mRNA_M-pyrifera_M_contig93810.21660.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93810.21660.1
Unique NamemRNA_M-pyrifera_M_contig93810.21660.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig93810.21660.1 vs. uniprot
Match: A0A2P6MTI8_9EUKA (Ankyrin repeat protein n=2 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MTI8_9EUKA)

HSP 1 Score: 127 bits (320), Expect = 1.240e-31
Identity = 80/215 (37.21%), Postives = 112/215 (52.09%), Query Frame = 1
Query:    1 LMAAGVDRTLEDKWSQTAEQVASSHGEGTLAQIIRDGVY--QQPAESVA----PPSQAAKQCGNKMRVLSKLMEAPLSEEQFAAWLAMDDIDINGRDMYRWTALHKLASWNKHTCLAQLLADPRLETATPAGHGGNTPLHAALEMGAERCALLLMENARVQEGVDQPNDDGRTALHFAVLFNNVTAVERLLSIGASPYTTSRCDGKNPWQIAAEH 627
            L+  G DR LEDKW +T + VA  +GE + +++I D V    QP  ++     PPS+   Q     RVLSKL+EAPL E+    W+   ++DING D  RWTALHK+A+W K   L  LL  P +   +  G  G+TPLH+AL  GA +CA +L+ + R    + + N+ G T L  A      +    L         T   +GK  W  A E+
Sbjct:  115 LLEGGADRELEDKWGKTPQDVAQDYGETSTSKVIHDFVLGQSQPPSTITKMTLPPSKTPVQ----KRVLSKLLEAPLDEQAALTWIQDPNMDINGADYMRWTALHKVAAWEKPNVLRALLDHPDIRVDS-LGMDGDTPLHSALSNGAIQCAHMLILDGR--SPLTRANNTGVTPLMLAAALGEESLFRALYDESLVKEETR--EGKTAWHFAREN 320          
BLAST of mRNA_M-pyrifera_M_contig93810.21660.1 vs. uniprot
Match: A0A482ST61_9ARCH (Ankyrin repeat domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482ST61_9ARCH)

HSP 1 Score: 74.7 bits (182), Expect = 4.450e-12
Identity = 52/128 (40.62%), Postives = 70/128 (54.69%), Query Frame = 1
Query:  139 APPSQAAKQCGNKMRV-LSKLMEAPLSEEQF-AAWLAMDDIDINGRDMYRWTALHKLASWNKHTCLAQLLADPRLETATPAGHGGNTPLHAALEMGAERCALLLMENARVQEGVDQPNDDGRTALHFA 516
            APPSQ AK     +RV LSK +E P   +   +A L+ D IDING+DM+  TALHKLA+WNK   +  LLAD   +    +   G   LH+A++MGA      L+    +   +   +  GRTAL  A
Sbjct:  263 APPSQPAKAINKPLRVALSKQIEFPGDPDTIRSALLSKDKIDINGKDMFGLTALHKLAAWNKVDLMEILLADSDSDVNVVSPSVGGV-LHSAVDMGALEAVSRLLTMPTLNLALT--DKQGRTALELA 387          
BLAST of mRNA_M-pyrifera_M_contig93810.21660.1 vs. uniprot
Match: A0A7S4HRP6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HRP6_9EUKA)

HSP 1 Score: 68.6 bits (166), Expect = 1.810e-11
Identity = 38/99 (38.38%), Postives = 55/99 (55.56%), Query Frame = 1
Query:    1 LMAAGVDRTLEDKWSQTAEQVASSHGEGTLAQIIRD---GVYQQPAESVAPPSQAAKQCGNKM-------RVLSKLMEAPLSEEQFAAWLAMDDIDING 267
            L+ AG D++L+D W       A+ HG   LA++I +   GV +   +S  P +  AK    K        ++LSK+MEAPL +E F +WL  D+IDING
Sbjct:   13 LLQAGADKSLQDNWGSNPSTSATEHGFPELAEMINNHVTGVPKNFLDSYLPKTTQAKSATTKASVTPMRKKILSKMMEAPLKDEDFESWLQDDEIDING 111          
BLAST of mRNA_M-pyrifera_M_contig93810.21660.1 vs. uniprot
Match: A0A158RAV3_THECL (ANK_REP_REGION domain-containing protein n=1 Tax=Thelazia callipaeda TaxID=103827 RepID=A0A158RAV3_THECL)

