contig93827.21663.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=246bp|location=Sequence derived from alignment at M-pyrifera_M_contig93827:449..694+ (Macrocystis pyrifera P11B4 male)
TTCCTGCACAAGAGCTCGATCCCAACCATGCACTTTCAGCCGTCGCTGCC
GCGGCTGCCCGTGCCGGAGCTGAAGGACTCGCTGCGCAAGTACGTCCAAT
TCGTTGAGCCTCTTGTCACTGAGCAGCAGTTGGAAGCATGCAAGAAGGCG
GTGGCCGAGTTTGAGGCTGGCGCCGGTCCGGAGCTGCAGGAGGAGCTCAA
ACGCGTCGATGCGGCCAACAAGCACACCAGCTACATCAACGGTGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93827:449..694+

>mRNA_M-pyrifera_M_contig93827.21663.1 ID=mRNA_M-pyrifera_M_contig93827.21663.1|Name=mRNA_M-pyrifera_M_contig93827.21663.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig93827:449..694+ (Macrocystis pyrifera P11B4 male)
ATGCACTTTCAGCCGTCGCTGCCGCGGCTGCCCGTGCCGGAGCTGAAGGA
CTCGCTGCGCAAGTACGTCCAATTCGTTGAGCCTCTTGTCACTGAGCAGC
AGTTGGAAGCATGCAAGAAGGCGGTGGCCGAGTTTGAGGCTGGCGCCGGT
CCGGAGCTGCAGGAGGAGCTCAAACGCGTCGATGCGGCCAACAAGCACAC
CAGCTACATCAACGGTGAGATGCACTTTCAGCCGTCGCTGCCGCGGCTGC
CCGTGCCGGAGCTGAAGGACTCGCTGCGCAAGTACGTCCAATTCGTTGAG
CCTCTTGTCACTGAGCAGCAGTTGGAAGCATGCAAGAAGGCGGTGGCCGA
GTTTGAGGCTGGCGCCGGTCCGGAGCTGCAGGAGGAGCTCAAACGCGTCG
ATGCGGCCAACAAGCACACCAGCTACATCAACGGTGAG
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