mRNA_M-pyrifera_M_contig93655.21632.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93655.21632.1
Unique NamemRNA_M-pyrifera_M_contig93655.21632.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig93655.21632.1 vs. uniprot
Match: UPI0019ACD175 (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=UPI0019ACD175)

HSP 1 Score: 157 bits (397), Expect = 6.170e-42
Identity = 82/168 (48.81%), Postives = 106/168 (63.10%), Query Frame = 1 
Query:    4 LHDPVANLLWHNDESCPSTYQDIMAKLREVDTDGC-TGERDGIKTRVVSETAQL--ADEATSYRLVTSRRCSDRAEHDILFSLFGVRAGATSLPETVEIIAFDKTEGVFNYYEAGPDAIEFFGNSRD-MKKG-SQGNTRRCAACHTGGGLIMKELDTPWLHWEGHTDT 492
            L DP++  +      CP+ ++D+M KLR  D  GC  G   G  TR V+ET QL       S+R V SRRC++R E ++  SLFG+RA   +LP+  E++AFD     FNYYE       +FG+S D ++KG  QG+TRRCA CHTGGGL+MKELDTPWLHW GH  T
Sbjct:   69 LADPISVFVLRGGSGCPTNFKDVMKKLRIEDKTGCEAGGAAGQSTRFVTETGQLDAGSMLQSFRTVLSRRCNNRQEFELTMSLFGIRADG-NLPDAAELVAFDPESKEFNYYEVADGRWTYFGSSSDFVEKGPGQGDTRRCANCHTGGGLVMKELDTPWLHWTGHFQT 235
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BLAST of mRNA_M-pyrifera_M_contig93655.21632.1 vs. uniprot
Match: A0A7Y1TTT3_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y1TTT3_9ACTN)

HSP 1 Score: 134 bits (336), Expect = 2.300e-33
Identity = 73/177 (41.24%), Postives = 107/177 (60.45%), Query Frame = 1 
Query:    1 RLHDPVANLLWHND----ESCPSTYQDIMAKLREVDTDGCTGERDGIKTRVVSETAQLADEATS--YRLVTSRRCSDRAEHDILFSLFGVRAG-------ATSLPETVEIIAFDKTEGVFNYYEA-GPDAIEFFGNSRD-MKKGSQG----NTRRCAACHTGGGLIMKELDTPWLHW 474
            RL D  AN L+  +    + CP+T++D++ KL++ D  GC      IK+  VSE  +LA +     YR+VT R+C  R + D+LFS FG   G        + LP+ VE++AFD++ GV+NYY+A G  ++ FFGNS+  + +G  G    + R C  CHTGGG I KE+D+PW+HW
Sbjct:   70 RLDDAFANKLFKAEADDTQPCPATFEDMVEKLKQTDNSGCN-----IKSFTVSEQGELASQGDGLGYRVVTVRQCDGRDDSDVLFSAFGFHDGDGPMGVDGSGLPDDVEVMAFDESSGVYNYYKALGDGSVGFFGNSKHYIDEGPAGPGLTSVRGCGNCHTGGGPIFKEMDSPWVHW 241
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BLAST of mRNA_M-pyrifera_M_contig93655.21632.1 vs. uniprot
Match: A0A7V9RBC6_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V9RBC6_9DELT)

HSP 1 Score: 125 bits (315), Expect = 1.430e-30
Identity = 74/161 (45.96%), Postives = 90/161 (55.90%), Query Frame = 1 
Query:   46 SCPSTYQDIMAKLREVDTDGCTGERDGIKTRVVSETA-QLADEATSYRLVTSRRCSDRAEHDILFSLFGVRAGATSL------------PETVEIIAFDKTEGVFNYYEAGPDAIEFFGNSRDMKKGSQG-----NTRRCAACHTGGGLIMKELDTPWLHW 474
            +CP     IMAKL + DT  C G    I T+VVSE A +L      YR VTSR C  R E  +LFS FG  +GATS             P  VE+IAFD+ +GVFNYY+     ++FFG+S D      G     NTR CA CH GGG+ MKEL++PW HW
Sbjct:  106 TCPVDMPGIMAKLEKTDTKSCNG----ISTQVVSENAAKLGATKADYRAVTSRDCDGRGEFGLLFSSFGF-SGATSAKGTGSHITEKEHPGEVEVIAFDEVDGVFNYYKEIGGKMQFFGSSIDFVAAGPGGPGLTNTRGCANCHPGGGINMKELESPWTHW 261
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93655.21632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI0019ACD1756.170e-4248.81Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A7Y1TTT3_9ACTN2.300e-3341.24Uncharacterized protein n=1 Tax=Acidimicrobiia bac... [more]
A0A7V9RBC6_9DELT1.430e-3045.96Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93655contigM-pyrifera_M_contig93655:44..535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size492
Cds size492
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816849.4754705-CDS-M-pyrifera_M_contig93655:43..5351622816849.4754705-CDS-M-pyrifera_M_contig93655:43..535Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93655 44..535 -
1692278214.7038078-CDS-M-pyrifera_M_contig93655:43..5351692278214.7038078-CDS-M-pyrifera_M_contig93655:43..535Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93655 44..535 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93655.21632.1prot_M-pyrifera_M_contig93655.21632.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93655 44..535 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93655.21632.1

