mRNA_M-pyrifera_M_contig93682.21641.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93682.21641.1
Unique NamemRNA_M-pyrifera_M_contig93682.21641.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig93682.21641.1 vs. uniprot
Match: A0A6H5JJS4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJS4_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 4.370e-10
Identity = 26/49 (53.06%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:    1 DCNATEVLPLELRQACRAFYVEGDGNCLWRSISHGLWGTDYFWPHVKLV 147
            D  AT +L  ELR+   A +VEGDGNC WRS++  LWGTD +W  +KL 
Sbjct:   87 DPKATMILTPELRKTFVALWVEGDGNCFWRSMAKALWGTDEYWRQLKLA 135
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93682.21641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJS4_9PHAE4.370e-1053.06SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93682contigM-pyrifera_M_contig93682:287..433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816849.899865-CDS-M-pyrifera_M_contig93682:286..4331622816849.899865-CDS-M-pyrifera_M_contig93682:286..433Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93682 287..433 -
1692278214.9347672-CDS-M-pyrifera_M_contig93682:286..4331692278214.9347672-CDS-M-pyrifera_M_contig93682:286..433Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93682 287..433 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93682.21641.1prot_M-pyrifera_M_contig93682.21641.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93682 287..433 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93682.21641.1

>prot_M-pyrifera_M_contig93682.21641.1 ID=prot_M-pyrifera_M_contig93682.21641.1|Name=mRNA_M-pyrifera_M_contig93682.21641.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=49bp
DCNATEVLPLELRQACRAFYVEGDGNCLWRSISHGLWGTDYFWPHVKLV
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mRNA from alignment at M-pyrifera_M_contig93682:287..433-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93682.21641.1 ID=mRNA_M-pyrifera_M_contig93682.21641.1|Name=mRNA_M-pyrifera_M_contig93682.21641.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=147bp|location=Sequence derived from alignment at M-pyrifera_M_contig93682:287..433- (Macrocystis pyrifera P11B4 male)
GACTGCAACGCCACAGAGGTGCTGCCTCTAGAGTTGCGTCAGGCGTGTCG
CGCCTTCTACGTAGAAGGCGACGGAAACTGCCTGTGGCGTTCTATTTCTC
ACGGCCTATGGGGCACCGATTACTTCTGGCCCCATGTGAAGCTCGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93682:287..433-

>mRNA_M-pyrifera_M_contig93682.21641.1 ID=mRNA_M-pyrifera_M_contig93682.21641.1|Name=mRNA_M-pyrifera_M_contig93682.21641.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig93682:287..433- (Macrocystis pyrifera P11B4 male)
GACTGCAACGCCACAGAGGTGCTGCCTCTAGAGTTGCGTCAGGCGTGTCG
CGCCTTCTACGTAGAAGGCGACGGAAACTGCCTGTGGCGTTCTATTTCTC
ACGGCCTATGGGGCACCGATTACTTCTGGCCCCATGTGAAGCTCGTGGAC
TGCAACGCCACAGAGGTGCTGCCTCTAGAGTTGCGTCAGGCGTGTCGCGC
CTTCTACGTAGAAGGCGACGGAAACTGCCTGTGGCGTTCTATTTCTCACG
GCCTATGGGGCACCGATTACTTCTGGCCCCATGTGAAGCTCGTG
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