HSP 1 Score: 58.9 bits (141), Expect = 1.360e-6
Identity = 58/195 (29.74%), Postives = 90/195 (46.15%), Query Frame = 1
Query:   85 TLAQIIRDG--VYQQPAESVAPPSQAAKQCGNKMRVLSKLMEAPLSEEQFAAWLAMDDIDINGRDMYRWTALHKLASWNKHTCLAQLLADPRLETATPA-GHGGNTPLH-AALEMGAERCALLLMENARVQEGVDQPNDDGRTALHFAVLFNNVTAVERLLSIGASPYTTSRCDGKNPWQIAAEHDVLKPVAALL 657
            TL Q IRD   V  +    + P   AA  CG+ +++L  L+++   + +    +  DD+   GR     + LH  AS  +  C  +LL D RL          G+TPL  AA    A+   ++++   R    +   ++DGRTALH AV+  N T ++ LL +   P  T   D + P   AA+  +   V  LL
Sbjct:   91 TLPQHIRDTPWVLLKNRRQITPIHLAAL-CGH-VKILKMLLQSTSLDSENFYQMVTDDM---GR-----SPLHYAASRARLEC-CELLLDERLGLPIDQKDRNGHTPLMCAAASCYADASEVVILLGRRKINSITSRDNDGRTALHLAVIAQNYTVIDTLLDVLECPSETFDNDARTPLHYAAQRGLQDMVQKLL 274          
BLAST of mRNA_M-pyrifera_M_contig93810.21660.1 vs. uniprot
Match: A0A507FP88_9FUNG (Uncharacterized protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FP88_9FUNG)

HSP 1 Score: 58.5 bits (140), Expect = 1.640e-6
Identity = 50/163 (30.67%), Postives = 76/163 (46.63%), Query Frame = 1
Query:    1 LMAAGVDRTLEDKWSQTAEQVASSHGEGTLAQIIRDGVYQQPAESVAPPSQAAKQCGNKMRVLSKLMEAPLSEEQFAAWLAM-DDIDINGRDMYRWTALHKLASWNKHTCLAQLLADPRLETATPAGHG--------GNTPLHAALEMGAERCALLLMENARV 462
            LMAA   R   ++ S  A QV   H    +     + + Q  + +V  P Q   Q   K++ +S  +E P   +   + L    +  + GRDM+ W+ALHKLASWNK   L QL+ D     A P+  G        G T +H A++ GA     +L+ + R+
Sbjct:  259 LMAALAKRN--ERVSTVAAQVQVKH----IFSSHTESINQPNSTAVVAPVQVTPQ-PKKLKAISSYIEYPGDTDALTSMLKNPSEYSVLGRDMFGWSALHKLASWNKPDLL-QLVLD-----AIPSEDGINDNSNADGFTAMHCAIDNGALDAVSVLVRDGRI 408          
BLAST of mRNA_M-pyrifera_M_contig93810.21660.1 vs. uniprot
Match: E9GBW6_DAPPU (Uncharacterized protein n=1 Tax=Daphnia pulex TaxID=6669 RepID=E9GBW6_DAPPU)

HSP 1 Score: 56.2 bits (134), Expect = 1.040e-5
Identity = 48/127 (37.80%), Postives = 61/127 (48.03%), Query Frame = 1
Query:  256 DINGRDMYRWTALHKL---ASWNKHTC-LAQLLADPRLETATPAGHGGNTPLH-AALEMGAERCALLLMENARVQEGVDQPNDDGRTALHFAVLFNNVTAVERLLSIGASPYTTSRCDGKNPWQIAA 621
            DING D    T LH     A+W  +T  L    ADP +     A   GNTPLH AA    A     L++EN +V   ++  N  G TALH A++  NV    R+L  GA P T    D  N + +AA
Sbjct:  360 DINGTDNVGSTPLHYAIMGANWEINTRHLIGKGADPNI-----ADKKGNTPLHLAASHAKAIETISLILENQQVD--INHINKGGGTALHHAIIAQNVEMARRMLEKGADP-TLRDNDDTNSFHLAA 478          
BLAST of mRNA_M-pyrifera_M_contig93810.21660.1 vs. uniprot
Match: A0A8C0ZUK4_CASCN (Uncharacterized protein n=1 Tax=Castor canadensis TaxID=51338 RepID=A0A8C0ZUK4_CASCN)

HSP 1 Score: 54.3 bits (129), Expect = 1.310e-5
Identity = 32/99 (32.32%), Postives = 53/99 (53.54%), Query Frame = 1
Query:  259 INGRDMYRWTALHKLASWNKHTCLAQLLADPRLETATPAGHGGNTPLHAALEMGAERCALLLMENARVQEGVDQPNDDGRTALHFAVLFNNVTAVERLL 555
            +N RD  + TALH  A +N    +   L +   E   P  +  +TPL  A++   ++CAL+L+EN       +  +++G TALHFA+  +N +   +LL
Sbjct:   71 LNDRDRKQRTALH-FACFNGQVNVVSFLVEENCEI-NPCDNDNSTPLMKAVQACCDKCALILLENGA---NPNMQDNNGNTALHFAIYVDNRSMAAKLL 164          
BLAST of mRNA_M-pyrifera_M_contig93810.21660.1 vs. uniprot
Match: UPI001EDE0A0B (serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like n=1 Tax=Daphnia pulex TaxID=6669 RepID=UPI001EDE0A0B)