>prot_M-pyrifera_M_contig93655.21632.1 ID=prot_M-pyrifera_M_contig93655.21632.1|Name=mRNA_M-pyrifera_M_contig93655.21632.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=164bp
RLHDPVANLLWHNDESCPSTYQDIMAKLREVDTDGCTGERDGIKTRVVSE
TAQLADEATSYRLVTSRRCSDRAEHDILFSLFGVRAGATSLPETVEIIAF
DKTEGVFNYYEAGPDAIEFFGNSRDMKKGSQGNTRRCAACHTGGGLIMKE
LDTPWLHWEGHTDT
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mRNA from alignment at M-pyrifera_M_contig93655:44..535-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93655.21632.1 ID=mRNA_M-pyrifera_M_contig93655.21632.1|Name=mRNA_M-pyrifera_M_contig93655.21632.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig93655:44..535- (Macrocystis pyrifera P11B4 male)
CGACTTCACGATCCCGTCGCAAACCTGCTTTGGCACAACGACGAGAGCTG
CCCGAGCACATACCAAGACATCATGGCCAAGCTTCGCGAAGTCGATACCG
ATGGCTGTACCGGCGAGCGCGATGGCATCAAGACTCGCGTAGTAAGTGAG
ACCGCTCAACTCGCCGACGAAGCAACAAGCTACCGACTTGTGACATCACG
CCGCTGTAGTGACCGAGCGGAGCACGACATCCTCTTCTCGCTCTTTGGCG
TTCGCGCTGGCGCTACAAGTCTCCCGGAAACGGTCGAGATTATCGCCTTC
GACAAGACCGAAGGTGTCTTCAACTATTACGAAGCTGGCCCCGACGCCAT
CGAGTTCTTTGGCAACTCACGCGATATGAAAAAAGGCTCGCAAGGCAACA
CACGCCGCTGCGCCGCCTGTCACACCGGCGGTGGACTCATTATGAAAGAG
CTCGATACTCCTTGGCTGCACTGGGAAGGTCACACCGACACT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93655:44..535-

>mRNA_M-pyrifera_M_contig93655.21632.1 ID=mRNA_M-pyrifera_M_contig93655.21632.1|Name=mRNA_M-pyrifera_M_contig93655.21632.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=984bp|location=Sequence derived from alignment at M-pyrifera_M_contig93655:44..535- (Macrocystis pyrifera P11B4 male)
CGACTTCACGATCCCGTCGCAAACCTGCTTTGGCACAACGACGAGAGCTG
CCCGAGCACATACCAAGACATCATGGCCAAGCTTCGCGAAGTCGATACCG
ATGGCTGTACCGGCGAGCGCGATGGCATCAAGACTCGCGTAGTAAGTGAG
ACCGCTCAACTCGCCGACGAAGCAACAAGCTACCGACTTGTGACATCACG
CCGCTGTAGTGACCGAGCGGAGCACGACATCCTCTTCTCGCTCTTTGGCG
TTCGCGCTGGCGCTACAAGTCTCCCGGAAACGGTCGAGATTATCGCCTTC
GACAAGACCGAAGGTGTCTTCAACTATTACGAAGCTGGCCCCGACGCCAT
CGAGTTCTTTGGCAACTCACGCGATATGAAAAAAGGCTCGCAAGGCAACA
CACGCCGCTGCGCCGCCTGTCACACCGGCGGTGGACTCATTATGAAAGAG
CTCGATACTCCTTGGCTGCACTGGGAAGGTCACACCGACACTCGACTTCA
CGATCCCGTCGCAAACCTGCTTTGGCACAACGACGAGAGCTGCCCGAGCA
CATACCAAGACATCATGGCCAAGCTTCGCGAAGTCGATACCGATGGCTGT
ACCGGCGAGCGCGATGGCATCAAGACTCGCGTAGTAAGTGAGACCGCTCA
ACTCGCCGACGAAGCAACAAGCTACCGACTTGTGACATCACGCCGCTGTA
GTGACCGAGCGGAGCACGACATCCTCTTCTCGCTCTTTGGCGTTCGCGCT
GGCGCTACAAGTCTCCCGGAAACGGTCGAGATTATCGCCTTCGACAAGAC
CGAAGGTGTCTTCAACTATTACGAAGCTGGCCCCGACGCCATCGAGTTCT
TTGGCAACTCACGCGATATGAAAAAAGGCTCGCAAGGCAACACACGCCGC
TGCGCCGCCTGTCACACCGGCGGTGGACTCATTATGAAAGAGCTCGATAC
TCCTTGGCTGCACTGGGAAGGTCACACCGACACT
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