HSP 1 Score: 55.5 bits (132), Expect = 2.340e-5
Identity = 52/140 (37.14%), Postives = 67/140 (47.86%), Query Frame = 1
Query:  250 DIDINGRDMYRWTALHKLASWNKHTCLAQLLADPRLETATPAGHGGNTP----LHAALEMGAERCALLLMENARVQEGVDQPNDDGRTALHFAVLFNNVTAVERLLSIGASPYTTSRCDGKNPWQIAAEHDVLKPVAALL 657
            DID+   D    T LH LA     T + + L +P L  A P    G+        A   M AE   +LL   A  +  VD  N+DG TALHFA   +NVTAV++LL  GA+P      +GK+P   AA      P+  LL
Sbjct:  324 DIDLLYDDR---TPLH-LAIMLSKTKMVEHLLNPPLN-ADPTKRDGSRKDALQYAATTTMEAEIFDVLL---AHPKVKVDDANEDGETALHFAASLSNVTAVQKLLDKGANPSVVDN-EGKSPLNRAAHERDGCPIIDLL 454          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93810.21660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A2P6MTI8_9EUKA1.240e-3137.21Ankyrin repeat protein n=2 Tax=Planoprotostelium f... [more]
A0A482ST61_9ARCH4.450e-1240.63Ankyrin repeat domain-containing protein n=1 Tax=a... [more]
A0A7S4HRP6_9EUKA1.810e-1138.38Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A158RAV3_THECL1.360e-629.74ANK_REP_REGION domain-containing protein n=1 Tax=T... [more]
A0A507FP88_9FUNG1.640e-630.67Uncharacterized protein n=1 Tax=Chytriomyces confe... [more]
E9GBW6_DAPPU1.040e-537.80Uncharacterized protein n=1 Tax=Daphnia pulex TaxI... [more]
A0A8C0ZUK4_CASCN1.310e-532.32Uncharacterized protein n=1 Tax=Castor canadensis ... [more]
UPI001EDE0A0B2.340e-537.14serine/threonine-protein phosphatase 6 regulatory ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93810contigM-pyrifera_M_contig93810:6..662 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue4e-07
Seed eggNOG ortholog529818.AMSG_09743T0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ankyrin repeats (many copies)
EggNOG OGs2F1JF@1,2T2JC@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size657
Cds size654
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816851.4218755-UTR-M-pyrifera_M_contig93810:5..81622816851.4218755-UTR-M-pyrifera_M_contig93810:5..8Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig93810 6..8 +
1692278216.0005198-UTR-M-pyrifera_M_contig93810:5..81692278216.0005198-UTR-M-pyrifera_M_contig93810:5..8Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig93810 6..8 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816851.4352255-CDS-M-pyrifera_M_contig93810:8..6621622816851.4352255-CDS-M-pyrifera_M_contig93810:8..662Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93810 9..662 +
1692278216.0130477-CDS-M-pyrifera_M_contig93810:8..6621692278216.0130477-CDS-M-pyrifera_M_contig93810:8..662Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93810 9..662 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93810.21660.1prot_M-pyrifera_M_contig93810.21660.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93810 9..662 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93810.21660.1

>prot_M-pyrifera_M_contig93810.21660.1 ID=prot_M-pyrifera_M_contig93810.21660.1|Name=mRNA_M-pyrifera_M_contig93810.21660.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=218bp
MAAGVDRTLEDKWSQTAEQVASSHGEGTLAQIIRDGVYQQPAESVAPPSQ
AAKQCGNKMRVLSKLMEAPLSEEQFAAWLAMDDIDINGRDMYRWTALHKL
ASWNKHTCLAQLLADPRLETATPAGHGGNTPLHAALEMGAERCALLLMEN
ARVQEGVDQPNDDGRTALHFAVLFNNVTAVERLLSIGASPYTTSRCDGKN
PWQIAAEHDVLKPVAALL
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mRNA from alignment at M-pyrifera_M_contig93810:6..662+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93810.21660.1 ID=mRNA_M-pyrifera_M_contig93810.21660.1|Name=mRNA_M-pyrifera_M_contig93810.21660.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=657bp|location=Sequence derived from alignment at M-pyrifera_M_contig93810:6..662+ (Macrocystis pyrifera P11B4 male)
CTGATGGCAGCAGGAGTCGACCGTACCTTAGAAGATAAGTGGAGCCAGAC TGCTGAGCAAGTGGCCTCTTCGCACGGTGAGGGAACGCTTGCTCAGATCA TTAGAGACGGAGTCTACCAGCAGCCGGCAGAGTCGGTGGCTCCCCCTTCA CAGGCAGCGAAGCAGTGTGGAAATAAGATGAGGGTACTCTCGAAGCTGAT GGAGGCACCTCTCTCTGAAGAACAGTTCGCTGCCTGGCTGGCGATGGACG ACATTGATATCAACGGCCGTGATATGTACAGGTGGACTGCGCTGCACAAG CTGGCTTCGTGGAACAAGCACACTTGCTTGGCCCAGTTGCTTGCAGATCC TCGTCTGGAGACTGCCACCCCTGCGGGGCACGGCGGCAACACGCCCCTGC ACGCCGCACTGGAGATGGGGGCCGAGCGCTGCGCCTTGCTTCTCATGGAG AATGCGCGTGTGCAAGAGGGAGTTGACCAGCCCAACGATGATGGCCGTAC AGCGCTTCACTTTGCTGTGCTCTTCAACAACGTTACAGCCGTCGAGAGGC TACTCTCCATCGGCGCCTCTCCGTACACAACGTCGCGGTGTGACGGCAAG AACCCATGGCAAATAGCGGCGGAGCACGACGTGCTCAAGCCAGTGGCTGC GCTGCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93810:6..662+

>mRNA_M-pyrifera_M_contig93810.21660.1 ID=mRNA_M-pyrifera_M_contig93810.21660.1|Name=mRNA_M-pyrifera_M_contig93810.21660.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1308bp|location=Sequence derived from alignment at M-pyrifera_M_contig93810:6..662+ (Macrocystis pyrifera P11B4 male)
ATGGCAGCAGGAGTCGACCGTACCTTAGAAGATAAGTGGAGCCAGACTGC
TGAGCAAGTGGCCTCTTCGCACGGTGAGGGAACGCTTGCTCAGATCATTA
GAGACGGAGTCTACCAGCAGCCGGCAGAGTCGGTGGCTCCCCCTTCACAG
GCAGCGAAGCAGTGTGGAAATAAGATGAGGGTACTCTCGAAGCTGATGGA
GGCACCTCTCTCTGAAGAACAGTTCGCTGCCTGGCTGGCGATGGACGACA
TTGATATCAACGGCCGTGATATGTACAGGTGGACTGCGCTGCACAAGCTG
GCTTCGTGGAACAAGCACACTTGCTTGGCCCAGTTGCTTGCAGATCCTCG
TCTGGAGACTGCCACCCCTGCGGGGCACGGCGGCAACACGCCCCTGCACG
CCGCACTGGAGATGGGGGCCGAGCGCTGCGCCTTGCTTCTCATGGAGAAT
GCGCGTGTGCAAGAGGGAGTTGACCAGCCCAACGATGATGGCCGTACAGC
GCTTCACTTTGCTGTGCTCTTCAACAACGTTACAGCCGTCGAGAGGCTAC
TCTCCATCGGCGCCTCTCCGTACACAACGTCGCGGTGTGACGGCAAGAAC
CCATGGCAAATAGCGGCGGAGCACGACGTGCTCAAGCCAGTGGCTGCGCT
GCTCATGGCAGCAGGAGTCGACCGTACCTTAGAAGATAAGTGGAGCCAGA
CTGCTGAGCAAGTGGCCTCTTCGCACGGTGAGGGAACGCTTGCTCAGATC
ATTAGAGACGGAGTCTACCAGCAGCCGGCAGAGTCGGTGGCTCCCCCTTC
ACAGGCAGCGAAGCAGTGTGGAAATAAGATGAGGGTACTCTCGAAGCTGA
TGGAGGCACCTCTCTCTGAAGAACAGTTCGCTGCCTGGCTGGCGATGGAC
GACATTGATATCAACGGCCGTGATATGTACAGGTGGACTGCGCTGCACAA
GCTGGCTTCGTGGAACAAGCACACTTGCTTGGCCCAGTTGCTTGCAGATC
CTCGTCTGGAGACTGCCACCCCTGCGGGGCACGGCGGCAACACGCCCCTG
CACGCCGCACTGGAGATGGGGGCCGAGCGCTGCGCCTTGCTTCTCATGGA
GAATGCGCGTGTGCAAGAGGGAGTTGACCAGCCCAACGATGATGGCCGTA
CAGCGCTTCACTTTGCTGTGCTCTTCAACAACGTTACAGCCGTCGAGAGG
CTACTCTCCATCGGCGCCTCTCCGTACACAACGTCGCGGTGTGACGGCAA
GAACCCATGGCAAATAGCGGCGGAGCACGACGTGCTCAAGCCAGTGGCTG
CGCTGCTC
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